Wall clock time and date at job start Mon Mar 30 2020 03:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47078 * 2 1 4 4 C 1.50697 * 109.47312 * 239.99802 * 2 1 3 5 5 H 1.08002 * 120.00269 * 245.13746 * 4 2 1 6 6 C 1.37876 * 120.00009 * 65.13695 * 4 2 1 7 7 N 1.31517 * 119.99729 * 5.51071 * 6 4 2 8 8 Si 1.86795 * 120.00439 * 185.51200 * 6 4 2 9 9 H 1.48494 * 109.47542 * 94.99566 * 8 6 4 10 10 H 1.48501 * 109.47259 * 215.00082 * 8 6 4 11 11 H 1.48505 * 109.47097 * 334.99781 * 8 6 4 12 12 N 1.46498 * 109.46796 * 120.00071 * 2 1 3 13 13 C 1.34781 * 120.00044 * 274.99885 * 12 2 1 14 14 O 1.21280 * 119.99948 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99676 * 180.02562 * 13 12 2 16 16 H 1.08995 * 110.05736 * 333.04746 * 15 13 12 17 17 C 1.54273 * 110.02666 * 211.63517 * 15 13 12 18 18 C 1.54885 * 104.19651 * 217.10314 * 17 15 13 19 19 C 1.54896 * 102.74677 * 37.94743 * 18 17 15 20 20 C 1.53874 * 110.03271 * 94.47588 * 15 13 12 21 21 H 1.09002 * 110.02743 * 238.61503 * 20 15 13 22 22 C 1.52994 * 110.03408 * 359.97438 * 20 15 13 23 23 N 1.46898 * 109.47652 * 183.48255 * 22 20 15 24 24 H 1.08995 * 109.47309 * 294.91311 * 1 2 3 25 25 H 1.09002 * 109.46807 * 54.90538 * 1 2 3 26 26 H 1.08998 * 109.47259 * 174.90418 * 1 2 3 27 27 H 0.97010 * 119.99954 * 179.97438 * 7 6 4 28 28 H 0.97002 * 120.00076 * 95.00103 * 12 2 1 29 29 H 1.08999 * 110.49006 * 335.78759 * 17 15 13 30 30 H 1.09000 * 110.48604 * 98.29681 * 17 15 13 31 31 H 1.09004 * 110.75686 * 156.25547 * 18 17 15 32 32 H 1.08999 * 110.76274 * 279.45070 * 18 17 15 33 33 H 1.08994 * 110.48855 * 203.37973 * 19 18 17 34 34 H 1.08995 * 110.48868 * 80.73102 * 19 18 17 35 35 H 1.08996 * 109.47343 * 63.47847 * 22 20 15 36 36 H 1.09007 * 109.47040 * 303.48289 * 22 20 15 37 37 H 1.00900 * 110.99729 * 56.03918 * 23 22 20 38 38 H 1.00894 * 111.00296 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5831 -1.6344 -1.1335 6 6 1.7889 -0.1809 -2.4799 7 7 1.2143 0.9966 -2.5945 8 14 2.2749 -1.1357 -4.0100 9 1 1.1079 -1.9116 -4.5010 10 1 2.7189 -0.1888 -5.0643 11 1 3.3848 -2.0661 -3.6812 12 7 2.0182 -0.6906 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8590 1.1586 2.4115 15 6 2.6498 -0.7287 3.5875 16 1 2.4138 -1.7911 3.5283 17 6 2.0105 -0.1149 4.8503 18 6 3.1443 -0.1488 5.9048 19 6 4.4012 0.1928 5.0664 20 6 4.1698 -0.5329 3.7250 21 1 4.6717 -1.5005 3.7316 22 6 4.6949 0.3211 2.5693 23 7 6.1566 0.4308 2.6660 24 1 -0.3634 0.4329 0.9320 25 1 -0.3633 0.5909 -0.8409 26 1 -0.3633 -1.0236 -0.0913 27 1 1.0433 1.3693 -3.4736 28 1 2.2489 -1.6318 1.1526 29 1 1.6977 0.9116 4.6592 30 1 1.1628 -0.7160 5.1793 31 1 2.9778 0.6039 6.6755 32 1 3.2303 -1.1409 6.3481 33 1 5.2996 -0.1849 5.5544 34 1 4.4746 1.2690 4.9102 35 1 4.2517 1.3155 2.6217 36 1 4.4276 -0.1462 1.6214 37 1 6.5871 -0.4815 2.6847 38 1 6.5279 0.9902 1.9130 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084310563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:54 Heat of formation + Delta-G solvation = -63.707149 kcal Electronic energy + Delta-G solvation = -18087.367880 eV Core-core repulsion = 15349.384073 eV Total energy + Delta-G solvation = -2737.983807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89818 -37.11084 -34.71368 -33.87350 -32.35303 -29.90205 -28.54530 -28.09732 -25.24502 -23.48251 -22.03969 -20.46389 -20.00014 -18.85051 -16.92391 -16.22508 -15.77978 -15.28342 -14.85983 -14.56555 -14.35487 -13.84093 -13.60628 -13.14663 -12.95342 -12.37007 -11.89881 -11.73595 -11.41863 -11.12513 -11.03732 -10.89979 -10.86820 -10.74945 -10.71772 -10.45313 -10.42262 -10.33355 -10.22783 -9.09070 -8.85962 -8.58496 -8.48845 -7.86607 -6.15929 -4.22785 3.21800 3.29076 3.30631 3.42454 4.11201 4.36909 4.56460 4.73933 4.87790 5.10102 5.18114 5.41249 5.55855 5.62083 5.68305 5.72042 5.77702 5.81833 6.02232 6.13573 6.17700 6.23195 6.38806 6.54424 6.58655 6.79077 6.89790 7.09909 7.26308 7.45896 7.56138 7.57475 7.67716 7.85494 8.06600 8.69599 8.78828 9.16709 9.44601 10.92359 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.006502 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.507013 B = 4305.618784 C = 4805.004694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.712 5.712 13 C 0.511 3.489 14 O -0.554 6.554 15 C -0.113 4.113 16 H 0.083 0.917 17 C -0.112 4.112 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.072 4.072 21 H 0.071 0.929 22 C 0.052 3.948 23 N -0.848 5.848 24 H 0.017 0.983 25 H 0.073 0.927 26 H 0.029 0.971 27 H 0.264 0.736 28 H 0.386 0.614 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.333 0.667 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.298 -5.154 11.847 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.359 5.359 13 C 0.296 3.704 14 O -0.433 6.433 15 C -0.135 4.135 16 H 0.102 0.898 17 C -0.149 4.149 18 C -0.163 4.163 19 C -0.140 4.140 20 C -0.091 4.091 21 H 0.089 0.911 22 C -0.078 4.078 23 N -0.377 5.377 24 H 0.036 0.964 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.218 0.782 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.144 0.856 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.864 -3.792 12.388 13.839 hybrid contribution 0.265 -1.563 -2.014 2.563 sum 5.129 -5.355 10.374 12.752 Atomic orbital electron populations 1.22011 0.98878 0.99472 0.99613 1.18710 0.90615 0.94332 0.80220 0.92964 1.21194 1.36724 1.08871 0.90530 0.92222 1.24895 0.94965 0.94713 0.99040 1.69967 1.42084 1.15791 1.24081 0.86485 0.78708 0.79682 0.82520 1.20538 1.21087 1.19906 1.46607 1.65175 1.13417 1.10678 1.20259 0.77875 0.87587 0.84685 1.90633 1.51461 1.16111 1.85074 1.22032 0.96129 1.00412 0.94958 0.89829 1.22335 0.97251 1.02624 0.92739 1.22520 0.95395 1.00954 0.97475 1.22258 0.96910 1.00932 0.93879 1.21623 0.92773 0.98817 0.95907 0.91052 1.22175 0.87887 1.01273 0.96489 1.58788 1.05459 1.20089 1.53342 0.96384 0.90781 0.95182 0.92590 0.78158 0.89591 0.91867 0.91668 0.91921 0.91842 0.91074 0.89840 0.94138 0.85577 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.25 37.16 0.34 -3.15 16 2 C 0.26 6.66 2.43 -69.09 -0.17 6.49 16 3 H 0.05 1.54 7.56 -51.93 -0.39 1.15 16 4 C -0.53 -14.10 8.67 -34.44 -0.30 -14.40 16 5 H 0.06 1.51 7.72 -52.49 -0.41 1.10 16 6 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 7 N -0.88 -25.06 11.99 55.43 0.66 -24.40 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.71 -14.66 4.60 -54.93 -0.25 -14.91 16 13 C 0.51 10.04 4.66 -10.98 -0.05 9.99 16 14 O -0.55 -13.06 14.60 5.56 0.08 -12.97 16 15 C -0.11 -1.67 3.29 -90.65 -0.30 -1.97 16 16 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.11 -1.54 6.31 -25.07 -0.16 -1.70 16 18 C -0.13 -1.44 6.91 -24.74 -0.17 -1.61 16 19 C -0.10 -1.28 6.16 -25.07 -0.15 -1.44 16 20 C -0.07 -0.98 3.10 -89.51 -0.28 -1.25 16 21 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 22 C 0.05 0.83 4.89 -3.83 -0.02 0.81 16 23 N -0.85 -11.14 9.41 -10.37 -0.10 -11.24 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 1.98 6.84 -51.93 -0.36 1.62 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 28 H 0.39 6.98 8.53 -40.82 -0.35 6.64 16 29 H 0.09 1.40 6.90 -51.93 -0.36 1.04 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 35 H 0.08 1.58 7.01 -51.93 -0.36 1.22 16 36 H 0.04 0.72 6.96 -51.92 -0.36 0.36 16 37 H 0.33 3.75 8.99 -39.29 -0.35 3.39 16 38 H 0.34 4.29 9.08 -39.30 -0.36 3.94 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -29.81 303.22 -7.62 -37.43 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.22 Total: 12.46 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.35 Total: -6.51 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.31 Total: -50.56 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.81 -7.62 -37.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084310563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.281 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds