Wall clock time and date at job start Mon Mar 30 2020 04:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47437 * 2 1 4 4 C 1.34773 * 120.00386 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99792 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00264 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47479 * 300.00761 * 6 4 3 8 8 C 1.53007 * 109.46922 * 60.00321 * 6 4 3 9 9 N 1.46904 * 109.47349 * 179.97438 * 6 4 3 10 10 C 1.46904 * 110.99787 * 155.00241 * 9 6 4 11 11 C 1.52999 * 109.46646 * 185.19547 * 10 9 6 12 12 C 1.50699 * 115.55445 * 297.13794 * 11 10 9 13 13 H 1.08000 * 119.99679 * 95.21041 * 12 11 10 14 14 C 1.37883 * 120.00138 * 275.22254 * 12 11 10 15 15 N 1.31514 * 119.99876 * 7.09318 * 14 12 11 16 16 Si 1.86794 * 120.00059 * 187.09580 * 14 12 11 17 17 H 1.48496 * 109.47468 * 179.97438 * 16 14 12 18 18 H 1.48507 * 109.47052 * 299.99863 * 16 14 12 19 19 H 1.48507 * 109.47223 * 59.99305 * 16 14 12 20 20 C 1.53003 * 117.49863 * 82.81338 * 11 10 9 21 21 C 1.53001 * 117.49730 * 151.47248 * 11 10 9 22 22 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46669 * 300.00147 * 1 2 3 24 24 H 1.09000 * 109.47031 * 60.00042 * 1 2 3 25 25 H 1.09006 * 109.47073 * 240.00206 * 2 1 3 26 26 H 1.09000 * 109.47031 * 119.99958 * 2 1 3 27 27 H 0.97004 * 119.99708 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47270 * 179.97438 * 8 6 4 29 29 H 1.08995 * 109.47341 * 299.99876 * 8 6 4 30 30 H 1.09000 * 109.47203 * 59.99873 * 8 6 4 31 31 H 1.00891 * 111.00013 * 278.96021 * 9 6 4 32 32 H 1.09000 * 109.47248 * 65.19800 * 10 9 6 33 33 H 1.09000 * 109.47262 * 305.19227 * 10 9 6 34 34 H 0.97006 * 119.99734 * 355.40076 * 15 14 12 35 35 H 1.09006 * 117.49442 * 214.99775 * 20 11 10 36 36 H 1.08996 * 117.49999 * 0.02562 * 20 11 10 37 37 H 1.09005 * 117.50024 * 359.97296 * 21 11 10 38 38 H 1.09000 * 117.50409 * 144.97210 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8458 3.0482 -0.0001 7 1 3.4829 3.5616 -0.8904 8 6 3.3352 3.7702 1.2486 9 7 5.3148 3.0482 0.0013 10 6 5.8418 4.2908 -0.5787 11 6 7.3658 4.2004 -0.6792 12 6 8.0970 4.0671 0.6317 13 1 8.3740 3.0898 0.9985 14 6 8.4121 5.1928 1.3630 15 7 7.9553 6.3683 0.9900 16 14 9.4878 5.0481 2.8832 17 1 9.6774 6.3923 3.4852 18 1 8.8331 4.1514 3.8694 19 1 10.8087 4.4856 2.5033 20 6 7.9520 3.4748 -1.8920 21 6 8.0490 4.9992 -1.7910 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.3880 2.1185 0.0004 28 1 3.6989 4.7977 1.2485 29 1 2.2453 3.7702 1.2481 30 1 3.6981 3.2568 2.1390 31 1 5.6755 2.9022 0.9321 32 1 5.5689 5.1329 0.0573 33 1 5.4200 4.4350 -1.5734 34 1 7.4529 6.4538 0.1647 35 1 8.8665 2.9010 -1.7416 36 1 7.2519 3.0623 -2.6185 37 1 7.4127 5.5887 -2.4512 38 1 9.0271 5.4285 -1.5742 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:48 Heat of formation + Delta-G solvation = -47.491954 kcal Electronic energy + Delta-G solvation = -17550.396938 eV Core-core repulsion = 14813.116274 eV Total energy + Delta-G solvation = -2737.280664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85791 -39.01791 -36.59884 -36.13551 -33.91363 -32.09007 -30.36913 -27.18916 -26.40952 -24.97436 -23.20423 -22.94102 -21.47150 -21.08002 -18.68076 -17.83985 -17.22578 -16.60990 -16.06058 -15.91120 -15.61856 -15.56842 -14.92169 -14.69429 -14.37861 -14.14760 -13.54627 -13.39151 -13.26023 -13.10353 -12.70602 -12.66297 -12.52824 -12.46304 -12.30128 -12.18618 -11.94617 -11.40789 -10.75749 -10.44229 -10.36833 -10.19610 -10.05661 -9.17503 -8.49418 -6.22051 1.55226 1.61249 1.69633 1.80922 2.16024 2.59093 3.15897 3.26990 3.61029 3.81865 4.02392 4.09271 4.17165 4.20750 4.24484 4.44262 4.52039 4.53212 4.61530 4.70615 4.81155 4.88223 4.88588 4.96039 5.06818 5.09183 5.14579 5.26848 5.45812 5.49657 5.52360 6.18989 6.24558 6.31358 6.44760 6.67228 6.79611 7.35477 7.57290 8.90446 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030222 B = 0.005625 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.254802 B = 4976.186298 C = 5319.323007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 N -0.719 5.719 4 C 0.516 3.484 5 O -0.570 6.570 6 C 0.066 3.934 7 H 0.115 0.885 8 C -0.167 4.167 9 N -0.668 5.668 10 C 0.119 3.881 11 C 0.001 3.999 12 C -0.576 4.576 13 H 0.034 0.966 14 C -0.014 4.014 15 N -0.929 5.929 16 Si 1.105 2.895 17 H -0.284 1.284 18 H -0.276 1.276 19 H -0.280 1.280 20 C -0.173 4.173 21 C -0.179 4.179 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.415 0.585 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.342 0.658 32 H 0.012 0.988 33 H 0.057 0.943 34 H 0.266 0.734 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.721 -6.081 -1.475 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.374 5.374 4 C 0.302 3.698 5 O -0.448 6.448 6 C -0.048 4.048 7 H 0.132 0.868 8 C -0.226 4.226 9 N -0.299 5.299 10 C -0.010 4.010 11 C 0.000 4.000 12 C -0.614 4.614 13 H 0.052 0.948 14 C -0.215 4.215 15 N -0.565 5.565 16 Si 0.929 3.071 17 H -0.209 1.209 18 H -0.201 1.201 19 H -0.206 1.206 20 C -0.210 4.210 21 C -0.217 4.217 22 H 0.103 0.897 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.252 0.748 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.161 0.839 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.479 -6.248 -0.819 16.712 hybrid contribution -0.624 0.079 -0.679 0.925 sum -16.102 -6.168 -1.497 17.308 Atomic orbital electron populations 1.21941 0.91406 1.04215 1.03420 1.21362 0.96457 0.82455 1.01072 1.45962 1.06145 1.09777 1.75559 1.20922 0.82586 0.91318 0.74953 1.90674 1.56813 1.47392 1.49894 1.21578 0.89839 0.92362 1.01040 0.86771 1.22360 1.03383 1.00456 0.96446 1.60013 1.04651 1.36493 1.28742 1.21316 0.94188 0.88900 0.96621 1.19193 0.91426 0.99922 0.89477 1.21471 1.39706 0.94112 1.06089 0.94795 1.26868 0.97499 0.92213 1.04897 1.70841 1.35672 1.25799 1.24196 0.83056 0.75222 0.75799 0.72990 1.20946 1.20115 1.20555 1.22722 1.02031 0.93503 1.02728 1.22711 1.01366 0.93464 1.04161 0.89745 0.90978 0.90994 0.93030 0.93031 0.74835 0.92369 0.88293 0.93138 0.83901 0.96982 0.92441 0.92306 0.91438 0.89639 0.89642 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.03 71.98 0.72 -0.85 16 2 C 0.11 2.10 6.39 86.38 0.55 2.66 16 3 N -0.72 -15.11 5.45 -463.07 -2.52 -17.63 16 4 C 0.52 16.25 7.22 87.66 0.63 16.88 16 5 O -0.57 -24.08 16.43 -3.03 -0.05 -24.13 16 6 C 0.07 2.01 3.00 44.17 0.13 2.14 16 7 H 0.11 3.04 7.72 -2.39 -0.02 3.02 16 8 C -0.17 -4.32 9.06 71.98 0.65 -3.67 16 9 N -0.67 -27.65 5.70 -495.43 -2.82 -30.48 16 10 C 0.12 5.20 5.29 86.30 0.46 5.66 16 11 C 0.00 0.03 1.14 -52.93 -0.06 -0.03 16 12 C -0.58 -32.29 8.24 25.60 0.21 -32.08 16 13 H 0.03 1.99 7.82 -2.91 -0.02 1.96 16 14 C -0.01 -0.81 5.39 84.66 0.46 -0.35 16 15 N -0.93 -54.29 13.57 21.45 0.29 -53.99 16 16 Si 1.11 50.57 29.91 68.60 2.05 52.62 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 C -0.17 -7.95 9.96 30.62 0.30 -7.65 16 21 C -0.18 -8.41 8.73 30.62 0.27 -8.14 16 22 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 24 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.41 5.66 7.89 -92.71 -0.73 4.93 16 28 H 0.06 1.67 7.55 -2.39 -0.02 1.65 16 29 H 0.10 1.69 7.56 -2.39 -0.02 1.67 16 30 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 31 H 0.34 15.73 7.96 -89.70 -0.71 15.01 16 32 H 0.01 0.56 7.26 -2.39 -0.02 0.55 16 33 H 0.06 2.28 7.89 -2.39 -0.02 2.26 16 34 H 0.27 15.49 6.20 -92.70 -0.57 14.92 16 35 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16 36 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 37 H 0.09 3.59 8.14 -2.38 -0.02 3.57 16 38 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -70.28 316.08 1.07 -69.21 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.21 Total: 29.83 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 4.33 Total: -25.43 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -5.06 Total: -102.10 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.05 Total: 52.62 kcal Total: -70.28 1.07 -69.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.718 kcal (2) G-P(sol) polarization free energy of solvation -70.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds