Wall clock time and date at job start Mon Mar 30 2020 03:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47138 * 2 1 4 4 C 1.50699 * 109.46997 * 239.99772 * 2 1 3 5 5 H 1.08002 * 120.00319 * 240.00299 * 4 2 1 6 6 C 1.37878 * 119.99930 * 60.00136 * 4 2 1 7 7 N 1.31516 * 120.00065 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99934 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47001 * 120.00145 * 8 6 4 11 11 H 1.48498 * 109.47089 * 239.99650 * 8 6 4 12 12 N 1.46497 * 109.46818 * 120.00019 * 2 1 3 13 13 C 1.46502 * 120.00214 * 60.00181 * 12 2 1 14 14 C 1.34781 * 120.00120 * 239.99299 * 12 2 1 15 15 O 1.21281 * 119.99490 * 4.57590 * 14 12 2 16 16 C 1.50695 * 120.00341 * 184.57057 * 14 12 2 17 17 H 1.09004 * 110.66789 * 327.99305 * 16 14 12 18 18 C 1.54965 * 110.92468 * 91.30093 * 16 14 12 19 19 C 1.54264 * 104.15937 * 156.29845 * 18 16 14 20 20 C 1.53876 * 106.63988 * 336.44482 * 19 18 16 21 21 H 1.09001 * 110.03418 * 240.69214 * 20 19 18 22 22 N 1.46897 * 110.03349 * 119.31195 * 20 19 18 23 23 C 1.54267 * 106.60178 * 359.97438 * 20 19 18 24 24 H 1.08998 * 109.47499 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46912 * 300.00383 * 1 2 3 26 26 H 1.08994 * 109.46935 * 59.99826 * 1 2 3 27 27 H 0.96996 * 120.00534 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.46622 * 274.11537 * 13 12 2 29 29 H 1.08998 * 109.47227 * 34.11374 * 13 12 2 30 30 H 1.08993 * 109.47313 * 154.11973 * 13 12 2 31 31 H 1.08999 * 110.47301 * 37.64413 * 18 16 14 32 32 H 1.09000 * 110.52516 * 274.97724 * 18 16 14 33 33 H 1.09001 * 110.03028 * 217.14233 * 19 18 16 34 34 H 1.08997 * 110.03492 * 95.75785 * 19 18 16 35 35 H 1.00905 * 110.99993 * 61.45015 * 22 20 19 36 36 H 1.00895 * 111.00263 * 185.40716 * 22 20 19 37 37 H 1.08996 * 110.48874 * 142.28765 * 23 20 19 38 38 H 1.08998 * 110.48577 * 264.93759 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1453 -2.2878 -3.6038 10 1 1.1659 -1.5867 -4.8160 11 1 3.1465 -0.1876 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0181 1.1468 1.9351 16 6 3.3802 -0.7726 3.2595 17 1 2.7127 -1.5702 3.5858 18 6 4.7818 -1.3370 2.9154 19 6 5.4735 -1.4908 4.2858 20 6 4.7733 -0.5123 5.2450 21 1 5.4904 0.2149 5.6257 22 7 4.1649 -1.2498 6.3603 23 6 3.6803 0.2031 4.4244 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7089 1.1614 -3.4843 28 1 0.7009 -2.1457 1.9352 29 1 1.6011 -2.6146 0.4729 30 1 2.4276 -2.5627 2.0485 31 1 5.3314 -0.6361 2.2872 32 1 4.6935 -2.3049 2.4220 33 1 6.5304 -1.2383 4.2009 34 1 5.3619 -2.5128 4.6478 35 1 4.8661 -1.7415 6.8939 36 1 3.6274 -0.6332 6.9510 37 1 2.7882 0.3587 5.0311 38 1 4.0520 1.1530 4.0403 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085013014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:42 Heat of formation + Delta-G solvation = -69.287708 kcal Electronic energy + Delta-G solvation = -18002.390051 eV Core-core repulsion = 15264.164252 eV Total energy + Delta-G solvation = -2738.225799 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12285 -38.73633 -37.05514 -34.83715 -33.51501 -31.41778 -29.75967 -27.77049 -27.48246 -27.29767 -23.87625 -21.76279 -20.72607 -19.67861 -18.62401 -18.10070 -17.27131 -16.53135 -16.42460 -16.06349 -15.89840 -15.37144 -14.79253 -14.47181 -14.13397 -13.85309 -13.60342 -13.20774 -12.92114 -12.89162 -12.72850 -12.62944 -12.41910 -12.22319 -12.10606 -12.07592 -12.01527 -11.79252 -11.58013 -11.18754 -10.61889 -10.41800 -9.51578 -9.30412 -8.14784 -6.31667 1.40850 1.42136 1.53910 1.80029 2.33537 2.52167 3.12997 3.53174 3.61343 3.67309 3.91648 4.26277 4.42533 4.48596 4.51371 4.55598 4.60359 4.74121 4.76990 4.87536 4.88503 4.95814 5.03165 5.06554 5.11170 5.19348 5.25498 5.35670 5.47397 5.61528 5.67621 6.04777 6.16250 6.34392 6.70800 6.76765 6.86735 7.32704 7.50782 8.90041 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038267 B = 0.005949 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.531616 B = 4705.363527 C = 4943.465511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.259 3.741 3 H 0.005 0.995 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.601 5.601 13 C 0.080 3.920 14 C 0.499 3.501 15 O -0.609 6.609 16 C -0.098 4.098 17 H 0.116 0.884 18 C -0.106 4.106 19 C -0.106 4.106 20 C 0.094 3.906 21 H 0.045 0.955 22 N -0.844 5.844 23 C -0.101 4.101 24 H 0.046 0.954 25 H 0.016 0.984 26 H 0.067 0.933 27 H 0.264 0.736 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.351 0.649 36 H 0.347 0.653 37 H 0.071 0.929 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 -8.763 15.106 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.157 3.843 3 H 0.023 0.977 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.330 5.330 13 C -0.063 4.063 14 C 0.288 3.712 15 O -0.491 6.491 16 C -0.120 4.120 17 H 0.134 0.866 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.018 4.018 21 H 0.063 0.937 22 N -0.377 5.377 23 C -0.140 4.140 24 H 0.065 0.935 25 H 0.035 0.965 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.706 -8.476 14.314 17.586 hybrid contribution 0.508 0.887 -0.658 1.216 sum 6.214 -7.589 13.656 16.813 Atomic orbital electron populations 1.21853 0.97319 1.00029 0.99737 1.18534 0.91633 0.92153 0.82001 0.97666 1.21603 1.31801 1.13021 0.91039 0.91937 1.25778 0.95073 0.95651 1.02134 1.70041 1.37439 1.23994 1.24363 0.85367 0.78210 0.78481 0.78711 1.18730 1.19973 1.21151 1.48255 1.48978 1.13394 1.22399 1.21859 1.01085 0.80758 1.02567 1.21398 0.78129 0.87063 0.84575 1.90580 1.62690 1.18412 1.77460 1.22254 0.98704 0.98903 0.92103 0.86608 1.22257 0.92786 1.00862 0.98479 1.22169 0.98953 1.00726 0.92582 1.21822 0.93781 0.94073 0.92080 0.93690 1.58784 1.30336 1.33869 1.14716 1.22290 0.99341 0.97335 0.95010 0.93450 0.96460 0.91436 0.92661 0.92025 0.91327 0.88971 0.93556 0.89877 0.90564 0.89102 0.83452 0.83997 0.91022 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 8.97 71.98 0.65 -5.95 16 2 C 0.26 14.04 2.63 44.25 0.12 14.15 16 3 H 0.01 0.35 6.91 -2.39 -0.02 0.33 16 4 C -0.54 -29.77 8.02 25.60 0.21 -29.57 16 5 H 0.06 3.35 7.27 -2.91 -0.02 3.33 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -54.10 11.32 21.45 0.24 -53.86 16 8 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 9 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 N -0.60 -26.61 2.75 -826.80 -2.28 -28.89 16 13 C 0.08 2.63 9.12 127.77 1.17 3.80 16 14 C 0.50 21.69 6.86 87.65 0.60 22.29 16 15 O -0.61 -32.43 15.17 -3.03 -0.05 -32.47 16 16 C -0.10 -3.00 2.30 -10.22 -0.02 -3.03 16 17 H 0.12 3.06 6.54 -2.38 -0.02 3.04 16 18 C -0.11 -2.80 6.20 31.69 0.20 -2.60 16 19 C -0.11 -2.06 6.58 31.32 0.21 -1.85 16 20 C 0.09 1.87 4.03 45.64 0.18 2.05 16 21 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 22 N -0.84 -13.06 9.12 -165.68 -1.51 -14.57 16 23 C -0.10 -2.81 5.82 31.67 0.18 -2.63 16 24 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 25 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.07 2.41 6.97 -2.39 -0.02 2.39 16 30 H 0.09 2.39 5.79 -2.39 -0.01 2.38 16 31 H 0.05 1.46 8.05 -2.39 -0.02 1.44 16 32 H 0.08 1.98 7.86 -2.39 -0.02 1.96 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.50 7.92 -2.39 -0.02 1.48 16 35 H 0.35 3.93 9.06 -89.69 -0.81 3.12 16 36 H 0.35 4.72 8.92 -89.70 -0.80 3.92 16 37 H 0.07 1.89 7.94 -2.39 -0.02 1.87 16 38 H 0.06 1.88 7.24 -2.39 -0.02 1.86 16 Total: -1.00 -70.58 300.15 1.82 -68.76 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.55 Total: 17.61 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 3.93 Total: -2.15 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -3.54 Total: -97.32 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.05 Total: -32.47 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.58 1.82 -68.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085013014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.527 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds