Wall clock time and date at job start Mon Mar 30 2020 04:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46873 * 2 1 4 4 C 1.34777 * 120.00042 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99864 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00053 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47189 * 35.61515 * 6 4 3 8 8 C 1.53000 * 109.47451 * 275.61156 * 6 4 3 9 9 N 1.46906 * 109.47132 * 155.61185 * 6 4 3 10 10 C 1.46895 * 111.00072 * 205.77134 * 9 6 4 11 11 C 1.53002 * 109.47316 * 174.30959 * 10 9 6 12 12 C 1.50700 * 115.55793 * 39.69948 * 11 10 9 13 13 H 1.08001 * 119.99758 * 268.77530 * 12 11 10 14 14 C 1.37876 * 120.00111 * 88.77444 * 12 11 10 15 15 N 1.31517 * 119.99957 * 183.07180 * 14 12 11 16 16 Si 1.86802 * 119.99929 * 3.07322 * 14 12 11 17 17 H 1.48499 * 109.46998 * 88.74233 * 16 14 12 18 18 H 1.48499 * 109.47158 * 208.74327 * 16 14 12 19 19 H 1.48497 * 109.46766 * 328.74450 * 16 14 12 20 20 C 1.53000 * 117.50280 * 185.38999 * 11 10 9 21 21 C 1.52994 * 60.03171 * 107.47894 * 20 11 10 22 22 H 1.08995 * 109.47223 * 59.99944 * 1 2 3 23 23 H 1.08998 * 109.46886 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47197 * 299.99339 * 1 2 3 25 25 H 1.09000 * 109.47197 * 240.00660 * 2 1 3 26 26 H 1.08995 * 109.47223 * 120.00056 * 2 1 3 27 27 H 0.96998 * 120.00139 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.47095 * 64.12105 * 8 6 4 29 29 H 1.09004 * 109.47014 * 184.12076 * 8 6 4 30 30 H 1.08996 * 109.47091 * 304.11812 * 8 6 4 31 31 H 1.00896 * 110.99737 * 81.81740 * 9 6 4 32 32 H 1.09005 * 109.47207 * 54.31437 * 10 9 6 33 33 H 1.08994 * 109.47367 * 294.31461 * 10 9 6 34 34 H 0.97003 * 119.99518 * 179.97438 * 15 14 12 35 35 H 1.09005 * 117.49561 * 214.98229 * 20 11 10 36 36 H 1.08993 * 117.49550 * 359.97208 * 20 11 10 37 37 H 1.09003 * 117.50265 * 107.50336 * 21 20 11 38 38 H 1.08998 * 117.50058 * 252.51991 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0015 6 6 3.8456 3.0484 -0.0011 7 1 3.1793 3.6695 0.5974 8 6 3.8821 3.5759 -1.4368 9 7 5.1983 3.0898 0.5703 10 6 5.4857 4.4095 1.1479 11 6 6.8416 4.3723 1.8557 12 6 7.9202 3.5882 1.1537 13 1 8.0582 2.5405 1.3767 14 6 8.7308 4.2083 0.2266 15 7 9.6319 3.5108 -0.4300 16 14 8.5492 6.0392 -0.0966 17 1 9.4178 6.7958 0.8406 18 1 8.9515 6.3374 -1.4946 19 1 7.1339 6.4398 0.1074 20 6 7.2672 5.6193 2.6333 21 6 6.8396 4.3581 3.3863 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.3879 2.1185 0.0004 28 1 2.8685 3.6140 -1.8358 29 1 4.3138 4.5768 -1.4453 30 1 4.4902 2.9128 -2.0522 31 1 5.8902 2.8387 -0.1198 32 1 4.7079 4.6690 1.8662 33 1 5.5106 5.1559 0.3540 34 1 10.2019 3.9471 -1.0825 35 1 8.3274 5.8726 2.6370 36 1 6.5814 6.4665 2.6402 37 1 7.6184 3.7816 3.8856 38 1 5.8723 4.3753 3.8885 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:50 Heat of formation + Delta-G solvation = -40.471928 kcal Electronic energy + Delta-G solvation = -17630.511717 eV Core-core repulsion = 14893.535464 eV Total energy + Delta-G solvation = -2736.976253 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80888 -38.98216 -36.57316 -36.05585 -34.17465 -31.97124 -30.50717 -27.79268 -26.37772 -24.91850 -23.26151 -23.01224 -21.25840 -20.77945 -18.48322 -17.75241 -17.14066 -16.76139 -16.49178 -16.01075 -15.53987 -15.35404 -14.90803 -14.73619 -14.69578 -13.96001 -13.47732 -13.41196 -13.26875 -13.18972 -12.95117 -12.65247 -12.54393 -12.41503 -12.28421 -12.04062 -11.88174 -11.39208 -10.91922 -10.79383 -10.50934 -10.20344 -10.03302 -9.03503 -8.21958 -6.27407 1.38073 1.39016 1.52318 1.73548 2.22591 2.40878 3.11045 3.19255 3.62604 3.88182 4.06638 4.16472 4.20552 4.23562 4.26667 4.42806 4.51770 4.54856 4.68211 4.73514 4.79324 4.89929 4.94231 4.99241 5.08609 5.12969 5.17107 5.28381 5.36058 5.53330 5.55697 5.79075 6.29326 6.42968 6.56544 6.71377 6.83826 7.39806 7.40762 8.94351 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032062 B = 0.006001 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.088555 B = 4664.992800 C = 4854.284125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.109 3.891 3 N -0.719 5.719 4 C 0.516 3.484 5 O -0.579 6.579 6 C 0.067 3.933 7 H 0.125 0.875 8 C -0.169 4.169 9 N -0.677 5.677 10 C 0.108 3.892 11 C -0.023 4.023 12 C -0.468 4.468 13 H 0.021 0.979 14 C 0.015 3.985 15 N -0.954 5.954 16 Si 0.944 3.056 17 H -0.274 1.274 18 H -0.304 1.304 19 H -0.226 1.226 20 C -0.195 4.195 21 C -0.167 4.167 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.416 0.584 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.345 0.655 32 H 0.081 0.919 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.696 3.272 0.141 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 N -0.373 5.373 4 C 0.302 3.698 5 O -0.457 6.457 6 C -0.047 4.047 7 H 0.143 0.857 8 C -0.229 4.229 9 N -0.309 5.309 10 C -0.021 4.021 11 C -0.024 4.024 12 C -0.506 4.506 13 H 0.040 0.960 14 C -0.181 4.181 15 N -0.594 5.594 16 Si 0.769 3.231 17 H -0.200 1.200 18 H -0.232 1.232 19 H -0.149 1.149 20 C -0.233 4.233 21 C -0.204 4.204 22 H 0.092 0.908 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.253 0.747 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.165 0.835 32 H 0.099 0.901 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.214 2.316 0.627 21.349 hybrid contribution 0.909 0.941 -1.108 1.714 sum -20.305 3.257 -0.481 20.570 Atomic orbital electron populations 1.21929 0.91241 1.04167 1.03495 1.21347 0.96558 0.82676 1.00874 1.45942 1.06171 1.09674 1.75540 1.21104 0.82531 0.91669 0.74513 1.90689 1.56990 1.47894 1.50171 1.21600 0.93367 0.92669 0.97042 0.85707 1.22353 1.04046 1.01442 0.95017 1.59998 1.01949 1.29342 1.39611 1.21544 0.95394 0.88218 0.96969 1.19410 0.94484 0.97166 0.91318 1.20318 1.13700 0.95356 1.21238 0.96049 1.25876 0.94374 1.02821 0.95057 1.70094 1.23711 1.38337 1.27293 0.85846 0.81156 0.80264 0.75790 1.20011 1.23175 1.14905 1.23015 1.00527 0.92384 1.07350 1.22852 1.01618 1.00378 0.95572 0.90772 0.89893 0.90963 0.93143 0.93435 0.74674 0.88517 0.91278 0.94156 0.83526 0.90067 0.95661 0.92885 0.91254 0.87498 0.91570 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.03 71.98 0.72 -0.90 16 2 C 0.11 2.21 6.39 86.38 0.55 2.76 16 3 N -0.72 -15.41 5.56 -463.07 -2.57 -17.98 16 4 C 0.52 16.63 7.05 87.66 0.62 17.25 16 5 O -0.58 -25.84 16.61 -3.02 -0.05 -25.89 16 6 C 0.07 1.97 2.99 44.17 0.13 2.10 16 7 H 0.13 2.73 7.70 -2.39 -0.02 2.71 16 8 C -0.17 -4.35 9.16 71.98 0.66 -3.69 16 9 N -0.68 -27.54 5.61 -495.46 -2.78 -30.32 16 10 C 0.11 4.10 5.53 86.30 0.48 4.57 16 11 C -0.02 -1.03 1.23 -52.90 -0.07 -1.09 16 12 C -0.47 -27.05 8.10 25.60 0.21 -26.85 16 13 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 14 C 0.02 0.88 5.47 84.65 0.46 1.34 16 15 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 16 Si 0.94 44.28 24.85 68.60 1.70 45.99 16 17 H -0.27 -12.55 7.07 99.48 0.70 -11.84 16 18 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 19 H -0.23 -9.29 5.63 99.48 0.56 -8.73 16 20 C -0.20 -7.76 7.37 30.59 0.23 -7.53 16 21 C -0.17 -6.71 9.88 30.62 0.30 -6.41 16 22 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.42 5.49 8.47 -92.71 -0.79 4.70 16 28 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.77 7.52 -2.38 -0.02 1.76 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.34 16.76 7.47 -89.70 -0.67 16.09 16 32 H 0.08 2.54 7.72 -2.38 -0.02 2.53 16 33 H 0.03 0.94 6.29 -2.39 -0.02 0.93 16 34 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.07 2.99 6.78 -2.38 -0.02 2.97 16 36 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.10 3.47 8.08 -2.39 -0.02 3.45 16 Total: -1.00 -77.01 309.27 0.33 -76.68 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.56 Total: 30.71 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 4.29 Total: -18.45 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -5.06 Total: -109.04 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.70 Total: 45.99 kcal Total: -77.01 0.33 -76.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.209 kcal (2) G-P(sol) polarization free energy of solvation -77.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds