Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47089 * 2 1 4 4 N 1.46896 * 109.46977 * 119.99396 * 2 1 3 5 5 C 1.46901 * 111.00447 * 277.87067 * 4 2 1 6 6 C 1.53002 * 109.47507 * 185.28173 * 5 4 2 7 7 C 1.50695 * 115.54791 * 294.72907 * 6 5 4 8 8 H 1.07999 * 120.00429 * 92.31867 * 7 6 5 9 9 C 1.37881 * 119.99910 * 272.31055 * 7 6 5 10 10 N 1.31516 * 120.00018 * 183.28004 * 9 7 6 11 11 Si 1.86803 * 119.99806 * 3.28527 * 9 7 6 12 12 H 1.48499 * 109.46942 * 265.15815 * 11 9 7 13 13 H 1.48492 * 109.47128 * 25.16102 * 11 9 7 14 14 H 1.48501 * 109.47108 * 145.16401 * 11 9 7 15 15 C 1.52998 * 117.49690 * 80.39417 * 6 5 4 16 16 C 1.53001 * 117.49674 * 149.05534 * 6 5 4 17 17 C 1.50700 * 109.47364 * 239.99692 * 2 1 3 18 18 O 1.21284 * 119.99410 * 265.29035 * 17 2 1 19 19 N 1.34766 * 119.99886 * 85.29243 * 17 2 1 20 20 C 1.46506 * 119.99744 * 185.36095 * 19 17 2 21 21 C 1.46501 * 120.00343 * 5.35707 * 19 17 2 22 22 H 1.08999 * 109.47008 * 65.13568 * 1 2 3 23 23 H 1.09005 * 109.47141 * 185.13245 * 1 2 3 24 24 H 1.09003 * 109.47198 * 305.13805 * 1 2 3 25 25 H 1.00899 * 111.00267 * 41.82995 * 4 2 1 26 26 H 1.09000 * 109.46972 * 65.28024 * 5 4 2 27 27 H 1.09000 * 109.47006 * 305.28620 * 5 4 2 28 28 H 0.97002 * 119.99543 * 180.02562 * 10 9 7 29 29 H 1.08998 * 117.50005 * 214.99919 * 15 6 5 30 30 H 1.09003 * 117.49813 * 0.02773 * 15 6 5 31 31 H 1.08996 * 117.50202 * 359.97438 * 16 6 5 32 32 H 1.09007 * 117.49324 * 144.97494 * 16 6 5 33 33 H 1.08998 * 109.47314 * 359.97438 * 20 19 17 34 34 H 1.08998 * 109.47093 * 120.00027 * 20 19 17 35 35 H 1.09003 * 109.47090 * 239.99886 * 20 19 17 36 36 H 1.09003 * 109.46612 * 93.21178 * 21 19 17 37 37 H 1.09005 * 109.47107 * 213.20970 * 21 19 17 38 38 H 1.08995 * 109.46937 * 333.21364 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0181 0.2047 2.3628 6 6 2.6550 -0.5081 3.5575 7 6 1.9020 -1.7058 4.0766 8 1 2.1353 -2.6928 3.7054 9 6 0.9154 -1.5416 5.0256 10 7 0.3028 -2.5924 5.5259 11 14 0.4487 0.1734 5.6006 12 1 1.2033 0.5036 6.8362 13 1 0.7801 1.1583 4.5400 14 1 -1.0084 0.2214 5.8830 15 6 4.1830 -0.5521 3.6213 16 6 3.4024 0.3532 4.5775 17 6 2.0324 -0.7105 -1.2304 18 8 2.3158 -1.8885 -1.1771 19 7 2.1667 -0.0368 -2.3898 20 6 2.5419 -0.7510 -3.6128 21 6 1.9375 1.4097 -2.4274 22 1 -0.3633 0.4321 -0.9324 23 1 -0.3634 -1.0236 0.0919 24 1 -0.3634 0.5915 0.8404 25 1 1.4784 -1.5238 1.3833 26 1 0.9922 0.4795 2.6083 27 1 2.5889 1.1034 2.1293 28 1 -0.3915 -2.4767 6.1934 29 1 4.6437 -1.4474 4.0388 30 1 4.7345 -0.0729 2.8124 31 1 3.4408 1.4275 4.3973 32 1 3.3492 0.0536 5.6243 33 1 2.6691 -1.8104 -3.3903 34 1 1.7584 -0.6278 -4.3604 35 1 3.4780 -0.3460 -3.9974 36 1 2.8838 1.9313 -2.2838 37 1 1.5135 1.6854 -3.3931 38 1 1.2448 1.6885 -1.6335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = -25.009063 kcal Electronic energy + Delta-G solvation = -17870.338476 eV Core-core repulsion = 15134.032744 eV Total energy + Delta-G solvation = -2736.305732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01841 -38.98613 -36.51857 -36.41786 -34.19143 -31.39349 -28.85397 -27.92533 -27.25420 -26.12479 -23.64605 -23.13671 -20.96038 -19.97618 -18.53265 -17.81302 -17.24727 -16.82302 -16.56730 -15.93554 -15.51026 -15.34091 -14.74293 -14.65638 -14.42337 -13.95064 -13.56235 -13.40010 -13.28378 -13.20887 -13.09318 -12.95269 -12.90650 -12.59509 -12.35939 -12.10054 -11.81150 -11.45784 -10.84253 -10.79529 -10.55652 -10.23069 -9.62075 -9.14053 -8.24755 -6.31761 1.38694 1.39938 1.54118 1.64489 2.05442 2.41005 3.09020 3.11967 3.58934 3.68239 4.00621 4.09938 4.21372 4.33425 4.44673 4.46235 4.53382 4.55673 4.62753 4.69437 4.77006 4.81739 4.87203 4.91835 4.93912 4.96733 5.14141 5.17185 5.42076 5.54248 5.58031 5.77772 6.18522 6.36090 6.43049 6.49063 6.78857 7.25281 7.37537 8.91364 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031849 B = 0.006373 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.933816 B = 4392.472139 C = 4483.035017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.067 3.933 3 H 0.123 0.877 4 N -0.676 5.676 5 C 0.110 3.890 6 C -0.020 4.020 7 C -0.482 4.482 8 H 0.022 0.978 9 C 0.016 3.984 10 N -0.954 5.954 11 Si 0.943 3.057 12 H -0.275 1.275 13 H -0.222 1.222 14 H -0.299 1.299 15 C -0.162 4.162 16 C -0.190 4.190 17 C 0.516 3.484 18 O -0.578 6.578 19 N -0.625 5.625 20 C 0.078 3.922 21 C 0.068 3.932 22 H 0.090 0.910 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.342 0.658 26 H 0.024 0.976 27 H 0.078 0.922 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 15.060 -16.487 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.046 4.046 3 H 0.141 0.859 4 N -0.307 5.307 5 C -0.019 4.019 6 C -0.021 4.021 7 C -0.520 4.520 8 H 0.040 0.960 9 C -0.180 4.180 10 N -0.594 5.594 11 Si 0.768 3.232 12 H -0.201 1.201 13 H -0.144 1.144 14 H -0.227 1.227 15 C -0.199 4.199 16 C -0.228 4.228 17 C 0.304 3.696 18 O -0.457 6.457 19 N -0.359 5.359 20 C -0.065 4.065 21 C -0.073 4.073 22 H 0.109 0.891 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.161 0.839 26 H 0.042 0.958 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.007 14.503 -16.521 22.075 hybrid contribution -1.269 -0.316 0.941 1.612 sum 0.737 14.187 -15.580 21.084 Atomic orbital electron populations 1.22368 0.94019 1.02408 1.04178 1.21626 0.94964 0.99039 0.88995 0.85909 1.60108 1.59456 1.08468 1.02696 1.21572 0.98036 0.93754 0.88547 1.19303 0.91641 0.96152 0.95020 1.20433 1.17893 0.91997 1.21640 0.95973 1.25906 0.95545 1.00912 0.95683 1.70089 1.26661 1.32219 1.30422 0.85823 0.76086 0.81222 0.80112 1.20112 1.14385 1.22665 1.22680 0.95342 1.00477 1.01440 1.23031 1.06970 0.97150 0.95643 1.21058 0.76490 0.86798 0.85211 1.90658 1.51172 1.18713 1.85116 1.47876 1.69291 1.10367 1.08390 1.21748 1.01469 0.97657 0.85581 1.22128 1.02652 0.77486 1.05043 0.89103 0.93907 0.90814 0.83916 0.95795 0.90407 0.92772 0.91768 0.88387 0.87481 0.91199 0.92547 0.89918 0.90613 0.91397 0.88482 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.38 8.89 71.98 0.64 -3.74 16 2 C 0.07 1.95 2.13 44.17 0.09 2.04 16 3 H 0.12 2.77 6.22 -2.39 -0.01 2.75 16 4 N -0.68 -26.41 5.83 -495.45 -2.89 -29.30 16 5 C 0.11 4.20 4.94 86.30 0.43 4.63 16 6 C -0.02 -0.91 1.00 -52.93 -0.05 -0.97 16 7 C -0.48 -27.76 8.92 25.60 0.23 -27.53 16 8 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 9 C 0.02 0.94 5.47 84.66 0.46 1.40 16 10 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 11 Si 0.94 43.63 24.96 68.60 1.71 45.34 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.22 -8.89 5.63 99.48 0.56 -8.33 16 14 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 15 C -0.16 -6.73 9.96 30.62 0.30 -6.42 16 16 C -0.19 -7.64 7.58 30.62 0.23 -7.41 16 17 C 0.52 16.30 6.87 87.66 0.60 16.90 16 18 O -0.58 -24.46 15.96 -3.04 -0.05 -24.51 16 19 N -0.62 -13.66 3.27 -871.88 -2.85 -16.51 16 20 C 0.08 1.45 10.70 127.77 1.37 2.82 16 21 C 0.07 0.83 10.11 127.77 1.29 2.12 16 22 H 0.09 1.70 7.49 -2.39 -0.02 1.68 16 23 H 0.04 1.31 8.05 -2.38 -0.02 1.29 16 24 H 0.07 1.84 7.54 -2.39 -0.02 1.83 16 25 H 0.34 15.74 8.04 -89.69 -0.72 15.01 16 26 H 0.02 0.93 6.02 -2.39 -0.01 0.92 16 27 H 0.08 2.48 7.88 -2.39 -0.02 2.46 16 28 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 31 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.07 3.03 7.30 -2.38 -0.02 3.01 16 33 H 0.06 1.42 6.91 -2.39 -0.02 1.40 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 0.66 8.10 -2.38 -0.02 0.64 16 38 H 0.08 0.90 5.35 -2.39 -0.01 0.89 16 Total: -1.00 -75.68 304.52 1.99 -73.68 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.17 Total: 27.65 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 5.60 Total: -16.16 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -5.44 Total: -106.00 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.51 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.71 Total: 45.34 kcal Total: -75.68 1.99 -73.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.675 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds