Wall clock time and date at job start Mon Mar 30 2020 03:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47138 * 2 1 4 4 C 1.50699 * 109.46997 * 239.99772 * 2 1 3 5 5 H 1.08002 * 120.00319 * 240.00299 * 4 2 1 6 6 C 1.37878 * 119.99930 * 60.00136 * 4 2 1 7 7 N 1.31516 * 120.00065 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99934 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47001 * 120.00145 * 8 6 4 11 11 H 1.48498 * 109.47089 * 239.99650 * 8 6 4 12 12 N 1.46497 * 109.46818 * 120.00019 * 2 1 3 13 13 C 1.46502 * 120.00214 * 60.00181 * 12 2 1 14 14 C 1.34781 * 120.00120 * 239.99299 * 12 2 1 15 15 O 1.21281 * 119.99490 * 4.57590 * 14 12 2 16 16 C 1.50695 * 120.00341 * 184.57057 * 14 12 2 17 17 H 1.09004 * 110.66789 * 327.99305 * 16 14 12 18 18 C 1.54965 * 110.92468 * 91.30093 * 16 14 12 19 19 C 1.54264 * 104.15937 * 156.29845 * 18 16 14 20 20 C 1.53876 * 106.63988 * 336.44482 * 19 18 16 21 21 H 1.09001 * 110.03418 * 240.69214 * 20 19 18 22 22 N 1.46897 * 110.03349 * 119.31195 * 20 19 18 23 23 C 1.54267 * 106.60178 * 359.97438 * 20 19 18 24 24 H 1.08998 * 109.47499 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46912 * 300.00383 * 1 2 3 26 26 H 1.08994 * 109.46935 * 59.99826 * 1 2 3 27 27 H 0.96996 * 120.00534 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.46622 * 274.11537 * 13 12 2 29 29 H 1.08998 * 109.47227 * 34.11374 * 13 12 2 30 30 H 1.08993 * 109.47313 * 154.11973 * 13 12 2 31 31 H 1.08999 * 110.47301 * 37.64413 * 18 16 14 32 32 H 1.09000 * 110.52516 * 274.97724 * 18 16 14 33 33 H 1.09001 * 110.03028 * 217.14233 * 19 18 16 34 34 H 1.08997 * 110.03492 * 95.75785 * 19 18 16 35 35 H 1.00905 * 110.99993 * 61.45015 * 22 20 19 36 36 H 1.00895 * 111.00263 * 185.40716 * 22 20 19 37 37 H 1.08996 * 110.48874 * 142.28765 * 23 20 19 38 38 H 1.08998 * 110.48577 * 264.93759 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1453 -2.2878 -3.6038 10 1 1.1659 -1.5867 -4.8160 11 1 3.1465 -0.1876 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0181 1.1468 1.9351 16 6 3.3802 -0.7726 3.2595 17 1 2.7127 -1.5702 3.5858 18 6 4.7818 -1.3370 2.9154 19 6 5.4735 -1.4908 4.2858 20 6 4.7733 -0.5123 5.2450 21 1 5.4904 0.2149 5.6257 22 7 4.1649 -1.2498 6.3603 23 6 3.6803 0.2031 4.4244 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7089 1.1614 -3.4843 28 1 0.7009 -2.1457 1.9352 29 1 1.6011 -2.6146 0.4729 30 1 2.4276 -2.5627 2.0485 31 1 5.3314 -0.6361 2.2872 32 1 4.6935 -2.3049 2.4220 33 1 6.5304 -1.2383 4.2009 34 1 5.3619 -2.5128 4.6478 35 1 4.8661 -1.7415 6.8939 36 1 3.6274 -0.6332 6.9510 37 1 2.7882 0.3587 5.0311 38 1 4.0520 1.1530 4.0403 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085013014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:42 Heat of formation + Delta-G solvation = -47.216169 kcal Electronic energy + Delta-G solvation = -18001.432957 eV Core-core repulsion = 15264.164252 eV Total energy + Delta-G solvation = -2737.268705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.59474 -37.46196 -35.19791 -32.99589 -32.34657 -29.60515 -28.55986 -26.63162 -25.94979 -25.18112 -22.29911 -20.20000 -19.70596 -18.10183 -16.92242 -16.27163 -15.61616 -15.44383 -15.20885 -14.74589 -14.24072 -13.85771 -13.39050 -12.97250 -12.42181 -12.24224 -11.91280 -11.57911 -11.48238 -11.42798 -11.08595 -11.02962 -10.92604 -10.81135 -10.77623 -10.53640 -10.41810 -10.19821 -10.12923 -9.12633 -8.82339 -8.71565 -8.38881 -7.49280 -6.04237 -4.12084 3.27366 3.34943 3.37701 3.45524 4.05361 4.41819 4.44295 4.66058 4.74292 5.08990 5.26712 5.46129 5.49669 5.55101 5.60385 5.77797 5.82909 5.93517 5.96596 6.07274 6.13706 6.23132 6.32127 6.44082 6.51608 6.81201 6.90097 7.09901 7.13047 7.31924 7.50915 7.59818 7.76548 8.07278 8.24766 8.62782 8.87846 9.16090 9.54610 11.01074 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038267 B = 0.005949 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.531616 B = 4705.363527 C = 4943.465511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.510 3.490 15 O -0.557 6.557 16 C -0.108 4.108 17 H 0.095 0.905 18 C -0.105 4.105 19 C -0.115 4.115 20 C 0.085 3.915 21 H 0.036 0.964 22 N -0.844 5.844 23 C -0.100 4.100 24 H 0.029 0.971 25 H 0.010 0.990 26 H 0.092 0.908 27 H 0.262 0.738 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.337 0.663 36 H 0.339 0.661 37 H 0.067 0.933 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.300 -6.109 13.853 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.323 5.323 13 C -0.061 4.061 14 C 0.297 3.703 15 O -0.437 6.437 16 C -0.130 4.130 17 H 0.113 0.887 18 C -0.143 4.143 19 C -0.153 4.153 20 C -0.026 4.026 21 H 0.054 0.946 22 N -0.374 5.374 23 C -0.139 4.139 24 H 0.048 0.952 25 H 0.029 0.971 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.086 0.914 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.927 -5.777 13.025 15.076 hybrid contribution 0.771 0.007 -0.295 0.826 sum 5.698 -5.770 12.730 15.093 Atomic orbital electron populations 1.22064 0.98310 0.99317 1.00693 1.18920 0.90909 0.94495 0.80076 0.92033 1.21371 1.31622 1.12919 0.90322 0.92211 1.24902 0.94996 0.94996 0.98956 1.69896 1.36495 1.22658 1.23574 0.86448 0.78582 0.79581 0.82820 1.19825 1.20959 1.20946 1.48217 1.48945 1.11634 1.23525 1.21623 0.98883 0.83515 1.02111 1.20343 0.79020 0.87348 0.83593 1.90610 1.61132 1.15868 1.76051 1.22229 0.97748 0.98694 0.94303 0.88716 1.22223 0.94107 1.01207 0.96788 1.22203 0.98596 0.99779 0.94767 1.21992 0.94930 0.93939 0.91778 0.94590 1.58861 1.29908 1.33950 1.14700 1.22309 0.98013 0.98481 0.95071 0.95220 0.97076 0.88953 0.92789 0.93948 0.90453 0.92422 0.91007 0.91103 0.91920 0.90839 0.85098 0.84812 0.91412 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.97 37.16 0.33 -3.26 16 2 C 0.26 6.73 2.63 -69.08 -0.18 6.55 16 3 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 4 C -0.52 -14.35 8.02 -34.44 -0.28 -14.62 16 5 H 0.06 1.61 7.27 -52.49 -0.38 1.23 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.59 -13.07 2.75 -175.26 -0.48 -13.56 16 13 C 0.08 1.45 9.12 59.85 0.55 2.00 16 14 C 0.51 10.90 6.86 -10.99 -0.08 10.82 16 15 O -0.56 -14.08 15.17 5.56 0.08 -13.99 16 16 C -0.11 -1.72 2.30 -89.74 -0.21 -1.93 16 17 H 0.09 1.40 6.54 -51.93 -0.34 1.06 16 18 C -0.11 -1.49 6.20 -25.03 -0.16 -1.64 16 19 C -0.12 -1.31 6.58 -25.61 -0.17 -1.47 16 20 C 0.08 0.96 4.03 -66.60 -0.27 0.69 16 21 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 22 N -0.84 -8.01 9.12 -3.72 -0.03 -8.05 16 23 C -0.10 -1.44 5.82 -25.07 -0.15 -1.59 16 24 H 0.03 0.67 7.67 -51.93 -0.40 0.28 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.43 6.97 -51.93 -0.36 1.07 16 30 H 0.06 0.84 5.79 -51.93 -0.30 0.54 16 31 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 32 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.78 7.92 -51.93 -0.41 0.36 16 35 H 0.34 2.55 9.06 -39.29 -0.36 2.20 16 36 H 0.34 2.84 8.92 -39.29 -0.35 2.49 16 37 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 38 H 0.08 1.37 7.24 -51.93 -0.38 1.00 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -31.26 300.15 -7.01 -38.27 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.01 Total: 4.26 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.69 Total: -2.79 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.11 Total: -46.46 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.26 -7.01 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085013014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.947 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds