Wall clock time and date at job start Mon Mar 30 2020 03:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47291 * 2 1 4 4 C 1.50701 * 109.47159 * 120.00434 * 2 1 3 5 5 H 1.07998 * 120.00676 * 119.99587 * 4 2 1 6 6 C 1.37877 * 119.99812 * 300.00078 * 4 2 1 7 7 N 1.31513 * 120.00098 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00090 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47077 * 90.00293 * 8 6 4 10 10 H 1.48499 * 109.47589 * 210.00370 * 8 6 4 11 11 H 1.48498 * 109.47155 * 330.00187 * 8 6 4 12 12 N 1.46500 * 109.47073 * 239.99774 * 2 1 3 13 13 C 1.34786 * 119.99666 * 85.00298 * 12 2 1 14 14 O 1.21281 * 119.99647 * 359.97438 * 13 12 2 15 15 C 1.50690 * 119.99773 * 179.97438 * 13 12 2 16 16 H 1.09003 * 110.06199 * 332.21903 * 15 13 12 17 17 C 1.54274 * 110.03313 * 210.80478 * 15 13 12 18 18 C 1.54891 * 104.19784 * 217.10989 * 17 15 13 19 19 C 1.54886 * 102.74848 * 37.93714 * 18 17 15 20 20 C 1.53880 * 110.03587 * 93.63787 * 15 13 12 21 21 H 1.08990 * 110.03309 * 238.61648 * 20 15 13 22 22 C 1.53002 * 110.02922 * 359.97438 * 20 15 13 23 23 N 1.46898 * 109.47195 * 184.16728 * 22 20 15 24 24 H 1.08994 * 109.46699 * 59.99608 * 1 2 3 25 25 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46918 * 299.99597 * 1 2 3 27 27 H 0.97004 * 119.99841 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00734 * 265.00246 * 12 2 1 29 29 H 1.08999 * 110.48275 * 335.78316 * 17 15 13 30 30 H 1.08993 * 110.48674 * 98.42766 * 17 15 13 31 31 H 1.08989 * 110.75664 * 156.25627 * 18 17 15 32 32 H 1.09002 * 110.75211 * 279.43985 * 18 17 15 33 33 H 1.09005 * 110.48652 * 203.38444 * 19 18 17 34 34 H 1.08998 * 110.48907 * 80.73790 * 19 18 17 35 35 H 1.09001 * 109.47104 * 64.16811 * 22 20 15 36 36 H 1.08998 * 109.47021 * 304.17082 * 22 20 15 37 37 H 1.00901 * 110.99616 * 56.04951 * 23 22 20 38 38 H 1.00900 * 110.99797 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8492 2.1772 1.4924 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0182 -2.3572 14 8 1.8583 1.1584 -2.4116 15 6 2.6500 -0.7285 -3.5874 16 1 3.2975 -1.5576 -3.3021 17 6 3.4208 0.2578 -4.4891 18 6 3.0489 -0.1739 -5.9293 19 6 1.5547 -0.5593 -5.7955 20 6 1.4635 -1.2481 -4.4181 21 1 1.5347 -2.3293 -4.5351 22 6 0.1447 -0.8814 -3.7346 23 7 -0.9747 -1.4680 -4.4835 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.9040 -0.5276 4.4375 28 1 2.2491 -1.6318 -1.1527 29 1 3.0949 1.2808 -4.3013 30 1 4.4946 0.1629 -4.3276 31 1 3.1730 0.6555 -6.6254 32 1 3.6453 -1.0311 -6.2418 33 1 1.2666 -1.2506 -6.5875 34 1 0.9273 0.3317 -5.8187 35 1 0.0371 0.2030 -3.7105 36 1 0.1433 -1.2694 -2.7160 37 1 -0.8644 -2.4667 -4.5754 38 1 -1.8576 -1.2403 -4.0514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084310559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:52 Heat of formation + Delta-G solvation = -53.900760 kcal Electronic energy + Delta-G solvation = -18192.800841 eV Core-core repulsion = 15455.242270 eV Total energy + Delta-G solvation = -2737.558570 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06800 -37.28048 -34.97472 -33.99955 -32.40295 -30.42632 -28.75840 -28.48701 -25.22420 -23.59282 -22.24987 -20.54238 -20.04036 -19.05251 -17.08697 -16.39103 -16.10302 -15.38340 -15.11247 -14.73413 -14.42682 -13.89228 -13.72732 -13.39050 -13.02778 -12.86318 -12.24057 -12.09901 -11.76422 -11.50229 -11.30782 -10.96043 -10.93225 -10.84783 -10.83141 -10.52824 -10.46550 -10.21389 -9.71362 -9.25266 -9.01940 -8.79391 -8.65323 -8.10799 -6.23006 -4.25439 3.20363 3.24796 3.33461 3.38012 3.96740 4.29585 4.43480 4.63881 4.76583 4.97514 5.11838 5.32254 5.45723 5.48544 5.56858 5.61507 5.67559 5.74091 5.92700 6.01642 6.04872 6.14898 6.26360 6.27871 6.34255 6.44214 6.50333 6.53525 6.82976 7.11360 7.17362 7.30131 7.42536 7.51208 8.15221 8.53389 8.74695 8.96343 9.38226 10.89233 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034904 B = 0.006613 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.004774 B = 4233.309893 C = 4513.967802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.704 5.704 13 C 0.513 3.487 14 O -0.555 6.555 15 C -0.112 4.112 16 H 0.087 0.913 17 C -0.112 4.112 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.073 4.073 21 H 0.073 0.927 22 C 0.052 3.948 23 N -0.848 5.848 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.267 0.733 28 H 0.394 0.606 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.335 0.665 38 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -2.339 -15.981 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.351 5.351 13 C 0.298 3.702 14 O -0.434 6.434 15 C -0.135 4.135 16 H 0.106 0.894 17 C -0.150 4.150 18 C -0.164 4.164 19 C -0.140 4.140 20 C -0.092 4.092 21 H 0.092 0.908 22 C -0.079 4.079 23 N -0.376 5.376 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.227 0.773 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.146 0.854 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.519 -1.033 -16.367 16.470 hybrid contribution -0.674 -0.387 1.372 1.577 sum -2.194 -1.420 -14.994 15.220 Atomic orbital electron populations 1.22445 0.99526 1.00567 0.99232 1.19072 0.89963 0.94696 0.83010 0.93448 1.21053 1.33222 1.14400 0.88592 0.90257 1.24838 0.95510 0.96684 0.95543 1.69871 1.44916 1.40131 0.98044 0.86877 0.80468 0.83662 0.77476 1.20375 1.22113 1.18668 1.46288 1.65285 1.13700 1.09855 1.20331 0.77978 0.87360 0.84501 1.90627 1.51578 1.16161 1.85037 1.22022 0.97776 0.99241 0.94427 0.89443 1.22344 0.99036 1.00183 0.93425 1.22522 0.96575 1.00639 0.96627 1.22259 0.95799 1.00412 0.95515 1.21639 0.92806 0.99684 0.95073 0.90824 1.22201 0.90001 1.01013 0.94647 1.58768 1.04926 1.16741 1.57214 0.94666 0.93068 0.93500 0.92290 0.77328 0.89574 0.91651 0.91607 0.91804 0.91750 0.91136 0.89943 0.94379 0.85368 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.97 37.16 0.33 -3.21 16 2 C 0.24 5.62 2.15 -69.08 -0.15 5.47 16 3 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 4 C -0.53 -14.46 9.31 -34.44 -0.32 -14.78 16 5 H 0.08 2.25 7.98 -52.49 -0.42 1.84 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 8 Si 0.89 21.86 24.37 -169.99 -4.14 17.72 16 9 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 12 N -0.70 -13.82 4.53 -54.93 -0.25 -14.07 16 13 C 0.51 9.50 4.66 -10.99 -0.05 9.45 16 14 O -0.55 -12.24 14.66 5.56 0.08 -12.16 16 15 C -0.11 -1.57 3.29 -90.65 -0.30 -1.87 16 16 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.11 -1.47 6.31 -25.07 -0.16 -1.63 16 18 C -0.13 -1.36 6.91 -24.74 -0.17 -1.53 16 19 C -0.10 -1.19 6.17 -25.07 -0.15 -1.34 16 20 C -0.07 -0.91 3.09 -89.50 -0.28 -1.18 16 21 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 22 C 0.05 0.73 4.89 -3.82 -0.02 0.71 16 23 N -0.85 -9.77 9.43 -10.37 -0.10 -9.87 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 28 H 0.39 6.90 8.54 -40.82 -0.35 6.55 16 29 H 0.09 1.34 6.89 -51.93 -0.36 0.98 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.66 8.14 -51.94 -0.42 0.23 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 35 H 0.08 1.39 7.08 -51.93 -0.37 1.02 16 36 H 0.04 0.59 6.87 -51.93 -0.36 0.23 16 37 H 0.33 3.29 8.99 -39.29 -0.35 2.93 16 38 H 0.34 3.65 9.08 -39.29 -0.36 3.30 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -30.67 295.21 -6.59 -37.26 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.04 Total: 10.19 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.36 Total: -7.83 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.43 Total: -49.63 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.67 -6.59 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084310559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.641 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds