Wall clock time and date at job start Mon Mar 30 2020 04:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47437 * 2 1 4 4 C 1.34773 * 120.00386 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99792 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00264 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47479 * 300.00761 * 6 4 3 8 8 C 1.53007 * 109.46922 * 60.00321 * 6 4 3 9 9 N 1.46904 * 109.47349 * 179.97438 * 6 4 3 10 10 C 1.46904 * 110.99787 * 155.00241 * 9 6 4 11 11 C 1.52999 * 109.46646 * 185.19547 * 10 9 6 12 12 C 1.50699 * 115.55445 * 297.13794 * 11 10 9 13 13 H 1.08000 * 119.99679 * 95.21041 * 12 11 10 14 14 C 1.37883 * 120.00138 * 275.22254 * 12 11 10 15 15 N 1.31514 * 119.99876 * 7.09318 * 14 12 11 16 16 Si 1.86794 * 120.00059 * 187.09580 * 14 12 11 17 17 H 1.48496 * 109.47468 * 179.97438 * 16 14 12 18 18 H 1.48507 * 109.47052 * 299.99863 * 16 14 12 19 19 H 1.48507 * 109.47223 * 59.99305 * 16 14 12 20 20 C 1.53003 * 117.49863 * 82.81338 * 11 10 9 21 21 C 1.53001 * 117.49730 * 151.47248 * 11 10 9 22 22 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46669 * 300.00147 * 1 2 3 24 24 H 1.09000 * 109.47031 * 60.00042 * 1 2 3 25 25 H 1.09006 * 109.47073 * 240.00206 * 2 1 3 26 26 H 1.09000 * 109.47031 * 119.99958 * 2 1 3 27 27 H 0.97004 * 119.99708 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47270 * 179.97438 * 8 6 4 29 29 H 1.08995 * 109.47341 * 299.99876 * 8 6 4 30 30 H 1.09000 * 109.47203 * 59.99873 * 8 6 4 31 31 H 1.00891 * 111.00013 * 278.96021 * 9 6 4 32 32 H 1.09000 * 109.47248 * 65.19800 * 10 9 6 33 33 H 1.09000 * 109.47262 * 305.19227 * 10 9 6 34 34 H 0.97006 * 119.99734 * 355.40076 * 15 14 12 35 35 H 1.09006 * 117.49442 * 214.99775 * 20 11 10 36 36 H 1.08996 * 117.49999 * 0.02562 * 20 11 10 37 37 H 1.09005 * 117.50024 * 359.97296 * 21 11 10 38 38 H 1.09000 * 117.50409 * 144.97210 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8458 3.0482 -0.0001 7 1 3.4829 3.5616 -0.8904 8 6 3.3352 3.7702 1.2486 9 7 5.3148 3.0482 0.0013 10 6 5.8418 4.2908 -0.5787 11 6 7.3658 4.2004 -0.6792 12 6 8.0970 4.0671 0.6317 13 1 8.3740 3.0898 0.9985 14 6 8.4121 5.1928 1.3630 15 7 7.9553 6.3683 0.9900 16 14 9.4878 5.0481 2.8832 17 1 9.6774 6.3923 3.4852 18 1 8.8331 4.1514 3.8694 19 1 10.8087 4.4856 2.5033 20 6 7.9520 3.4748 -1.8920 21 6 8.0490 4.9992 -1.7910 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.3880 2.1185 0.0004 28 1 3.6989 4.7977 1.2485 29 1 2.2453 3.7702 1.2481 30 1 3.6981 3.2568 2.1390 31 1 5.6755 2.9022 0.9321 32 1 5.5689 5.1329 0.0573 33 1 5.4200 4.4350 -1.5734 34 1 7.4529 6.4538 0.1647 35 1 8.8665 2.9010 -1.7416 36 1 7.2519 3.0623 -2.6185 37 1 7.4127 5.5887 -2.4512 38 1 9.0271 5.4285 -1.5742 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:48 Heat of formation + Delta-G solvation = -24.640772 kcal Electronic energy + Delta-G solvation = -17549.406036 eV Core-core repulsion = 14813.116274 eV Total energy + Delta-G solvation = -2736.289762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.57644 -37.21583 -35.31677 -34.79667 -31.80778 -30.96900 -29.19764 -25.37670 -24.66873 -23.74739 -22.12916 -21.08630 -20.02268 -19.34587 -17.03634 -16.16617 -16.07394 -15.50888 -14.74927 -14.23347 -14.05530 -13.69802 -13.66166 -13.42453 -12.70319 -12.54667 -12.32437 -12.12294 -12.00707 -11.87370 -11.63152 -11.42950 -11.14716 -10.80755 -10.63805 -10.29386 -10.08503 -9.59153 -9.30039 -8.97676 -8.45051 -8.31402 -8.23747 -7.57258 -6.30044 -4.02593 2.96781 3.25025 3.45717 3.48043 3.66008 4.54289 4.71337 4.83195 4.90815 5.03337 5.15340 5.26983 5.30615 5.38977 5.41301 5.62562 5.74037 5.77381 5.84117 5.92373 6.02133 6.22829 6.32764 6.40775 6.52002 6.59434 6.68791 6.77314 7.00184 7.31002 7.39307 7.58281 7.88010 8.18023 8.37761 8.51285 8.53711 8.94932 9.71802 11.08885 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030222 B = 0.005625 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.254802 B = 4976.186298 C = 5319.323007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.742 5.742 4 C 0.516 3.484 5 O -0.514 6.514 6 C 0.067 3.933 7 H 0.094 0.906 8 C -0.177 4.177 9 N -0.654 5.654 10 C 0.103 3.897 11 C 0.028 3.972 12 C -0.567 4.567 13 H 0.053 0.947 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 1.065 2.935 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.288 1.288 20 C -0.183 4.183 21 C -0.185 4.185 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.396 0.604 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.357 0.643 32 H 0.029 0.971 33 H 0.040 0.960 34 H 0.274 0.726 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.666 -6.011 -1.364 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.397 5.397 4 C 0.301 3.699 5 O -0.387 6.387 6 C -0.047 4.047 7 H 0.112 0.888 8 C -0.236 4.236 9 N -0.286 5.286 10 C -0.026 4.026 11 C 0.027 3.973 12 C -0.605 4.605 13 H 0.072 0.928 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.893 3.107 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.220 4.220 21 C -0.223 4.223 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.230 0.770 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.178 0.822 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.350 -6.184 -0.686 14.729 hybrid contribution -1.203 0.117 -0.669 1.381 sum -14.553 -6.068 -1.355 15.825 Atomic orbital electron populations 1.21997 0.94789 1.02953 1.02364 1.21215 0.93806 0.83663 1.02203 1.46127 1.07438 1.08316 1.77839 1.20894 0.81498 0.91986 0.75488 1.90692 1.55100 1.46074 1.46862 1.21453 0.92476 0.91737 0.99049 0.88784 1.22466 1.00826 1.02016 0.98335 1.60075 1.01524 1.37287 1.29699 1.21575 0.96076 0.88878 0.96048 1.18999 0.89704 0.98507 0.90068 1.21309 1.39500 0.94990 1.04701 0.92850 1.25743 0.96991 0.92626 1.02611 1.70745 1.34456 1.25213 1.23992 0.83603 0.76125 0.75619 0.75314 1.20995 1.21512 1.21492 1.22746 1.02246 0.93804 1.03237 1.22789 1.02205 0.93058 1.04283 0.91035 0.92078 0.92098 0.91800 0.91802 0.77003 0.91105 0.92482 0.91867 0.82187 0.95248 0.94202 0.91511 0.90549 0.91478 0.91871 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.03 37.16 0.37 -0.73 16 2 C 0.11 1.20 6.39 -4.04 -0.03 1.17 16 3 N -0.74 -8.63 5.45 -60.30 -0.33 -8.96 16 4 C 0.52 8.40 7.22 -10.99 -0.08 8.32 16 5 O -0.51 -10.78 16.43 5.56 0.09 -10.68 16 6 C 0.07 1.08 3.00 -68.86 -0.21 0.87 16 7 H 0.09 1.37 7.72 -51.93 -0.40 0.97 16 8 C -0.18 -2.44 9.06 37.16 0.34 -2.10 16 9 N -0.65 -13.54 5.70 -107.95 -0.62 -14.16 16 10 C 0.10 2.28 5.29 -3.82 -0.02 2.26 16 11 C 0.03 0.70 1.14 -155.66 -0.18 0.52 16 12 C -0.57 -15.64 8.24 -34.44 -0.28 -15.93 16 13 H 0.05 1.52 7.82 -52.49 -0.41 1.11 16 14 C 0.03 0.71 5.39 -17.82 -0.10 0.61 16 15 N -0.91 -26.37 13.57 55.43 0.75 -25.62 16 16 Si 1.06 24.98 29.91 -169.99 -5.08 19.90 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.18 -4.26 9.96 -26.69 -0.27 -4.53 16 21 C -0.19 -4.38 8.73 -26.69 -0.23 -4.62 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.40 3.43 7.89 -40.82 -0.32 3.10 16 28 H 0.07 1.06 7.55 -51.93 -0.39 0.67 16 29 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 30 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 31 H 0.36 8.02 7.96 -39.30 -0.31 7.71 16 32 H 0.03 0.68 7.26 -51.93 -0.38 0.31 16 33 H 0.04 0.82 7.89 -51.93 -0.41 0.41 16 34 H 0.27 7.87 6.20 -40.82 -0.25 7.62 16 35 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -32.02 316.08 -7.39 -39.42 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.29 Total: 9.50 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.68 Total: -14.16 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.19 Total: -48.73 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.02 -7.39 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.776 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds