Wall clock time and date at job start Mon Mar 30 2020 04:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46873 * 2 1 4 4 C 1.34777 * 120.00042 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99864 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00053 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47189 * 35.61515 * 6 4 3 8 8 C 1.53000 * 109.47451 * 275.61156 * 6 4 3 9 9 N 1.46906 * 109.47132 * 155.61185 * 6 4 3 10 10 C 1.46895 * 111.00072 * 205.77134 * 9 6 4 11 11 C 1.53002 * 109.47316 * 174.30959 * 10 9 6 12 12 C 1.50700 * 115.55793 * 39.69948 * 11 10 9 13 13 H 1.08001 * 119.99758 * 268.77530 * 12 11 10 14 14 C 1.37876 * 120.00111 * 88.77444 * 12 11 10 15 15 N 1.31517 * 119.99957 * 183.07180 * 14 12 11 16 16 Si 1.86802 * 119.99929 * 3.07322 * 14 12 11 17 17 H 1.48499 * 109.46998 * 88.74233 * 16 14 12 18 18 H 1.48499 * 109.47158 * 208.74327 * 16 14 12 19 19 H 1.48497 * 109.46766 * 328.74450 * 16 14 12 20 20 C 1.53000 * 117.50280 * 185.38999 * 11 10 9 21 21 C 1.52994 * 60.03171 * 107.47894 * 20 11 10 22 22 H 1.08995 * 109.47223 * 59.99944 * 1 2 3 23 23 H 1.08998 * 109.46886 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47197 * 299.99339 * 1 2 3 25 25 H 1.09000 * 109.47197 * 240.00660 * 2 1 3 26 26 H 1.08995 * 109.47223 * 120.00056 * 2 1 3 27 27 H 0.96998 * 120.00139 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.47095 * 64.12105 * 8 6 4 29 29 H 1.09004 * 109.47014 * 184.12076 * 8 6 4 30 30 H 1.08996 * 109.47091 * 304.11812 * 8 6 4 31 31 H 1.00896 * 110.99737 * 81.81740 * 9 6 4 32 32 H 1.09005 * 109.47207 * 54.31437 * 10 9 6 33 33 H 1.08994 * 109.47367 * 294.31461 * 10 9 6 34 34 H 0.97003 * 119.99518 * 179.97438 * 15 14 12 35 35 H 1.09005 * 117.49561 * 214.98229 * 20 11 10 36 36 H 1.08993 * 117.49550 * 359.97208 * 20 11 10 37 37 H 1.09003 * 117.50265 * 107.50336 * 21 20 11 38 38 H 1.08998 * 117.50058 * 252.51991 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0015 6 6 3.8456 3.0484 -0.0011 7 1 3.1793 3.6695 0.5974 8 6 3.8821 3.5759 -1.4368 9 7 5.1983 3.0898 0.5703 10 6 5.4857 4.4095 1.1479 11 6 6.8416 4.3723 1.8557 12 6 7.9202 3.5882 1.1537 13 1 8.0582 2.5405 1.3767 14 6 8.7308 4.2083 0.2266 15 7 9.6319 3.5108 -0.4300 16 14 8.5492 6.0392 -0.0966 17 1 9.4178 6.7958 0.8406 18 1 8.9515 6.3374 -1.4946 19 1 7.1339 6.4398 0.1074 20 6 7.2672 5.6193 2.6333 21 6 6.8396 4.3581 3.3863 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.3879 2.1185 0.0004 28 1 2.8685 3.6140 -1.8358 29 1 4.3138 4.5768 -1.4453 30 1 4.4902 2.9128 -2.0522 31 1 5.8902 2.8387 -0.1198 32 1 4.7079 4.6690 1.8662 33 1 5.5106 5.1559 0.3540 34 1 10.2019 3.9471 -1.0825 35 1 8.3274 5.8726 2.6370 36 1 6.5814 6.4665 2.6402 37 1 7.6184 3.7816 3.8856 38 1 5.8723 4.3753 3.8885 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:51 Heat of formation + Delta-G solvation = -14.637097 kcal Electronic energy + Delta-G solvation = -17629.391435 eV Core-core repulsion = 14893.535464 eV Total energy + Delta-G solvation = -2735.855970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.52484 -37.30640 -35.34667 -34.71592 -32.00738 -30.87341 -29.36985 -25.82420 -24.89116 -23.73666 -21.99489 -21.54359 -19.98040 -18.96491 -16.96292 -16.02690 -15.90707 -15.43398 -14.82705 -14.68347 -14.23693 -13.80258 -13.60647 -13.40644 -12.65530 -12.63215 -12.40067 -12.17262 -11.95620 -11.88390 -11.74988 -11.52967 -11.14513 -11.05499 -10.66265 -10.33436 -10.05977 -9.55063 -9.30049 -8.96550 -8.92942 -8.55097 -8.36886 -7.52320 -6.02514 -4.03588 3.01688 3.29778 3.31141 3.40549 3.44029 4.46756 4.73319 4.84811 4.95032 5.07080 5.14747 5.19394 5.24721 5.32348 5.36492 5.66551 5.74444 5.80107 5.85034 5.89096 5.95285 6.13038 6.20065 6.29238 6.36546 6.54416 6.56643 6.58458 6.81588 7.05874 7.21504 7.60600 7.81768 7.90646 8.27535 8.58055 8.65011 9.07677 9.60332 11.09252 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032062 B = 0.006001 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.088555 B = 4664.992800 C = 4854.284125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.742 5.742 4 C 0.520 3.480 5 O -0.516 6.516 6 C 0.067 3.933 7 H 0.088 0.912 8 C -0.176 4.176 9 N -0.652 5.652 10 C 0.099 3.901 11 C 0.009 3.991 12 C -0.475 4.475 13 H 0.082 0.918 14 C 0.073 3.927 15 N -0.898 5.898 16 Si 0.879 3.121 17 H -0.280 1.280 18 H -0.298 1.298 19 H -0.261 1.261 20 C -0.209 4.209 21 C -0.175 4.175 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.396 0.604 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.369 0.631 32 H 0.047 0.953 33 H 0.022 0.978 34 H 0.263 0.737 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.020 0.485 -0.413 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.397 5.397 4 C 0.305 3.695 5 O -0.389 6.389 6 C -0.047 4.047 7 H 0.106 0.894 8 C -0.236 4.236 9 N -0.287 5.287 10 C -0.030 4.030 11 C 0.008 3.992 12 C -0.512 4.512 13 H 0.100 0.900 14 C -0.128 4.128 15 N -0.535 5.535 16 Si 0.707 3.293 17 H -0.206 1.206 18 H -0.226 1.226 19 H -0.185 1.185 20 C -0.246 4.246 21 C -0.212 4.212 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.229 0.771 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.192 0.808 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.436 -0.500 0.039 17.444 hybrid contribution -0.202 1.972 -0.991 2.216 sum -17.638 1.472 -0.952 17.725 Atomic orbital electron populations 1.21993 0.94842 1.02931 1.02301 1.21217 0.93742 0.83678 1.02279 1.46111 1.07387 1.08298 1.77874 1.20829 0.81517 0.91884 0.75254 1.90707 1.55070 1.46200 1.46885 1.21444 0.95310 0.92505 0.95476 0.89412 1.22428 1.02176 1.02405 0.96581 1.60079 1.00335 1.28897 1.39358 1.21614 0.96556 0.88258 0.96565 1.19370 0.94147 0.95670 0.90020 1.20288 1.12315 0.97535 1.21102 0.89982 1.25015 0.94861 0.97628 0.95334 1.69917 1.21870 1.35951 1.25796 0.86903 0.79300 0.86683 0.76372 1.20625 1.22568 1.18546 1.22983 1.00566 0.91862 1.09238 1.22815 1.00483 1.00855 0.97083 0.92161 0.91059 0.92088 0.91832 0.91680 0.77093 0.92383 0.91388 0.91539 0.80762 0.93415 0.95988 0.92742 0.89606 0.91248 0.89763 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.03 37.16 0.37 -0.75 16 2 C 0.11 1.23 6.39 -4.04 -0.03 1.20 16 3 N -0.74 -8.75 5.56 -60.30 -0.33 -9.09 16 4 C 0.52 8.57 7.05 -10.99 -0.08 8.50 16 5 O -0.52 -11.06 16.61 5.56 0.09 -10.97 16 6 C 0.07 1.06 2.99 -68.86 -0.21 0.86 16 7 H 0.09 1.17 7.70 -51.93 -0.40 0.77 16 8 C -0.18 -2.46 9.16 37.16 0.34 -2.12 16 9 N -0.65 -13.41 5.61 -107.95 -0.61 -14.02 16 10 C 0.10 2.03 5.53 -3.83 -0.02 2.01 16 11 C 0.01 0.21 1.23 -155.62 -0.19 0.02 16 12 C -0.47 -13.21 8.10 -34.44 -0.28 -13.48 16 13 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 16 Si 0.88 21.59 24.85 -169.99 -4.22 17.37 16 17 H -0.28 -6.84 7.07 56.52 0.40 -6.44 16 18 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 19 H -0.26 -6.02 5.63 56.52 0.32 -5.70 16 20 C -0.21 -4.50 7.37 -26.73 -0.20 -4.70 16 21 C -0.18 -3.71 9.88 -26.70 -0.26 -3.97 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.40 3.39 8.47 -40.82 -0.35 3.04 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.97 7.52 -51.93 -0.39 0.58 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.37 8.61 7.47 -39.29 -0.29 8.31 16 32 H 0.05 0.87 7.72 -51.93 -0.40 0.47 16 33 H 0.02 0.45 6.29 -51.93 -0.33 0.13 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.09 1.95 6.78 -51.93 -0.35 1.60 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 38 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -32.66 309.27 -6.66 -39.32 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.38 Total: 9.74 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -0.65 Total: -10.46 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.17 Total: -49.65 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.22 Total: 17.37 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.66 -6.66 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.684 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds