Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47089 * 2 1 4 4 N 1.46896 * 109.46977 * 119.99396 * 2 1 3 5 5 C 1.46901 * 111.00447 * 277.87067 * 4 2 1 6 6 C 1.53002 * 109.47507 * 185.28173 * 5 4 2 7 7 C 1.50695 * 115.54791 * 294.72907 * 6 5 4 8 8 H 1.07999 * 120.00429 * 92.31867 * 7 6 5 9 9 C 1.37881 * 119.99910 * 272.31055 * 7 6 5 10 10 N 1.31516 * 120.00018 * 183.28004 * 9 7 6 11 11 Si 1.86803 * 119.99806 * 3.28527 * 9 7 6 12 12 H 1.48499 * 109.46942 * 265.15815 * 11 9 7 13 13 H 1.48492 * 109.47128 * 25.16102 * 11 9 7 14 14 H 1.48501 * 109.47108 * 145.16401 * 11 9 7 15 15 C 1.52998 * 117.49690 * 80.39417 * 6 5 4 16 16 C 1.53001 * 117.49674 * 149.05534 * 6 5 4 17 17 C 1.50700 * 109.47364 * 239.99692 * 2 1 3 18 18 O 1.21284 * 119.99410 * 265.29035 * 17 2 1 19 19 N 1.34766 * 119.99886 * 85.29243 * 17 2 1 20 20 C 1.46506 * 119.99744 * 185.36095 * 19 17 2 21 21 C 1.46501 * 120.00343 * 5.35707 * 19 17 2 22 22 H 1.08999 * 109.47008 * 65.13568 * 1 2 3 23 23 H 1.09005 * 109.47141 * 185.13245 * 1 2 3 24 24 H 1.09003 * 109.47198 * 305.13805 * 1 2 3 25 25 H 1.00899 * 111.00267 * 41.82995 * 4 2 1 26 26 H 1.09000 * 109.46972 * 65.28024 * 5 4 2 27 27 H 1.09000 * 109.47006 * 305.28620 * 5 4 2 28 28 H 0.97002 * 119.99543 * 180.02562 * 10 9 7 29 29 H 1.08998 * 117.50005 * 214.99919 * 15 6 5 30 30 H 1.09003 * 117.49813 * 0.02773 * 15 6 5 31 31 H 1.08996 * 117.50202 * 359.97438 * 16 6 5 32 32 H 1.09007 * 117.49324 * 144.97494 * 16 6 5 33 33 H 1.08998 * 109.47314 * 359.97438 * 20 19 17 34 34 H 1.08998 * 109.47093 * 120.00027 * 20 19 17 35 35 H 1.09003 * 109.47090 * 239.99886 * 20 19 17 36 36 H 1.09003 * 109.46612 * 93.21178 * 21 19 17 37 37 H 1.09005 * 109.47107 * 213.20970 * 21 19 17 38 38 H 1.08995 * 109.46937 * 333.21364 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0181 0.2047 2.3628 6 6 2.6550 -0.5081 3.5575 7 6 1.9020 -1.7058 4.0766 8 1 2.1353 -2.6928 3.7054 9 6 0.9154 -1.5416 5.0256 10 7 0.3028 -2.5924 5.5259 11 14 0.4487 0.1734 5.6006 12 1 1.2033 0.5036 6.8362 13 1 0.7801 1.1583 4.5400 14 1 -1.0084 0.2214 5.8830 15 6 4.1830 -0.5521 3.6213 16 6 3.4024 0.3532 4.5775 17 6 2.0324 -0.7105 -1.2304 18 8 2.3158 -1.8885 -1.1771 19 7 2.1667 -0.0368 -2.3898 20 6 2.5419 -0.7510 -3.6128 21 6 1.9375 1.4097 -2.4274 22 1 -0.3633 0.4321 -0.9324 23 1 -0.3634 -1.0236 0.0919 24 1 -0.3634 0.5915 0.8404 25 1 1.4784 -1.5238 1.3833 26 1 0.9922 0.4795 2.6083 27 1 2.5889 1.1034 2.1293 28 1 -0.3915 -2.4767 6.1934 29 1 4.6437 -1.4474 4.0388 30 1 4.7345 -0.0729 2.8124 31 1 3.4408 1.4275 4.3973 32 1 3.3492 0.0536 5.6243 33 1 2.6691 -1.8104 -3.3903 34 1 1.7584 -0.6278 -4.3604 35 1 3.4780 -0.3460 -3.9974 36 1 2.8838 1.9313 -2.2838 37 1 1.5135 1.6854 -3.3931 38 1 1.2448 1.6885 -1.6335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = -0.462305 kcal Electronic energy + Delta-G solvation = -17869.274049 eV Core-core repulsion = 15134.032744 eV Total energy + Delta-G solvation = -2735.241305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.83567 -37.30957 -35.42279 -34.99886 -32.02790 -30.08589 -28.03850 -26.31116 -25.92568 -24.55295 -22.41198 -21.44071 -19.24774 -18.69944 -17.13007 -16.15151 -15.96640 -15.60905 -14.91886 -14.56363 -14.15869 -13.70158 -13.49023 -13.22226 -12.73214 -12.67807 -12.66096 -12.27926 -12.11661 -12.05712 -11.90705 -11.64006 -11.21155 -11.04621 -10.70361 -10.38515 -9.99698 -9.61907 -9.38550 -8.91535 -8.66725 -8.56067 -8.39890 -7.65327 -6.05960 -4.07935 2.84842 3.02558 3.29854 3.39109 3.43459 4.45248 4.52423 4.78391 4.95530 5.15013 5.19066 5.21145 5.24113 5.27922 5.33974 5.46740 5.51269 5.71358 5.76212 5.83862 5.89490 6.17932 6.19404 6.28015 6.39303 6.45479 6.53004 6.60553 6.87530 7.12966 7.26259 7.35105 7.74153 7.82601 8.12707 8.40060 8.59643 9.01196 9.57830 11.05923 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031849 B = 0.006373 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.933816 B = 4392.472139 C = 4483.035017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 H 0.092 0.908 4 N -0.659 5.659 5 C 0.100 3.900 6 C 0.007 3.993 7 C -0.483 4.483 8 H 0.079 0.921 9 C 0.075 3.925 10 N -0.899 5.899 11 Si 0.878 3.122 12 H -0.280 1.280 13 H -0.258 1.258 14 H -0.296 1.296 15 C -0.167 4.167 16 C -0.205 4.205 17 C 0.524 3.476 18 O -0.519 6.519 19 N -0.631 5.631 20 C 0.082 3.918 21 C 0.078 3.922 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.363 0.637 26 H 0.029 0.971 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 10.673 -14.910 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.048 4.048 3 H 0.110 0.890 4 N -0.292 5.292 5 C -0.029 4.029 6 C 0.005 3.995 7 C -0.521 4.521 8 H 0.097 0.903 9 C -0.127 4.127 10 N -0.537 5.537 11 Si 0.706 3.294 12 H -0.206 1.206 13 H -0.182 1.182 14 H -0.223 1.223 15 C -0.205 4.205 16 C -0.243 4.243 17 C 0.312 3.688 18 O -0.392 6.392 19 N -0.368 5.368 20 C -0.061 4.061 21 C -0.065 4.065 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.185 0.815 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.747 10.047 -14.883 18.041 hybrid contribution -1.265 1.141 0.568 1.796 sum 0.482 11.188 -14.315 18.175 Atomic orbital electron populations 1.22445 0.95287 1.03637 1.02303 1.21498 0.93925 0.98296 0.91041 0.89028 1.60152 1.58923 1.08730 1.01380 1.21706 0.98227 0.93273 0.89652 1.19297 0.90868 0.96526 0.92764 1.20341 1.17448 0.92288 1.22019 0.90269 1.25004 0.95683 0.96418 0.95565 1.69917 1.25398 1.29290 1.29050 0.86864 0.76767 0.86018 0.79714 1.20648 1.18202 1.22304 1.22684 0.96411 1.00717 1.00657 1.22987 1.08978 0.95363 0.96964 1.20850 0.76746 0.87374 0.83876 1.90677 1.48236 1.16261 1.84051 1.47754 1.71175 1.08654 1.09227 1.21599 0.99360 0.99315 0.85790 1.21803 1.01470 0.80308 1.02954 0.92366 0.91326 0.91177 0.81496 0.95312 0.93702 0.92728 0.89894 0.91004 0.91313 0.89658 0.89579 0.92706 0.92688 0.92660 0.91388 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 8.89 37.16 0.33 -2.12 16 2 C 0.07 1.04 2.13 -68.87 -0.15 0.89 16 3 H 0.09 1.24 6.22 -51.93 -0.32 0.91 16 4 N -0.66 -13.04 5.83 -107.95 -0.63 -13.67 16 5 C 0.10 2.05 4.94 -3.82 -0.02 2.03 16 6 C 0.01 0.16 1.00 -155.66 -0.16 0.00 16 7 C -0.48 -13.42 8.92 -34.44 -0.31 -13.73 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 11 Si 0.88 21.43 24.96 -169.99 -4.24 17.19 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.26 -5.86 5.63 56.52 0.32 -5.54 16 14 H -0.30 -7.28 7.11 56.52 0.40 -6.87 16 15 C -0.17 -3.60 9.96 -26.69 -0.27 -3.87 16 16 C -0.21 -4.44 7.58 -26.69 -0.20 -4.64 16 17 C 0.52 8.53 6.87 -10.99 -0.08 8.45 16 18 O -0.52 -10.63 15.96 5.55 0.09 -10.54 16 19 N -0.63 -7.74 3.27 -189.51 -0.62 -8.36 16 20 C 0.08 0.85 10.70 59.85 0.64 1.49 16 21 C 0.08 0.65 10.11 59.85 0.60 1.26 16 22 H 0.06 0.64 7.49 -51.93 -0.39 0.25 16 23 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 24 H 0.07 0.97 7.54 -51.93 -0.39 0.58 16 25 H 0.36 8.00 8.04 -39.29 -0.32 7.69 16 26 H 0.03 0.61 6.02 -51.93 -0.31 0.29 16 27 H 0.04 0.83 7.88 -51.93 -0.41 0.42 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 30 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.94 7.30 -51.93 -0.38 1.56 16 33 H 0.09 1.08 6.91 -51.93 -0.36 0.72 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 38 H 0.08 0.60 5.35 -51.93 -0.28 0.32 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -32.46 304.52 -5.91 -38.36 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.17 Total: 7.14 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 0.31 Total: -8.19 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.48 Total: -48.54 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.24 Total: 17.19 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.46 -5.91 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.901 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds