Wall clock time and date at job start Mon Mar 30 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 C 1.34779 * 119.99763 * 239.99831 * 12 2 1 15 15 O 1.21282 * 120.00170 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00024 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.46917 * 179.97438 * 16 14 12 18 18 H 1.09003 * 110.62717 * 56.65482 * 17 16 14 19 19 C 1.55143 * 110.70352 * 179.97438 * 17 16 14 20 20 C 1.54904 * 101.65198 * 154.03575 * 19 17 16 21 21 N 1.47843 * 104.80117 * 322.93401 * 20 19 17 22 22 C 1.47448 * 108.56456 * 24.08949 * 21 20 19 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 28 28 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 29 29 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 30 30 H 1.09004 * 109.47134 * 299.99971 * 16 14 12 31 31 H 1.09001 * 109.46597 * 60.00090 * 16 14 12 32 32 H 1.09001 * 110.99225 * 272.12867 * 19 17 16 33 33 H 1.09001 * 110.99203 * 35.95162 * 19 17 16 34 34 H 1.09003 * 110.38027 * 204.10085 * 20 19 17 35 35 H 1.09004 * 110.46726 * 81.81265 * 20 19 17 36 36 H 1.00898 * 110.99792 * 261.83102 * 21 20 19 37 37 H 1.08997 * 109.89519 * 239.60667 * 22 21 20 38 38 H 1.09009 * 109.88591 * 118.41300 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2953 -0.7459 3.3140 17 6 4.1459 0.2155 4.1464 18 1 3.5758 1.1083 4.4034 19 6 4.6777 -0.4875 5.4230 20 6 5.9612 0.3282 5.7177 21 7 6.5268 0.6363 4.3869 22 6 5.4387 0.5924 3.3928 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7093 1.1618 -3.4844 27 1 2.4157 -2.7377 0.9716 28 1 1.6239 -2.2853 2.5002 29 1 0.6905 -2.3003 0.9847 30 1 2.4472 -1.0881 3.9073 31 1 3.9006 -1.6025 3.0176 32 1 3.9638 -0.4016 6.2422 33 1 4.9164 -1.5320 5.2229 34 1 6.6641 -0.2674 6.3002 35 1 5.7147 1.2484 6.2475 36 1 7.2617 -0.0123 4.1475 37 1 5.6588 -0.1595 2.6350 38 1 5.3238 1.5705 2.9255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084383419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:14 Heat of formation + Delta-G solvation = -62.820386 kcal Electronic energy + Delta-G solvation = -17849.709904 eV Core-core repulsion = 15111.764549 eV Total energy + Delta-G solvation = -2737.945354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97540 -39.19292 -37.07011 -34.83675 -33.25332 -31.28092 -30.05497 -27.66502 -27.37440 -27.04864 -23.15220 -22.38436 -21.14035 -19.73048 -18.50318 -17.85711 -17.41674 -17.00706 -16.76561 -16.03887 -15.91342 -14.77070 -14.54663 -14.42339 -14.22684 -13.72028 -13.48517 -13.34480 -13.15354 -13.00448 -12.89545 -12.69866 -12.59620 -12.35648 -12.19159 -12.12642 -11.98064 -11.80829 -11.58793 -11.16660 -10.62673 -10.42952 -9.41116 -9.29027 -8.15333 -6.32140 1.39278 1.41053 1.52232 1.87459 2.33299 2.51992 3.12391 3.31843 3.59834 3.75928 3.99273 4.03875 4.38544 4.42020 4.48225 4.56647 4.62806 4.70870 4.77358 4.80745 4.87540 4.90290 4.99985 5.04274 5.07029 5.08892 5.28820 5.40857 5.46651 5.63426 5.68454 5.90938 6.04824 6.16472 6.52881 6.76742 6.88899 7.33627 7.53664 8.89068 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034947 B = 0.005675 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.022430 B = 4933.135185 C = 5190.550366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.006 0.994 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.605 5.605 13 C 0.083 3.917 14 C 0.487 3.513 15 O -0.602 6.602 16 C -0.114 4.114 17 C -0.090 4.090 18 H 0.062 0.938 19 C -0.136 4.136 20 C 0.045 3.955 21 N -0.700 5.700 22 C 0.061 3.939 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.264 0.736 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.346 0.654 37 H 0.043 0.957 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 -9.180 15.149 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.157 3.843 3 H 0.024 0.976 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.336 5.336 13 C -0.059 4.059 14 C 0.277 3.723 15 O -0.484 6.484 16 C -0.154 4.154 17 C -0.110 4.110 18 H 0.081 0.919 19 C -0.175 4.175 20 C -0.084 4.084 21 N -0.330 5.330 22 C -0.068 4.068 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.162 0.838 37 H 0.062 0.938 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.103 -7.778 14.979 17.633 hybrid contribution -0.121 -0.678 -1.530 1.678 sum 4.983 -8.456 13.449 16.650 Atomic orbital electron populations 1.21870 0.97269 1.00090 0.99838 1.18505 0.91575 0.92166 0.82062 0.97615 1.21607 1.31715 1.12914 0.91215 0.92250 1.25760 0.95117 0.95658 1.02103 1.70035 1.37472 1.23957 1.24326 0.85400 0.78230 0.78460 0.78872 1.18878 1.19900 1.21215 1.48283 1.49342 1.13449 1.22510 1.21810 1.01347 0.80365 1.02406 1.21556 0.78135 0.86914 0.85691 1.90627 1.59789 1.19706 1.78259 1.21729 1.01834 0.98983 0.92837 1.22088 0.95444 0.97962 0.95546 0.91946 1.23172 0.98230 0.99816 0.96243 1.22950 0.95548 0.99195 0.90675 1.61644 1.11755 1.56746 1.02809 1.22451 0.90255 0.99920 0.94170 0.96185 0.91577 0.93272 0.92686 0.92823 0.88361 0.91374 0.86097 0.87276 0.88857 0.89405 0.88946 0.91296 0.83796 0.93833 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.95 71.98 0.64 -5.83 16 2 C 0.26 13.74 2.64 44.25 0.12 13.85 16 3 H 0.01 0.37 6.90 -2.39 -0.02 0.36 16 4 C -0.54 -29.56 8.37 25.60 0.21 -29.34 16 5 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -53.86 11.32 21.45 0.24 -53.61 16 8 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 12 N -0.61 -25.50 2.75 -826.79 -2.28 -27.78 16 13 C 0.08 2.52 9.48 127.77 1.21 3.73 16 14 C 0.49 19.82 7.46 87.66 0.65 20.48 16 15 O -0.60 -30.68 14.18 -3.04 -0.04 -30.72 16 16 C -0.11 -2.97 3.64 29.85 0.11 -2.87 16 17 C -0.09 -2.38 2.55 -9.61 -0.02 -2.41 16 18 H 0.06 1.95 8.04 -2.39 -0.02 1.93 16 19 C -0.14 -2.31 6.52 31.98 0.21 -2.10 16 20 C 0.05 0.82 7.57 86.77 0.66 1.48 16 21 N -0.70 -17.08 7.39 -504.42 -3.73 -20.81 16 22 C 0.06 1.88 6.17 86.64 0.53 2.42 16 23 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 25 H 0.05 2.16 6.66 -2.39 -0.02 2.14 16 26 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 2.05 6.44 -2.39 -0.02 2.04 16 29 H 0.07 2.13 6.43 -2.39 -0.02 2.11 16 30 H 0.12 2.38 7.40 -2.39 -0.02 2.36 16 31 H 0.11 2.38 8.03 -2.39 -0.02 2.37 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.35 6.96 8.91 -89.70 -0.80 6.16 16 37 H 0.04 1.35 7.76 -2.39 -0.02 1.33 16 38 H 0.04 1.64 7.68 -2.38 -0.02 1.62 16 Total: -1.00 -71.76 300.20 1.24 -70.52 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.24 Total: 16.25 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 4.77 Total: 0.59 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -5.76 Total: -102.20 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.04 Total: -30.72 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -71.76 1.24 -70.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084383419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.699 kcal (2) G-P(sol) polarization free energy of solvation -71.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds