Wall clock time and date at job start Mon Mar 30 2020 03:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47034 * 2 1 4 4 C 1.46499 * 120.00612 * 89.99471 * 3 2 1 5 5 C 1.50701 * 109.47260 * 270.00459 * 4 3 2 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99694 * 180.27562 * 5 4 3 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 C 1.34779 * 119.99637 * 269.99986 * 3 2 1 14 14 O 1.21287 * 120.00127 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00320 * 359.97438 * 13 3 2 16 16 C 1.52998 * 109.47219 * 180.02562 * 15 13 3 17 17 H 1.09003 * 110.64327 * 305.70200 * 16 15 13 18 18 C 1.54595 * 110.72304 * 182.55211 * 16 15 13 19 19 C 1.53999 * 105.14024 * 219.68476 * 18 16 15 20 20 N 1.47904 * 107.05555 * 358.77044 * 19 18 16 21 21 C 1.48728 * 105.94307 * 25.20607 * 20 19 18 22 22 H 1.08997 * 109.47466 * 300.00465 * 1 2 3 23 23 H 1.09002 * 109.46479 * 60.00355 * 1 2 3 24 24 H 1.08998 * 109.47319 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46965 * 239.99665 * 2 1 3 26 26 H 1.08995 * 109.46771 * 119.99395 * 2 1 3 27 27 H 1.09000 * 109.47197 * 149.99465 * 4 3 2 28 28 H 1.09007 * 109.46342 * 30.00037 * 4 3 2 29 29 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46863 * 300.00852 * 15 13 3 31 31 H 1.09001 * 109.46577 * 60.00116 * 15 13 3 32 32 H 1.09003 * 110.30539 * 338.59497 * 18 16 15 33 33 H 1.08995 * 110.30990 * 100.66631 * 18 16 15 34 34 H 1.08995 * 109.91762 * 118.12602 * 19 18 16 35 35 H 1.09002 * 109.91561 * 239.22168 * 19 18 16 36 36 H 1.00900 * 110.99707 * 145.84160 * 20 19 18 37 37 H 1.09005 * 110.84252 * 202.57230 * 21 20 19 38 38 H 1.09000 * 110.58918 * 79.38203 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0720 1.2686 5 6 1.0066 2.7823 1.7036 6 1 0.1158 2.7253 1.0956 7 6 0.9966 3.5101 2.8745 8 7 2.0814 3.5798 3.6148 9 14 -0.5578 4.3971 3.4097 10 1 -1.3772 3.4929 4.2561 11 1 -0.1937 5.6083 4.1879 12 1 -1.3384 4.7950 2.2108 13 6 2.2430 2.0165 -1.1673 14 8 2.6477 3.1598 -1.1674 15 6 1.9924 1.3059 -2.4724 16 6 2.3242 2.2430 -3.6353 17 1 1.7773 3.1812 -3.5410 18 6 2.0166 1.5643 -4.9898 19 6 3.1714 1.9805 -5.9197 20 7 4.0591 2.8686 -5.1382 21 6 3.8497 2.5031 -3.7118 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.0644 2.7986 1.1383 28 1 2.5505 1.3453 2.0283 29 1 2.0745 4.0921 4.4384 30 1 2.6229 0.4185 -2.5298 31 1 0.9445 1.0113 -2.5302 32 1 1.9962 0.4806 -4.8738 33 1 1.0647 1.9200 -5.3837 34 1 3.7222 1.0982 -6.2456 35 1 2.7775 2.5129 -6.7855 36 1 5.0236 2.7427 -5.4065 37 1 4.1331 3.3256 -3.0550 38 1 4.4069 1.6003 -3.4617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084382414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:11 Heat of formation + Delta-G solvation = -68.098030 kcal Electronic energy + Delta-G solvation = -17822.629470 eV Core-core repulsion = 15084.455260 eV Total energy + Delta-G solvation = -2738.174210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.93478 -39.08345 -36.89443 -34.88922 -33.25566 -31.46727 -30.21401 -29.35022 -27.23782 -24.61391 -24.03691 -22.39952 -21.11884 -19.74606 -18.69608 -17.90656 -17.38990 -16.97403 -16.59444 -16.16467 -15.79535 -14.83096 -14.61923 -14.36385 -14.27635 -13.88669 -13.61344 -13.49183 -13.29222 -13.05082 -12.80293 -12.73529 -12.57269 -12.47970 -12.20521 -12.06369 -11.80158 -11.72347 -11.61116 -11.40771 -10.62347 -10.46394 -9.43705 -9.39449 -8.20940 -6.34252 1.34733 1.37998 1.47927 1.91142 2.33679 2.48302 3.08470 3.33203 3.62275 3.77068 4.00446 4.05220 4.19078 4.30832 4.46193 4.47715 4.56026 4.63996 4.66168 4.82823 4.88047 4.98617 5.02925 5.04350 5.07019 5.10353 5.24697 5.31981 5.36774 5.53909 5.62403 5.86193 5.90617 6.09627 6.46918 6.73384 6.86945 7.31425 7.56857 8.86229 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031423 B = 0.005879 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.857365 B = 4761.340709 C = 5059.202307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.104 3.896 3 N -0.607 5.607 4 C 0.260 3.740 5 C -0.532 4.532 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.964 3.036 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.492 3.508 14 O -0.594 6.594 15 C -0.116 4.116 16 C -0.076 4.076 17 H 0.053 0.947 18 C -0.120 4.120 19 C 0.039 3.961 20 N -0.691 5.691 21 C 0.049 3.951 22 H 0.036 0.964 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.073 0.927 27 H -0.006 1.006 28 H 0.020 0.980 29 H 0.266 0.734 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.344 0.656 37 H 0.052 0.948 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 -11.527 -16.030 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.338 5.338 4 C 0.138 3.862 5 C -0.570 4.570 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.199 1.199 13 C 0.281 3.719 14 O -0.476 6.476 15 C -0.156 4.156 16 C -0.096 4.096 17 H 0.072 0.928 18 C -0.158 4.158 19 C -0.090 4.090 20 N -0.321 5.321 21 C -0.080 4.080 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.091 0.909 27 H 0.012 0.988 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.160 0.840 37 H 0.071 0.929 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.361 -10.294 -15.874 18.968 hybrid contribution 0.033 0.195 1.085 1.103 sum -1.328 -10.099 -14.789 17.957 Atomic orbital electron populations 1.22164 0.95587 1.02827 1.01628 1.21741 0.95178 0.81067 1.03826 1.48330 1.64123 1.15076 1.06286 1.18714 0.95346 0.91485 0.80628 1.21699 0.97890 1.31117 1.06323 0.92767 1.25844 0.99738 0.97097 0.96652 1.70052 1.29558 1.42535 1.14970 0.85469 0.79252 0.78239 0.78179 1.18774 1.20786 1.19908 1.21472 0.77100 0.86564 0.86746 1.90640 1.48361 1.20422 1.88135 1.21778 1.05289 0.99318 0.89170 1.21740 0.95677 0.98017 0.94182 0.92798 1.22491 0.99150 1.01478 0.92651 1.22715 0.94137 0.95295 0.96853 1.62976 1.11451 1.54650 1.03031 1.22976 0.96113 0.99034 0.89885 0.94511 0.92781 0.88942 0.87405 0.90896 0.98769 0.96244 0.92553 0.86321 0.86825 0.88735 0.90219 0.92224 0.90169 0.83972 0.92900 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.54 10.24 71.98 0.74 -3.81 16 2 C 0.10 3.06 5.98 86.38 0.52 3.58 16 3 N -0.61 -25.57 2.46 -826.13 -2.03 -27.60 16 4 C 0.26 14.22 5.20 85.63 0.45 14.66 16 5 C -0.53 -30.93 8.92 25.60 0.23 -30.71 16 6 H 0.05 3.12 7.42 -2.91 -0.02 3.10 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 9 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 13 C 0.49 20.25 7.48 87.66 0.66 20.91 16 14 O -0.59 -31.06 14.27 -3.05 -0.04 -31.10 16 15 C -0.12 -3.07 3.63 29.85 0.11 -2.96 16 16 C -0.08 -2.11 2.63 -9.59 -0.03 -2.13 16 17 H 0.05 1.87 7.97 -2.39 -0.02 1.85 16 18 C -0.12 -2.20 6.51 31.47 0.20 -2.00 16 19 C 0.04 0.71 7.52 86.45 0.65 1.36 16 20 N -0.69 -16.82 7.51 -501.71 -3.77 -20.59 16 21 C 0.05 1.43 6.39 86.61 0.55 1.98 16 22 H 0.04 1.30 7.26 -2.39 -0.02 1.28 16 23 H 0.05 1.43 7.22 -2.39 -0.02 1.41 16 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.11 2.19 6.44 -2.39 -0.02 2.18 16 26 H 0.07 2.15 7.89 -2.39 -0.02 2.13 16 27 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 28 H 0.02 1.09 7.89 -2.38 -0.02 1.07 16 29 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.12 2.35 7.31 -2.39 -0.02 2.33 16 31 H 0.11 2.51 7.19 -2.39 -0.02 2.49 16 32 H 0.09 1.25 7.85 -2.39 -0.02 1.24 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.34 6.92 8.92 -89.69 -0.80 6.12 16 37 H 0.05 1.99 7.24 -2.38 -0.02 1.98 16 38 H 0.05 1.24 7.98 -2.39 -0.02 1.22 16 Total: -1.00 -75.83 305.22 1.25 -74.59 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.24 Total: 12.30 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 4.54 Total: 1.65 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -5.51 Total: -105.24 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.04 Total: -31.10 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -75.83 1.25 -74.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084382414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.487 kcal (2) G-P(sol) polarization free energy of solvation -75.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds