Wall clock time and date at job start Mon Mar 30 2020 03:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46877 * 2 1 4 4 C 1.46500 * 119.99932 * 95.43758 * 3 2 1 5 5 C 1.50702 * 109.46922 * 275.61161 * 4 3 2 6 6 H 1.07995 * 120.00219 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99925 * 180.27253 * 5 4 3 8 8 N 1.31515 * 120.00022 * 359.72794 * 7 5 4 9 9 Si 1.86795 * 120.00127 * 179.72137 * 7 5 4 10 10 H 1.48509 * 109.47081 * 60.00279 * 9 7 5 11 11 H 1.48503 * 109.47189 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47500 * 300.00551 * 9 7 5 13 13 C 1.34775 * 120.00136 * 275.43665 * 3 2 1 14 14 O 1.21279 * 119.99924 * 3.71908 * 13 3 2 15 15 C 1.50701 * 119.99838 * 183.71616 * 13 3 2 16 16 H 1.09000 * 110.43453 * 310.34625 * 15 13 3 17 17 C 1.54888 * 110.48515 * 73.03116 * 15 13 3 18 18 C 1.54896 * 102.74833 * 156.62085 * 17 15 13 19 19 C 1.54269 * 104.19430 * 322.05406 * 18 17 15 20 20 H 1.09001 * 110.03205 * 142.89251 * 19 18 17 21 21 N 1.46894 * 110.07386 * 264.30454 * 19 18 17 22 22 C 1.53879 * 106.59896 * 23.61183 * 19 18 17 23 23 H 1.09001 * 109.46734 * 183.33072 * 1 2 3 24 24 H 1.08999 * 109.46773 * 303.32475 * 1 2 3 25 25 H 1.08998 * 109.47405 * 63.32852 * 1 2 3 26 26 H 1.08994 * 109.46899 * 240.00618 * 2 1 3 27 27 H 1.09004 * 109.47520 * 119.99975 * 2 1 3 28 28 H 1.08996 * 109.47122 * 155.61191 * 4 3 2 29 29 H 1.09001 * 109.47171 * 35.60484 * 4 3 2 30 30 H 0.97002 * 120.00199 * 179.97438 * 8 7 5 31 31 H 1.09001 * 110.75278 * 274.93231 * 17 15 13 32 32 H 1.08993 * 110.75863 * 38.30492 * 17 15 13 33 33 H 1.08996 * 110.48735 * 203.38179 * 18 17 15 34 34 H 1.08998 * 110.59829 * 80.78845 * 18 17 15 35 35 H 1.00899 * 110.99984 * 297.19362 * 21 19 18 36 36 H 1.00901 * 111.00087 * 61.14853 * 21 19 18 37 37 H 1.08999 * 110.03457 * 240.71738 * 22 19 18 38 38 H 1.08998 * 110.03033 * 119.28109 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3758 2.0318 1.2630 5 6 1.1373 2.6084 1.8992 6 1 0.1796 2.5006 1.4118 7 6 1.2275 3.2779 3.1012 8 7 2.3936 3.4087 3.6951 9 14 -0.3064 3.9993 3.8859 10 1 -1.2835 2.9133 4.1528 11 1 0.0569 4.6639 5.1633 12 1 -0.9121 4.9948 2.9653 13 6 2.1387 2.0535 -1.1619 14 8 1.7795 1.5393 -2.1999 15 6 2.7194 3.4441 -1.1712 16 1 2.2327 4.0648 -0.4189 17 6 4.2487 3.3944 -0.9305 18 6 4.7368 4.7238 -1.5580 19 6 3.8597 4.8930 -2.8158 20 1 3.6127 5.9448 -2.9600 21 7 4.5653 4.3757 -3.9957 22 6 2.5770 4.0793 -2.5699 23 1 -0.3633 -1.0260 0.0597 24 1 -0.3633 0.5646 0.8587 25 1 -0.3634 0.4613 -0.9183 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.0910 2.8313 1.0702 29 1 2.8222 1.2992 1.9355 30 1 2.4572 3.8801 4.5405 31 1 4.4710 3.3662 0.1362 32 1 4.6926 2.5402 -1.4415 33 1 5.7889 4.6520 -1.8335 34 1 4.5796 5.5536 -0.8689 35 1 5.4098 4.8994 -4.1705 36 1 4.7643 3.3916 -3.8955 37 1 2.4785 3.3000 -3.3256 38 1 1.7076 4.7362 -2.5948 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085011231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:49 Heat of formation + Delta-G solvation = -55.626816 kcal Electronic energy + Delta-G solvation = -18237.931992 eV Core-core repulsion = 15500.298574 eV Total energy + Delta-G solvation = -2737.633418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.67636 -37.44875 -35.15889 -32.77385 -32.32397 -30.21731 -28.48902 -27.13393 -26.48877 -23.16425 -22.74971 -20.66528 -19.75046 -18.01694 -16.65563 -16.61723 -15.98422 -15.37911 -14.67266 -14.62693 -14.17273 -13.89181 -13.33834 -13.08495 -12.74465 -12.27338 -12.00802 -11.82702 -11.57163 -11.37054 -11.24197 -11.06359 -10.98401 -10.80502 -10.59018 -10.50606 -10.41112 -10.25685 -9.97986 -9.62294 -8.91443 -8.57958 -8.52273 -7.68550 -6.19042 -4.25518 3.23105 3.28088 3.30198 3.44428 3.98063 4.32689 4.68100 4.85885 4.93418 5.13882 5.25673 5.51216 5.70777 5.73908 5.77023 5.85542 5.94024 5.94898 6.00385 6.06056 6.20879 6.28185 6.31887 6.42241 6.56189 6.58493 6.74676 6.82387 6.93140 7.21504 7.30136 7.54512 7.60341 7.76548 8.06412 8.40176 8.79750 9.07087 9.42145 10.87586 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.008328 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.301458 B = 3361.201823 C = 4127.635483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 N -0.595 5.595 4 C 0.231 3.769 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.522 3.478 14 O -0.574 6.574 15 C -0.110 4.110 16 H 0.109 0.891 17 C -0.110 4.110 18 C -0.157 4.157 19 C 0.087 3.913 20 H 0.079 0.921 21 N -0.842 5.842 22 C -0.108 4.108 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.334 0.666 36 H 0.341 0.659 37 H 0.092 0.908 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 0.572 -7.050 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.001 4.001 3 N -0.325 5.325 4 C 0.111 3.889 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.310 3.690 14 O -0.456 6.456 15 C -0.131 4.131 16 H 0.127 0.873 17 C -0.148 4.148 18 C -0.196 4.196 19 C -0.025 4.025 20 H 0.097 0.903 21 N -0.371 5.371 22 C -0.146 4.146 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.110 0.890 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.320 0.578 -7.795 8.492 hybrid contribution -0.102 0.266 1.542 1.569 sum 3.218 0.844 -6.252 7.082 Atomic orbital electron populations 1.22131 0.96575 1.00797 1.02836 1.21166 0.94458 0.83453 1.01044 1.48236 1.62874 1.13116 1.08267 1.19593 0.96546 0.93471 0.79260 1.21514 0.94503 1.35682 1.05761 0.91983 1.24934 0.96209 0.95880 0.96796 1.69907 1.23469 1.42125 1.17601 0.86605 0.83137 0.79451 0.78585 1.20142 1.21154 1.20109 1.20343 0.78069 0.87471 0.83091 1.90561 1.52179 1.70136 1.32677 1.22082 0.96878 0.94855 0.99310 0.87315 1.22465 0.93466 0.96930 1.01912 1.23204 0.98891 0.98616 0.98901 1.22081 0.93891 0.98845 0.87642 0.90314 1.58998 1.29410 1.08181 1.40505 1.22148 0.96292 0.99624 0.96533 0.93184 0.91185 0.92922 0.91989 0.91155 0.93382 0.95103 0.92525 0.89845 0.92002 0.92074 0.90876 0.85378 0.84609 0.89006 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.20 37.16 0.38 -2.65 16 2 C 0.12 2.32 6.08 -4.04 -0.02 2.30 16 3 N -0.59 -12.59 2.47 -175.06 -0.43 -13.02 16 4 C 0.23 5.39 4.92 -5.19 -0.03 5.37 16 5 C -0.54 -13.77 9.05 -34.44 -0.31 -14.08 16 6 H 0.06 1.63 6.76 -52.49 -0.35 1.27 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -24.21 13.29 55.43 0.74 -23.48 16 9 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.52 10.92 6.92 -10.99 -0.08 10.84 16 14 O -0.57 -13.03 15.11 5.56 0.08 -12.94 16 15 C -0.11 -2.00 2.26 -90.11 -0.20 -2.20 16 16 H 0.11 2.16 7.56 -51.93 -0.39 1.77 16 17 C -0.11 -1.74 5.85 -24.74 -0.14 -1.89 16 18 C -0.16 -2.06 6.52 -25.07 -0.16 -2.23 16 19 C 0.09 1.17 4.03 -66.59 -0.27 0.90 16 20 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 21 N -0.84 -10.30 9.12 -3.72 -0.03 -10.33 16 22 C -0.11 -1.76 5.98 -25.61 -0.15 -1.91 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.07 1.40 6.72 -51.93 -0.35 1.06 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.14 7.65 -51.93 -0.40 0.74 16 27 H 0.07 1.26 7.89 -51.93 -0.41 0.85 16 28 H 0.05 1.13 4.36 -51.93 -0.23 0.90 16 29 H 0.03 0.76 7.95 -51.93 -0.41 0.35 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.08 1.43 6.39 -51.93 -0.33 1.10 16 32 H 0.06 0.96 8.05 -51.93 -0.42 0.55 16 33 H 0.06 0.70 8.03 -51.93 -0.42 0.29 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.33 3.32 9.06 -39.29 -0.36 2.97 16 36 H 0.34 4.23 8.97 -39.29 -0.35 3.87 16 37 H 0.09 1.67 6.53 -51.93 -0.34 1.33 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -28.10 303.05 -7.19 -35.29 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.01 Total: 8.41 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.09 Total: -3.95 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.27 Total: -46.82 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.10 -7.19 -35.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085011231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.334 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds