Wall clock time and date at job start Mon Mar 30 2020 03:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47078 * 2 1 4 4 C 1.50697 * 109.47312 * 239.99802 * 2 1 3 5 5 H 1.08002 * 120.00269 * 245.13746 * 4 2 1 6 6 C 1.37876 * 120.00009 * 65.13695 * 4 2 1 7 7 N 1.31517 * 119.99729 * 5.51071 * 6 4 2 8 8 Si 1.86795 * 120.00439 * 185.51200 * 6 4 2 9 9 H 1.48494 * 109.47542 * 94.99566 * 8 6 4 10 10 H 1.48501 * 109.47259 * 215.00082 * 8 6 4 11 11 H 1.48505 * 109.47097 * 334.99781 * 8 6 4 12 12 N 1.46498 * 109.46796 * 120.00071 * 2 1 3 13 13 C 1.34781 * 120.00044 * 274.99885 * 12 2 1 14 14 O 1.21280 * 119.99948 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99676 * 180.02562 * 13 12 2 16 16 H 1.08995 * 110.05736 * 333.04746 * 15 13 12 17 17 C 1.54273 * 110.02666 * 211.63517 * 15 13 12 18 18 C 1.54885 * 104.19651 * 217.10314 * 17 15 13 19 19 C 1.54896 * 102.74677 * 37.94743 * 18 17 15 20 20 C 1.53874 * 110.03271 * 94.47588 * 15 13 12 21 21 H 1.09002 * 110.02743 * 238.61503 * 20 15 13 22 22 C 1.52994 * 110.03408 * 359.97438 * 20 15 13 23 23 N 1.46898 * 109.47652 * 183.48255 * 22 20 15 24 24 H 1.08995 * 109.47309 * 294.91311 * 1 2 3 25 25 H 1.09002 * 109.46807 * 54.90538 * 1 2 3 26 26 H 1.08998 * 109.47259 * 174.90418 * 1 2 3 27 27 H 0.97010 * 119.99954 * 179.97438 * 7 6 4 28 28 H 0.97002 * 120.00076 * 95.00103 * 12 2 1 29 29 H 1.08999 * 110.49006 * 335.78759 * 17 15 13 30 30 H 1.09000 * 110.48604 * 98.29681 * 17 15 13 31 31 H 1.09004 * 110.75686 * 156.25547 * 18 17 15 32 32 H 1.08999 * 110.76274 * 279.45070 * 18 17 15 33 33 H 1.08994 * 110.48855 * 203.37973 * 19 18 17 34 34 H 1.08995 * 110.48868 * 80.73102 * 19 18 17 35 35 H 1.08996 * 109.47343 * 63.47847 * 22 20 15 36 36 H 1.09007 * 109.47040 * 303.48289 * 22 20 15 37 37 H 1.00900 * 110.99729 * 56.03918 * 23 22 20 38 38 H 1.00894 * 111.00296 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5831 -1.6344 -1.1335 6 6 1.7889 -0.1809 -2.4799 7 7 1.2143 0.9966 -2.5945 8 14 2.2749 -1.1357 -4.0100 9 1 1.1079 -1.9116 -4.5010 10 1 2.7189 -0.1888 -5.0643 11 1 3.3848 -2.0661 -3.6812 12 7 2.0182 -0.6906 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8590 1.1586 2.4115 15 6 2.6498 -0.7287 3.5875 16 1 2.4138 -1.7911 3.5283 17 6 2.0105 -0.1149 4.8503 18 6 3.1443 -0.1488 5.9048 19 6 4.4012 0.1928 5.0664 20 6 4.1698 -0.5329 3.7250 21 1 4.6717 -1.5005 3.7316 22 6 4.6949 0.3211 2.5693 23 7 6.1566 0.4308 2.6660 24 1 -0.3634 0.4329 0.9320 25 1 -0.3633 0.5909 -0.8409 26 1 -0.3633 -1.0236 -0.0913 27 1 1.0433 1.3693 -3.4736 28 1 2.2489 -1.6318 1.1526 29 1 1.6977 0.9116 4.6592 30 1 1.1628 -0.7160 5.1793 31 1 2.9778 0.6039 6.6755 32 1 3.2303 -1.1409 6.3481 33 1 5.2996 -0.1849 5.5544 34 1 4.4746 1.2690 4.9102 35 1 4.2517 1.3155 2.6217 36 1 4.4276 -0.1462 1.6214 37 1 6.5871 -0.4815 2.6847 38 1 6.5279 0.9902 1.9130 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084310563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:54 Heat of formation + Delta-G solvation = -85.747363 kcal Electronic energy + Delta-G solvation = -18088.323616 eV Core-core repulsion = 15349.384073 eV Total energy + Delta-G solvation = -2738.939543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.34039 -38.51867 -36.59938 -35.03055 -34.29960 -31.54509 -29.70779 -29.50840 -27.33754 -24.73366 -23.66339 -21.74501 -21.49190 -20.40250 -18.60207 -17.57852 -17.34322 -17.04338 -16.34636 -15.81661 -15.77060 -15.30170 -14.89921 -14.58088 -14.48806 -14.24224 -13.79425 -13.10956 -13.03211 -12.90436 -12.75608 -12.51094 -12.38698 -12.16620 -12.02017 -11.84448 -11.79733 -11.51842 -11.43067 -11.14003 -10.64762 -10.49633 -9.82064 -9.55622 -8.22146 -6.37242 1.41908 1.42543 1.53279 1.86087 2.33892 2.65608 3.10245 3.43092 3.63808 3.73647 3.95176 4.25548 4.37038 4.47601 4.56769 4.60733 4.66489 4.72700 4.76137 4.85220 4.93186 4.96064 5.03597 5.12773 5.25860 5.33966 5.38533 5.43772 5.57133 5.61561 5.62856 5.89867 6.02748 6.12261 6.57355 6.72229 7.00555 7.30740 7.60148 8.86867 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.006502 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.507013 B = 4305.618784 C = 4805.004694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.271 3.729 3 H -0.002 1.002 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.261 1.261 12 N -0.707 5.707 13 C 0.508 3.492 14 O -0.600 6.600 15 C -0.106 4.106 16 H 0.117 0.883 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.100 4.100 20 C -0.068 4.068 21 H 0.103 0.897 22 C 0.061 3.939 23 N -0.841 5.841 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.265 0.735 28 H 0.402 0.598 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.015 0.985 37 H 0.349 0.651 38 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.479 -8.111 13.015 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.167 3.833 3 H 0.015 0.985 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.795 3.205 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.355 5.355 13 C 0.296 3.704 14 O -0.482 6.482 15 C -0.128 4.128 16 H 0.135 0.865 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.138 4.138 20 C -0.087 4.087 21 H 0.121 0.879 22 C -0.070 4.070 23 N -0.371 5.371 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.237 0.763 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.033 0.967 37 H 0.162 0.838 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.067 -6.794 13.585 16.356 hybrid contribution -0.083 -0.564 -2.353 2.421 sum 5.983 -7.358 11.232 14.701 Atomic orbital electron populations 1.21837 0.98602 0.99822 0.98384 1.18277 0.90761 0.92028 0.82224 0.98450 1.21521 1.36635 1.09192 0.90935 0.90918 1.25825 0.94869 0.95466 1.02452 1.70125 1.43388 1.17561 1.24810 0.85355 0.78780 0.78217 0.78129 1.19763 1.21331 1.18528 1.46366 1.65303 1.14036 1.09817 1.21180 0.76479 0.87123 0.85606 1.90616 1.53191 1.18510 1.85872 1.22136 0.96918 1.01506 0.92245 0.86518 1.22361 0.98955 1.00798 0.93149 1.22500 0.93117 1.02886 0.96634 1.22232 0.98619 0.99305 0.93605 1.21696 0.91791 0.99879 0.95315 0.87874 1.21942 0.89388 0.99144 0.96529 1.58730 1.03838 1.21158 1.53342 0.96531 0.93312 0.93533 0.92612 0.76296 0.93099 0.89980 0.90850 0.88990 0.89674 0.93698 0.94056 0.96686 0.83796 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 9.25 71.98 0.67 -5.82 16 2 C 0.27 14.16 2.43 44.24 0.11 14.26 16 3 H 0.00 -0.15 7.56 -2.39 -0.02 -0.17 16 4 C -0.54 -28.86 8.67 25.60 0.22 -28.64 16 5 H 0.07 3.58 7.72 -2.91 -0.02 3.56 16 6 C 0.01 0.76 5.28 84.65 0.45 1.20 16 7 N -0.92 -53.88 11.99 21.45 0.26 -53.62 16 8 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 12 N -0.71 -29.30 4.60 -446.10 -2.05 -31.35 16 13 C 0.51 20.28 4.66 87.66 0.41 20.68 16 14 O -0.60 -29.90 14.60 -3.03 -0.04 -29.94 16 15 C -0.11 -2.94 3.29 -10.81 -0.04 -2.97 16 16 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 17 C -0.11 -2.97 6.31 31.67 0.20 -2.77 16 18 C -0.11 -2.23 6.91 31.89 0.22 -2.01 16 19 C -0.10 -2.27 6.16 31.67 0.20 -2.08 16 20 C -0.07 -1.68 3.10 -10.07 -0.03 -1.72 16 21 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 22 C 0.06 1.94 4.89 86.30 0.42 2.36 16 23 N -0.84 -21.25 9.41 -186.73 -1.76 -23.01 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 2.70 6.84 -2.39 -0.02 2.68 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 28 H 0.40 14.00 8.53 -92.71 -0.79 13.21 16 29 H 0.05 1.69 6.90 -2.39 -0.02 1.67 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.25 7.79 -2.39 -0.02 1.24 16 35 H 0.04 1.66 7.01 -2.39 -0.02 1.64 16 36 H 0.01 0.54 6.96 -2.38 -0.02 0.53 16 37 H 0.35 7.02 8.99 -89.69 -0.81 6.21 16 38 H 0.34 8.55 9.08 -89.70 -0.81 7.74 16 Total: -1.00 -68.15 303.22 -0.09 -68.24 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -1.34 Total: 33.09 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 2.82 Total: -7.49 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -3.55 Total: -107.98 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.04 Total: -29.94 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -68.15 -0.09 -68.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084310563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.512 kcal (2) G-P(sol) polarization free energy of solvation -68.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds