Wall clock time and date at job start Mon Mar 30 2020 03:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47291 * 2 1 4 4 C 1.50701 * 109.47159 * 120.00434 * 2 1 3 5 5 H 1.07998 * 120.00676 * 119.99587 * 4 2 1 6 6 C 1.37877 * 119.99812 * 300.00078 * 4 2 1 7 7 N 1.31513 * 120.00098 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00090 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47077 * 90.00293 * 8 6 4 10 10 H 1.48499 * 109.47589 * 210.00370 * 8 6 4 11 11 H 1.48498 * 109.47155 * 330.00187 * 8 6 4 12 12 N 1.46500 * 109.47073 * 239.99774 * 2 1 3 13 13 C 1.34786 * 119.99666 * 85.00298 * 12 2 1 14 14 O 1.21281 * 119.99647 * 359.97438 * 13 12 2 15 15 C 1.50690 * 119.99773 * 179.97438 * 13 12 2 16 16 H 1.09003 * 110.06199 * 332.21903 * 15 13 12 17 17 C 1.54274 * 110.03313 * 210.80478 * 15 13 12 18 18 C 1.54891 * 104.19784 * 217.10989 * 17 15 13 19 19 C 1.54886 * 102.74848 * 37.93714 * 18 17 15 20 20 C 1.53880 * 110.03587 * 93.63787 * 15 13 12 21 21 H 1.08990 * 110.03309 * 238.61648 * 20 15 13 22 22 C 1.53002 * 110.02922 * 359.97438 * 20 15 13 23 23 N 1.46898 * 109.47195 * 184.16728 * 22 20 15 24 24 H 1.08994 * 109.46699 * 59.99608 * 1 2 3 25 25 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46918 * 299.99597 * 1 2 3 27 27 H 0.97004 * 119.99841 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00734 * 265.00246 * 12 2 1 29 29 H 1.08999 * 110.48275 * 335.78316 * 17 15 13 30 30 H 1.08993 * 110.48674 * 98.42766 * 17 15 13 31 31 H 1.08989 * 110.75664 * 156.25627 * 18 17 15 32 32 H 1.09002 * 110.75211 * 279.43985 * 18 17 15 33 33 H 1.09005 * 110.48652 * 203.38444 * 19 18 17 34 34 H 1.08998 * 110.48907 * 80.73790 * 19 18 17 35 35 H 1.09001 * 109.47104 * 64.16811 * 22 20 15 36 36 H 1.08998 * 109.47021 * 304.17082 * 22 20 15 37 37 H 1.00901 * 110.99616 * 56.04951 * 23 22 20 38 38 H 1.00900 * 110.99797 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8492 2.1772 1.4924 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0182 -2.3572 14 8 1.8583 1.1584 -2.4116 15 6 2.6500 -0.7285 -3.5874 16 1 3.2975 -1.5576 -3.3021 17 6 3.4208 0.2578 -4.4891 18 6 3.0489 -0.1739 -5.9293 19 6 1.5547 -0.5593 -5.7955 20 6 1.4635 -1.2481 -4.4181 21 1 1.5347 -2.3293 -4.5351 22 6 0.1447 -0.8814 -3.7346 23 7 -0.9747 -1.4680 -4.4835 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.9040 -0.5276 4.4375 28 1 2.2491 -1.6318 -1.1527 29 1 3.0949 1.2808 -4.3013 30 1 4.4946 0.1629 -4.3276 31 1 3.1730 0.6555 -6.6254 32 1 3.6453 -1.0311 -6.2418 33 1 1.2666 -1.2506 -6.5875 34 1 0.9273 0.3317 -5.8187 35 1 0.0371 0.2030 -3.7105 36 1 0.1433 -1.2694 -2.7160 37 1 -0.8644 -2.4667 -4.5754 38 1 -1.8576 -1.2403 -4.0514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084310559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:51 Heat of formation + Delta-G solvation = -77.670871 kcal Electronic energy + Delta-G solvation = -18193.831590 eV Core-core repulsion = 15455.242270 eV Total energy + Delta-G solvation = -2738.589320 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42395 -38.58391 -36.75534 -35.02380 -34.40571 -32.10759 -29.91131 -29.56913 -27.26587 -24.69447 -23.79795 -21.70584 -21.50072 -20.50264 -18.80098 -17.74222 -17.66854 -16.97486 -16.43542 -15.88557 -15.79175 -15.26770 -15.07488 -14.88824 -14.48561 -14.40264 -14.15175 -13.78281 -13.24558 -12.94159 -12.85332 -12.56482 -12.18720 -12.04057 -11.85178 -11.79966 -11.68969 -11.50623 -11.43952 -11.31336 -10.90237 -10.56948 -9.92669 -9.55817 -8.41259 -6.46876 1.23162 1.32123 1.41313 1.77608 2.22682 2.47306 2.94924 3.42472 3.61178 3.72164 3.93240 4.22186 4.32796 4.41356 4.45921 4.52646 4.57139 4.60503 4.64971 4.68676 4.75113 4.93150 4.93862 4.98004 5.12207 5.24898 5.27945 5.34028 5.39398 5.42081 5.56953 5.65705 6.11813 6.15944 6.55019 6.58954 6.88928 7.16976 7.47183 8.74029 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034904 B = 0.006613 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.004774 B = 4233.309893 C = 4513.967802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.242 3.758 3 H 0.018 0.982 4 C -0.533 4.533 5 H 0.057 0.943 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.937 3.063 9 H -0.260 1.260 10 H -0.291 1.291 11 H -0.265 1.265 12 N -0.703 5.703 13 C 0.513 3.487 14 O -0.593 6.593 15 C -0.107 4.107 16 H 0.113 0.887 17 C -0.115 4.115 18 C -0.116 4.116 19 C -0.099 4.099 20 C -0.069 4.069 21 H 0.101 0.899 22 C 0.059 3.941 23 N -0.843 5.843 24 H 0.042 0.958 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.271 0.729 28 H 0.405 0.595 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.022 0.978 37 H 0.348 0.652 38 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -3.276 -17.950 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.137 3.863 3 H 0.036 0.964 4 C -0.571 4.571 5 H 0.075 0.925 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.765 3.235 9 H -0.185 1.185 10 H -0.218 1.218 11 H -0.190 1.190 12 N -0.351 5.351 13 C 0.301 3.699 14 O -0.474 6.474 15 C -0.129 4.129 16 H 0.131 0.869 17 C -0.153 4.153 18 C -0.153 4.153 19 C -0.137 4.137 20 C -0.088 4.088 21 H 0.119 0.881 22 C -0.072 4.072 23 N -0.373 5.373 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.240 0.760 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.162 0.838 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.843 -2.001 -18.363 18.563 hybrid contribution -0.533 -0.116 1.950 2.025 sum -2.376 -2.117 -16.413 16.719 Atomic orbital electron populations 1.22308 0.98008 1.01388 0.99188 1.18709 0.91046 0.93031 0.83478 0.96376 1.21266 1.32324 1.13568 0.89934 0.92474 1.25539 0.96830 0.99225 0.95398 1.69971 1.46631 1.41889 0.98649 0.86028 0.79840 0.80472 0.77165 1.18536 1.21821 1.19032 1.46142 1.65603 1.14181 1.09193 1.21142 0.76699 0.86947 0.85146 1.90610 1.53028 1.18145 1.85662 1.22129 0.98901 0.99695 0.92204 0.86920 1.22369 0.99608 0.98280 0.95091 1.22502 0.96038 1.01842 0.94905 1.22229 0.96165 0.99857 0.95435 1.21703 0.90959 1.01255 0.94905 0.88074 1.21998 0.91881 0.98933 0.94406 1.58709 1.04393 1.17708 1.56475 0.93874 0.91791 0.94264 0.92021 0.75989 0.92646 0.90370 0.90812 0.89340 0.89817 0.93312 0.93411 0.96019 0.83837 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.58 8.97 71.98 0.65 -5.94 16 2 C 0.24 11.57 2.15 44.25 0.10 11.66 16 3 H 0.02 0.99 6.63 -2.39 -0.02 0.97 16 4 C -0.53 -29.11 9.31 25.60 0.24 -28.87 16 5 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 6 C 0.03 1.70 5.45 84.65 0.46 2.16 16 7 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 8 Si 0.94 45.12 24.37 68.60 1.67 46.79 16 9 H -0.26 -11.71 6.87 99.48 0.68 -11.03 16 10 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.27 -12.83 6.53 99.48 0.65 -12.18 16 12 N -0.70 -27.36 4.53 -446.09 -2.02 -29.39 16 13 C 0.51 18.81 4.66 87.65 0.41 19.22 16 14 O -0.59 -26.64 14.66 -3.03 -0.04 -26.68 16 15 C -0.11 -2.79 3.29 -10.81 -0.04 -2.82 16 16 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 17 C -0.12 -2.84 6.31 31.67 0.20 -2.64 16 18 C -0.12 -2.12 6.91 31.88 0.22 -1.90 16 19 C -0.10 -2.04 6.17 31.67 0.20 -1.84 16 20 C -0.07 -1.54 3.09 -10.07 -0.03 -1.57 16 21 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 22 C 0.06 1.58 4.89 86.30 0.42 2.00 16 23 N -0.84 -17.75 9.43 -186.72 -1.76 -19.51 16 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 26 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.40 13.84 8.54 -92.71 -0.79 13.05 16 29 H 0.05 1.72 6.89 -2.39 -0.02 1.70 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.05 1.22 7.77 -2.39 -0.02 1.20 16 35 H 0.05 1.62 7.08 -2.39 -0.02 1.60 16 36 H 0.02 0.65 6.87 -2.39 -0.02 0.63 16 37 H 0.35 5.83 8.99 -89.69 -0.81 5.02 16 38 H 0.34 6.87 9.08 -89.69 -0.81 6.05 16 Total: -1.00 -67.07 295.21 -0.45 -67.52 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -1.41 Total: 27.44 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 2.82 Total: -10.54 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -3.48 Total: -104.52 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.04 Total: -26.68 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.79 kcal Total: -67.07 -0.45 -67.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084310559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.155 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds