Wall clock time and date at job start Mon Mar 30 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.47029 * 2 1 4 4 C 1.50695 * 109.46817 * 240.00438 * 2 1 3 5 5 H 1.08001 * 119.99949 * 239.99293 * 4 2 1 6 6 C 1.37879 * 120.00732 * 59.99852 * 4 2 1 7 7 N 1.31519 * 119.99650 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00469 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47022 * 60.00026 * 8 6 4 10 10 H 1.48499 * 109.46909 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47004 * 300.00172 * 8 6 4 12 12 N 1.46494 * 109.47216 * 120.00371 * 2 1 3 13 13 C 1.46500 * 120.00438 * 59.99797 * 12 2 1 14 14 C 1.34783 * 119.99949 * 240.00310 * 12 2 1 15 15 O 1.21287 * 119.99688 * 359.97438 * 14 12 2 16 16 C 1.50694 * 119.99892 * 179.97438 * 14 12 2 17 17 H 1.09004 * 110.81757 * 56.66667 * 16 14 12 18 18 C 1.54882 * 110.75918 * 293.32599 * 16 14 12 19 19 C 1.54268 * 104.19992 * 203.74378 * 18 16 14 20 20 C 1.53876 * 106.59607 * 23.60931 * 19 18 16 21 21 H 1.08998 * 110.03805 * 240.71854 * 20 19 18 22 22 N 1.46903 * 110.07644 * 119.30667 * 20 19 18 23 23 C 1.54268 * 106.59992 * 0.02562 * 20 19 18 24 24 H 1.08997 * 109.47154 * 60.00047 * 1 2 3 25 25 H 1.08995 * 109.46729 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46961 * 299.99806 * 1 2 3 27 27 H 0.96990 * 120.00497 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47299 * 270.00618 * 13 12 2 29 29 H 1.09006 * 109.46831 * 30.00246 * 13 12 2 30 30 H 1.08997 * 109.47500 * 149.99825 * 13 12 2 31 31 H 1.09003 * 110.48391 * 322.42126 * 18 16 14 32 32 H 1.09004 * 110.48801 * 85.06667 * 18 16 14 33 33 H 1.08994 * 110.03288 * 264.32894 * 19 18 16 34 34 H 1.09000 * 110.07311 * 142.91218 * 19 18 16 35 35 H 1.00902 * 110.99934 * 62.80780 * 22 20 19 36 36 H 1.00898 * 111.00368 * 186.76268 * 22 20 19 37 37 H 1.08999 * 110.49069 * 217.71506 * 23 20 19 38 38 H 1.08996 * 110.48777 * 95.06810 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8280 -2.5197 -4.0083 10 1 1.8268 -0.4197 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0866 1.1254 1.8912 16 6 3.2951 -0.7459 3.3140 17 1 3.8552 -1.6411 3.0433 18 6 2.1216 -1.0983 4.2614 19 6 2.7816 -1.2267 5.6498 20 6 4.0783 -0.3998 5.5982 21 1 4.9390 -1.0431 5.7814 22 7 4.0315 0.6745 6.5990 23 6 4.1607 0.2027 4.1805 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7087 1.1614 -3.4843 28 1 0.7377 -2.1445 1.9992 29 1 1.5296 -2.5969 0.4707 30 1 2.4630 -2.5820 1.9862 31 1 1.3803 -0.2992 4.2639 32 1 1.6645 -2.0432 3.9675 33 1 3.0130 -2.2713 5.8580 34 1 2.1171 -0.8313 6.4180 35 1 3.9772 0.2965 7.5330 36 1 4.8240 1.2918 6.5043 37 1 5.1918 0.2070 3.8270 38 1 3.7487 1.2118 4.1703 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085013008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:40 Heat of formation + Delta-G solvation = -47.429335 kcal Electronic energy + Delta-G solvation = -17998.105815 eV Core-core repulsion = 15260.827867 eV Total energy + Delta-G solvation = -2737.277948 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63364 -37.43172 -35.22595 -33.14378 -32.36015 -29.52567 -28.63436 -26.49035 -26.02239 -25.17171 -22.25757 -20.32458 -19.71814 -18.11726 -16.82959 -16.34464 -15.60362 -15.43419 -15.32677 -14.79570 -14.34578 -13.82839 -13.30843 -12.94295 -12.51946 -12.28280 -11.92419 -11.68905 -11.46623 -11.26679 -11.09165 -11.05300 -10.94585 -10.82945 -10.75997 -10.61262 -10.44007 -10.21333 -10.13000 -9.14574 -8.78498 -8.76177 -8.38518 -7.51068 -6.03998 -4.12069 3.29280 3.34439 3.35696 3.47954 4.00032 4.40787 4.46329 4.64134 4.69970 5.05600 5.26623 5.34378 5.46524 5.53672 5.55562 5.69779 5.78588 5.91360 5.97249 6.02291 6.10021 6.19738 6.30654 6.43493 6.53402 6.80510 6.89037 7.11899 7.13337 7.34637 7.49829 7.59119 7.76016 8.06597 8.24741 8.61336 8.87327 9.15270 9.54409 11.01242 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044184 B = 0.005605 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.555100 B = 4994.366083 C = 5042.780421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.592 5.592 13 C 0.085 3.915 14 C 0.511 3.489 15 O -0.553 6.553 16 C -0.112 4.112 17 H 0.093 0.907 18 C -0.108 4.108 19 C -0.117 4.117 20 C 0.084 3.916 21 H 0.035 0.965 22 N -0.844 5.844 23 C -0.100 4.100 24 H 0.092 0.908 25 H 0.028 0.972 26 H 0.010 0.990 27 H 0.263 0.737 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.336 0.664 36 H 0.341 0.659 37 H 0.063 0.937 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 -6.526 14.620 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.323 5.323 13 C -0.059 4.059 14 C 0.297 3.703 15 O -0.432 6.432 16 C -0.134 4.134 17 H 0.112 0.888 18 C -0.146 4.146 19 C -0.155 4.155 20 C -0.027 4.027 21 H 0.053 0.947 22 N -0.374 5.374 23 C -0.138 4.138 24 H 0.111 0.889 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.082 0.918 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.749 -5.588 13.982 15.306 hybrid contribution 1.204 -1.065 -0.573 1.707 sum 3.953 -6.653 13.410 15.482 Atomic orbital electron populations 1.22070 0.98264 0.99309 1.00720 1.18914 0.90846 0.94531 0.80042 0.91991 1.21290 1.31787 1.12976 0.90379 0.92371 1.24896 0.94970 0.94995 0.98930 1.69873 1.36313 1.22599 1.23809 0.86557 0.79209 0.79551 0.82057 1.20266 1.21176 1.20290 1.48192 1.49080 1.11529 1.23486 1.21637 0.98689 0.83488 1.02111 1.20231 0.79066 0.87010 0.83945 1.90634 1.58555 1.17245 1.76782 1.22223 0.97783 0.99345 0.94062 0.88848 1.22313 0.96947 1.02020 0.93311 1.22192 0.96478 0.98795 0.98018 1.22026 0.96442 0.91594 0.92644 0.94705 1.58848 1.50359 1.21316 1.06838 1.22273 0.99445 1.00560 0.91536 0.88936 0.95236 0.97054 0.92661 0.93927 0.90357 0.92824 0.91001 0.90921 0.91978 0.90828 0.85154 0.84667 0.91845 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.97 37.16 0.33 -3.22 16 2 C 0.26 6.72 2.64 -69.08 -0.18 6.53 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.40 7.99 -34.44 -0.28 -14.67 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 N -0.59 -12.88 2.75 -175.26 -0.48 -13.37 16 13 C 0.08 1.44 8.03 59.85 0.48 1.92 16 14 C 0.51 10.86 7.04 -10.99 -0.08 10.79 16 15 O -0.55 -14.10 15.05 5.55 0.08 -14.02 16 16 C -0.11 -1.74 2.31 -89.77 -0.21 -1.95 16 17 H 0.09 1.29 7.27 -51.93 -0.38 0.92 16 18 C -0.11 -1.42 5.60 -25.07 -0.14 -1.56 16 19 C -0.12 -1.27 6.59 -25.61 -0.17 -1.44 16 20 C 0.08 0.95 4.03 -66.59 -0.27 0.68 16 21 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 22 N -0.84 -8.67 9.10 -3.71 -0.03 -8.71 16 23 C -0.10 -1.46 5.56 -25.05 -0.14 -1.59 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 25 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.04 0.65 7.71 -51.93 -0.40 0.25 16 29 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 30 H 0.05 0.75 6.06 -51.93 -0.31 0.43 16 31 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 32 H 0.07 0.84 6.58 -51.93 -0.34 0.50 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 35 H 0.34 2.71 9.07 -39.29 -0.36 2.36 16 36 H 0.34 3.16 9.01 -39.29 -0.35 2.80 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.59 7.35 -51.93 -0.38 1.20 16 LS Contribution 298.01 15.07 4.49 4.49 Total: -1.00 -31.51 298.01 -7.08 -38.59 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.00 Total: 4.48 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.74 Total: -2.82 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.11 Total: -46.91 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.08 Total: -14.02 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.51 -7.08 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085013008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.840 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds