Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.46938 * 2 1 4 4 C 1.50706 * 109.47325 * 119.99540 * 2 1 3 5 5 H 1.08002 * 119.99356 * 114.36872 * 4 2 1 6 6 C 1.37877 * 120.00116 * 294.37316 * 4 2 1 7 7 N 1.31510 * 119.99957 * 157.15012 * 6 4 2 8 8 Si 1.86799 * 120.00009 * 337.14725 * 6 4 2 9 9 H 1.48496 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47245 * 60.00265 * 8 6 4 11 11 H 1.48497 * 109.47243 * 300.00183 * 8 6 4 12 12 N 1.46494 * 109.47032 * 240.00273 * 2 1 3 13 13 C 1.46500 * 119.99749 * 299.99299 * 12 2 1 14 14 C 1.34780 * 120.00250 * 120.00233 * 12 2 1 15 15 O 1.21276 * 119.99651 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 12 2 17 17 H 1.09003 * 110.43866 * 298.90913 * 16 14 12 18 18 C 1.54889 * 110.48560 * 61.45155 * 16 14 12 19 19 C 1.54894 * 102.75185 * 156.62078 * 18 16 14 20 20 C 1.54270 * 104.19298 * 322.06064 * 19 18 16 21 21 C 1.53880 * 106.59881 * 23.60536 * 20 19 18 22 22 H 1.09001 * 110.02846 * 240.71703 * 21 20 19 23 23 N 1.46899 * 110.03046 * 119.28818 * 21 20 19 24 24 H 1.09004 * 109.47182 * 293.29554 * 1 2 3 25 25 H 1.09004 * 109.47399 * 53.28961 * 1 2 3 26 26 H 1.08993 * 109.47101 * 173.29276 * 1 2 3 27 27 H 0.97003 * 119.99465 * 354.91849 * 7 6 4 28 28 H 1.08997 * 109.47065 * 90.00843 * 13 12 2 29 29 H 1.09004 * 109.47338 * 210.00001 * 13 12 2 30 30 H 1.08994 * 109.47566 * 330.00517 * 13 12 2 31 31 H 1.09002 * 110.75649 * 274.93446 * 18 16 14 32 32 H 1.08995 * 110.75785 * 38.30395 * 18 16 14 33 33 H 1.09006 * 110.48411 * 80.73348 * 19 18 16 34 34 H 1.08993 * 110.49076 * 203.24811 * 19 18 16 35 35 H 1.08995 * 110.03573 * 142.89570 * 20 19 18 36 36 H 1.09004 * 110.02823 * 264.27743 * 20 19 18 37 37 H 1.00904 * 111.00009 * 62.83081 * 23 21 20 38 38 H 1.00894 * 110.99850 * 186.78904 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4795 7 7 1.8130 -0.9519 3.5408 8 14 1.4577 1.6521 2.6640 9 1 1.2401 1.9728 4.0975 10 1 0.2447 2.0110 1.8863 11 1 2.6188 2.4254 2.1550 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4279 14 6 2.7931 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3135 17 1 3.9202 -1.5949 -3.0344 18 6 2.1094 -1.2120 -4.1933 19 6 2.7524 -1.3355 -5.5970 20 6 3.7324 -0.1463 -5.6701 21 6 4.0779 0.2284 -4.2182 22 1 3.7715 1.2545 -4.0145 23 7 5.5213 0.0789 -3.9897 24 1 -0.3634 0.4064 0.9439 25 1 -0.3634 0.6143 -0.8239 26 1 -0.3633 -1.0206 -0.1200 27 1 1.9161 -1.9110 3.4385 28 1 0.7376 -2.1444 -1.9993 29 1 2.4629 -2.5818 -1.9863 30 1 1.5295 -2.5968 -0.4708 31 1 1.7330 -2.1773 -3.8546 32 1 1.3147 -0.4660 -4.1968 33 1 3.2903 -2.2792 -5.6885 34 1 1.9920 -1.2541 -6.3736 35 1 4.6357 -0.4391 -6.2052 36 1 3.2587 0.6976 -6.1717 37 1 6.0474 0.7104 -4.5750 38 1 5.7491 0.2135 -3.0161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082921814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = -70.849503 kcal Electronic energy + Delta-G solvation = -18273.508770 eV Core-core repulsion = 15535.215247 eV Total energy + Delta-G solvation = -2738.293523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.35069 -38.65470 -37.19134 -34.94999 -33.57737 -32.31647 -29.80990 -27.90516 -27.26361 -26.82225 -23.63728 -21.89203 -20.89452 -19.74826 -19.55964 -18.36217 -17.21853 -16.63766 -16.38082 -16.03591 -15.79874 -15.23424 -14.85449 -14.75773 -14.37384 -13.99606 -13.84029 -13.49391 -13.25335 -13.03637 -12.93743 -12.59629 -12.46690 -12.11351 -11.96743 -11.93001 -11.81180 -11.71970 -11.43479 -11.26105 -10.63118 -10.48913 -9.67094 -9.51876 -8.74520 -6.40192 1.39898 1.46871 1.66717 1.71232 2.27404 2.39988 2.94647 3.42174 3.56556 3.61467 3.92873 4.15589 4.34615 4.44701 4.49036 4.49590 4.53583 4.59813 4.68727 4.72071 4.76983 4.81545 4.93293 5.04519 5.10140 5.13892 5.19541 5.23118 5.36212 5.43495 5.69235 5.80509 6.01969 6.15690 6.49812 6.53909 6.71368 7.23933 7.37164 8.56196 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035773 B = 0.006845 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.516843 B = 4089.306530 C = 4338.704337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.234 3.766 3 H 0.027 0.973 4 C -0.614 4.614 5 H 0.034 0.966 6 C 0.000 4.000 7 N -0.922 5.922 8 Si 1.066 2.934 9 H -0.279 1.279 10 H -0.247 1.247 11 H -0.284 1.284 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.500 3.500 15 O -0.603 6.603 16 C -0.101 4.101 17 H 0.110 0.890 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.113 4.113 21 C 0.095 3.905 22 H 0.027 0.973 23 N -0.840 5.840 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.259 0.741 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.349 0.651 38 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 -1.733 -18.943 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.130 3.870 3 H 0.045 0.955 4 C -0.652 4.652 5 H 0.052 0.948 6 C -0.202 4.202 7 N -0.556 5.556 8 Si 0.889 3.111 9 H -0.204 1.204 10 H -0.171 1.171 11 H -0.211 1.211 12 N -0.323 5.323 13 C -0.060 4.060 14 C 0.290 3.710 15 O -0.486 6.486 16 C -0.123 4.123 17 H 0.128 0.872 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.017 4.017 22 H 0.045 0.955 23 N -0.369 5.369 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.162 0.838 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.351 -0.736 -17.966 17.984 hybrid contribution 0.580 -0.328 0.066 0.670 sum 0.230 -1.065 -17.900 17.933 Atomic orbital electron populations 1.22251 0.96471 1.01352 1.00355 1.18903 0.91959 0.93184 0.82929 0.95510 1.22249 1.40300 1.10018 0.92602 0.94814 1.26717 0.93022 1.08570 0.91878 1.70958 1.46186 1.05939 1.32539 0.83755 0.78576 0.72101 0.76695 1.20439 1.17101 1.21083 1.47977 1.49249 1.13163 1.21889 1.21907 1.01440 0.80650 1.01962 1.21328 0.77809 0.86685 0.85187 1.90579 1.60261 1.19558 1.78165 1.22199 0.99199 0.99149 0.91706 0.87241 1.22608 0.95163 1.02177 0.95051 1.22290 0.98199 0.98540 0.95694 1.22190 1.00409 0.98940 0.93580 1.21862 0.88128 0.96211 0.95467 0.95466 1.59027 1.05357 1.60911 1.11625 0.93016 0.93566 0.92216 0.93194 0.90564 0.89612 0.92560 0.88657 0.91992 0.90124 0.89527 0.89877 0.91295 0.83821 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.21 9.02 71.98 0.65 -5.57 16 2 C 0.23 11.44 2.23 44.25 0.10 11.54 16 3 H 0.03 1.46 5.48 -2.38 -0.01 1.45 16 4 C -0.61 -34.62 8.30 25.60 0.21 -34.41 16 5 H 0.03 2.05 7.38 -2.91 -0.02 2.03 16 6 C 0.00 -0.02 5.20 84.66 0.44 0.42 16 7 N -0.92 -56.53 13.70 21.45 0.29 -56.23 16 8 Si 1.07 51.88 26.44 68.60 1.81 53.69 16 9 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 10 H -0.25 -10.77 6.12 99.48 0.61 -10.16 16 11 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 12 N -0.59 -24.46 2.75 -826.81 -2.28 -26.74 16 13 C 0.08 2.63 7.73 127.77 0.99 3.62 16 14 C 0.50 20.05 7.07 87.66 0.62 20.67 16 15 O -0.60 -29.15 14.78 -3.02 -0.04 -29.19 16 16 C -0.10 -2.90 1.98 -10.47 -0.02 -2.92 16 17 H 0.11 3.07 7.40 -2.39 -0.02 3.05 16 18 C -0.11 -2.40 5.39 31.89 0.17 -2.23 16 19 C -0.11 -1.81 6.83 31.67 0.22 -1.60 16 20 C -0.11 -2.19 6.59 31.32 0.21 -1.99 16 21 C 0.10 2.56 3.39 45.64 0.15 2.71 16 22 H 0.03 0.91 6.90 -2.39 -0.02 0.89 16 23 N -0.84 -20.93 9.10 -165.67 -1.51 -22.43 16 24 H 0.05 2.28 5.44 -2.38 -0.01 2.27 16 25 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.06 2.35 7.45 -2.39 -0.02 2.33 16 27 H 0.26 15.89 8.73 -92.71 -0.81 15.08 16 28 H 0.08 1.96 7.59 -2.39 -0.02 1.94 16 29 H 0.09 2.22 5.92 -2.38 -0.01 2.21 16 30 H 0.06 2.06 6.92 -2.39 -0.02 2.05 16 31 H 0.09 1.71 6.15 -2.39 -0.01 1.69 16 32 H 0.06 1.46 8.05 -2.39 -0.02 1.44 16 33 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.46 7.92 -2.39 -0.02 1.44 16 36 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.35 7.15 9.07 -89.69 -0.81 6.33 16 38 H 0.34 9.51 9.01 -89.70 -0.81 8.70 16 Total: -1.00 -69.83 292.79 1.33 -68.50 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.69 Total: 22.13 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 3.74 Total: -9.74 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.49 Total: -105.40 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.04 Total: -29.19 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 1.81 Total: 53.69 kcal Total: -69.83 1.33 -68.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.345 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds