Wall clock time and date at job start Mon Mar 30 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 C 1.34779 * 119.99763 * 239.99831 * 12 2 1 15 15 O 1.21282 * 120.00170 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00024 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.46917 * 179.97438 * 16 14 12 18 18 H 1.09003 * 110.62717 * 56.65482 * 17 16 14 19 19 C 1.55143 * 110.70352 * 179.97438 * 17 16 14 20 20 C 1.54904 * 101.65198 * 154.03575 * 19 17 16 21 21 N 1.47843 * 104.80117 * 322.93401 * 20 19 17 22 22 C 1.47448 * 108.56456 * 24.08949 * 21 20 19 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 28 28 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 29 29 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 30 30 H 1.09004 * 109.47134 * 299.99971 * 16 14 12 31 31 H 1.09001 * 109.46597 * 60.00090 * 16 14 12 32 32 H 1.09001 * 110.99225 * 272.12867 * 19 17 16 33 33 H 1.09001 * 110.99203 * 35.95162 * 19 17 16 34 34 H 1.09003 * 110.38027 * 204.10085 * 20 19 17 35 35 H 1.09004 * 110.46726 * 81.81265 * 20 19 17 36 36 H 1.00898 * 110.99792 * 261.83102 * 21 20 19 37 37 H 1.08997 * 109.89519 * 239.60667 * 22 21 20 38 38 H 1.09009 * 109.88591 * 118.41300 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2953 -0.7459 3.3140 17 6 4.1459 0.2155 4.1464 18 1 3.5758 1.1083 4.4034 19 6 4.6777 -0.4875 5.4230 20 6 5.9612 0.3282 5.7177 21 7 6.5268 0.6363 4.3869 22 6 5.4387 0.5924 3.3928 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7093 1.1618 -3.4844 27 1 2.4157 -2.7377 0.9716 28 1 1.6239 -2.2853 2.5002 29 1 0.6905 -2.3003 0.9847 30 1 2.4472 -1.0881 3.9073 31 1 3.9006 -1.6025 3.0176 32 1 3.9638 -0.4016 6.2422 33 1 4.9164 -1.5320 5.2229 34 1 6.6641 -0.2674 6.3002 35 1 5.7147 1.2484 6.2475 36 1 7.2617 -0.0123 4.1475 37 1 5.6588 -0.1595 2.6350 38 1 5.3238 1.5705 2.9255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084383419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:14 Heat of formation + Delta-G solvation = -40.670923 kcal Electronic energy + Delta-G solvation = -17848.749431 eV Core-core repulsion = 15111.764549 eV Total energy + Delta-G solvation = -2736.984882 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51813 -37.98234 -35.28885 -32.94690 -31.95386 -29.54296 -29.00987 -26.30477 -25.80715 -25.16992 -21.63583 -21.26101 -19.86988 -18.15418 -16.59792 -16.42179 -16.14831 -15.63007 -15.13916 -14.55284 -14.23694 -13.56865 -13.14240 -12.98510 -12.63935 -12.36119 -12.24211 -11.82082 -11.60567 -11.53961 -11.40520 -11.15169 -11.00938 -10.81583 -10.71920 -10.63905 -10.55375 -10.22660 -10.16439 -9.15504 -8.87188 -8.42966 -8.39223 -7.55897 -6.06664 -4.14561 3.25779 3.33498 3.36055 3.44022 3.95491 4.29848 4.40243 4.68968 4.77447 5.00946 5.21597 5.25649 5.34398 5.45130 5.58457 5.63999 5.64271 5.79799 5.86600 5.92162 5.98231 6.08812 6.29110 6.39909 6.52922 6.76806 6.82604 6.90731 7.06931 7.41337 7.45709 7.54239 7.72900 8.02799 8.21155 8.56380 8.85071 9.09810 9.52225 10.98641 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034947 B = 0.005675 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.022430 B = 4933.135185 C = 5190.550366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.596 5.596 13 C 0.087 3.913 14 C 0.501 3.499 15 O -0.550 6.550 16 C -0.131 4.131 17 C -0.088 4.088 18 H 0.086 0.914 19 C -0.152 4.152 20 C 0.048 3.952 21 N -0.689 5.689 22 C 0.058 3.942 23 H 0.011 0.989 24 H 0.093 0.907 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.334 0.666 37 H 0.050 0.950 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -6.206 13.488 15.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.327 5.327 13 C -0.057 4.057 14 C 0.287 3.713 15 O -0.429 6.429 16 C -0.171 4.171 17 C -0.108 4.108 18 H 0.105 0.895 19 C -0.191 4.191 20 C -0.082 4.082 21 N -0.317 5.317 22 C -0.071 4.071 23 H 0.030 0.970 24 H 0.112 0.888 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.068 0.932 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.606 -4.759 13.285 14.845 hybrid contribution 0.001 -1.673 -1.040 1.970 sum 4.607 -6.432 12.245 14.579 Atomic orbital electron populations 1.22092 0.98348 0.99276 1.00814 1.18932 0.90793 0.94567 0.80085 0.91873 1.21355 1.31662 1.12893 0.90334 0.92347 1.24899 0.94981 0.94988 0.98971 1.69889 1.36492 1.22626 1.23616 0.86448 0.78595 0.79574 0.82814 1.19877 1.20947 1.20891 1.48251 1.49138 1.11588 1.23718 1.21538 1.01540 0.83372 0.99222 1.20405 0.79181 0.87241 0.84431 1.90644 1.58195 1.17070 1.76953 1.21736 1.00472 0.99152 0.95743 1.22114 0.96545 0.98293 0.93860 0.89513 1.23224 0.98423 0.99400 0.98051 1.22843 0.94672 0.98778 0.91874 1.61792 1.12041 1.55651 1.02239 1.22681 0.88292 1.02663 0.93474 0.97021 0.88836 0.95174 0.92758 0.93450 0.93036 0.90945 0.89530 0.89741 0.90808 0.91455 0.91860 0.90664 0.85129 0.93179 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.95 37.16 0.33 -3.20 16 2 C 0.26 6.60 2.64 -69.08 -0.18 6.41 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.25 8.37 -34.44 -0.29 -14.54 16 5 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 N -0.60 -12.66 2.75 -175.26 -0.48 -13.14 16 13 C 0.09 1.45 9.48 59.85 0.57 2.02 16 14 C 0.50 10.16 7.46 -10.98 -0.08 10.08 16 15 O -0.55 -13.28 14.18 5.56 0.08 -13.20 16 16 C -0.13 -1.88 3.64 -27.88 -0.10 -1.98 16 17 C -0.09 -1.22 2.55 -88.80 -0.23 -1.45 16 18 H 0.09 1.34 8.04 -51.93 -0.42 0.93 16 19 C -0.15 -1.59 6.52 -24.59 -0.16 -1.75 16 20 C 0.05 0.50 7.57 -2.30 -0.02 0.49 16 21 N -0.69 -8.79 7.39 -110.79 -0.82 -9.61 16 22 C 0.06 0.87 6.17 -2.83 -0.02 0.85 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 25 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 29 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 30 H 0.09 1.07 7.40 -51.93 -0.38 0.68 16 31 H 0.08 1.10 8.03 -51.93 -0.42 0.69 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.33 3.65 8.91 -39.29 -0.35 3.30 16 37 H 0.05 0.77 7.76 -51.93 -0.40 0.37 16 38 H 0.09 1.59 7.68 -51.92 -0.40 1.19 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -30.87 300.20 -7.49 -38.35 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.13 Total: 3.03 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.27 Total: -1.41 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.67 Total: -47.43 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.87 -7.49 -38.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084383419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.318 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds