Wall clock time and date at job start Mon Mar 30 2020 03:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99793 * 2 1 4 4 C 1.53000 * 109.46769 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99474 * 4 3 2 6 6 C 1.52993 * 109.47345 * 65.00032 * 4 3 2 7 7 C 1.50703 * 109.46801 * 184.99750 * 4 3 2 8 8 O 1.21280 * 120.00262 * 0.02562 * 7 4 3 9 9 N 1.34776 * 119.99815 * 179.97438 * 7 4 3 10 10 C 1.46497 * 119.99939 * 180.02562 * 9 7 4 11 11 C 1.50701 * 109.47589 * 90.00159 * 10 9 7 12 12 H 1.08002 * 119.99536 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00473 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99459 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00198 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47080 * 90.00084 * 15 13 11 17 17 H 1.48496 * 109.47302 * 209.99928 * 15 13 11 18 18 H 1.48499 * 109.47303 * 329.99968 * 15 13 11 19 19 C 1.46500 * 120.00185 * 0.02562 * 9 7 4 20 20 C 1.53000 * 117.49783 * 188.74742 * 19 9 7 21 21 C 1.52996 * 117.49998 * 120.08593 * 19 9 7 22 22 H 1.09002 * 109.46903 * 59.99922 * 1 2 3 23 23 H 1.08998 * 109.46795 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47087 * 299.99901 * 1 2 3 25 25 H 1.00899 * 110.99995 * 236.04398 * 2 1 3 26 26 H 1.09002 * 109.47401 * 59.99808 * 3 2 1 27 27 H 1.09001 * 109.46874 * 299.99821 * 3 2 1 28 28 H 1.09004 * 109.47135 * 179.97438 * 6 4 3 29 29 H 1.09002 * 109.47179 * 299.99584 * 6 4 3 30 30 H 1.08993 * 109.47639 * 59.99724 * 6 4 3 31 31 H 1.09000 * 109.47433 * 210.00029 * 10 9 7 32 32 H 1.09004 * 109.47370 * 329.99721 * 10 9 7 33 33 H 0.97004 * 119.99604 * 179.97438 * 14 13 11 34 34 H 1.09000 * 115.54845 * 334.41378 * 19 9 7 35 35 H 1.08998 * 117.50252 * 0.02562 * 20 19 9 36 36 H 1.09005 * 117.49475 * 145.02239 * 20 19 9 37 37 H 1.09001 * 117.50034 * 214.98247 * 21 19 9 38 38 H 1.09005 * 117.49826 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8727 0.7316 0.8410 6 6 4.0179 0.7078 -1.3082 7 6 4.0648 2.7321 0.1231 8 8 3.3016 3.6711 0.2044 9 7 5.3960 2.9420 0.1446 10 6 5.9209 4.3043 0.2655 11 6 6.0978 4.6472 1.7223 12 1 5.8441 3.9229 2.4821 13 6 6.5824 5.8860 2.0851 14 7 6.8908 6.7682 1.1597 15 14 6.8009 6.3112 3.8908 16 1 8.1661 5.9243 4.3288 17 1 6.6154 7.7722 4.0814 18 1 5.7950 5.5751 4.6980 19 6 6.3181 1.8077 0.0470 20 6 7.8046 2.0835 0.2818 21 6 7.2940 1.7900 -1.1311 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8306 -0.5261 -0.7813 26 1 1.6459 1.8949 0.8900 27 1 1.6459 1.8947 -0.8900 28 1 5.1076 0.6792 -1.3088 29 1 3.6274 -0.3059 -1.3978 30 1 3.6702 1.3068 -2.1498 31 1 6.8831 4.3694 -0.2424 32 1 5.2214 5.0051 -0.1904 33 1 7.2314 7.6399 1.4150 34 1 5.9237 0.8506 0.3884 35 1 8.0965 3.1088 0.5093 36 1 8.3883 1.3076 0.7772 37 1 7.5420 0.8212 -1.5647 38 1 7.2498 2.6221 -1.8339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086067432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:45 Heat of formation + Delta-G solvation = -8.849047 kcal Electronic energy + Delta-G solvation = -17921.300857 eV Core-core repulsion = 15185.695875 eV Total energy + Delta-G solvation = -2735.604982 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.60922 -37.04395 -36.17273 -33.25808 -32.69567 -31.73553 -27.52647 -26.64264 -24.57907 -23.15699 -22.20042 -21.91006 -20.62289 -18.15017 -16.96885 -16.35511 -16.15129 -15.30586 -14.68632 -14.63762 -14.18907 -13.84749 -13.73168 -13.21498 -13.01482 -12.39943 -12.26236 -12.17158 -11.77483 -11.42859 -11.38547 -11.01231 -10.94357 -10.87176 -10.78089 -10.51618 -10.34196 -10.12128 -10.05320 -9.49008 -8.78660 -8.47585 -8.42402 -7.51503 -6.03150 -4.07370 3.31119 3.35814 3.38376 3.43679 3.77058 4.30270 4.40278 4.48196 4.95569 5.04257 5.16336 5.26331 5.30818 5.33772 5.35641 5.41810 5.48776 5.60190 5.79894 5.83124 5.86054 5.99298 6.02742 6.15547 6.21583 6.37241 6.45140 6.75084 6.95139 7.06686 7.33303 7.44570 7.55239 7.93516 8.24569 8.43615 8.91868 9.10521 9.57532 11.04742 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024017 B = 0.006954 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.583352 B = 4025.324894 C = 4747.516722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.697 5.697 3 C 0.078 3.922 4 C -0.110 4.110 5 H 0.099 0.901 6 C -0.155 4.155 7 C 0.515 3.485 8 O -0.541 6.541 9 N -0.569 5.569 10 C 0.244 3.756 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.896 5.896 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.078 3.922 20 C -0.177 4.177 21 C -0.204 4.204 22 H 0.020 0.980 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.337 0.663 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.861 -14.434 -4.881 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.328 5.328 3 C -0.051 4.051 4 C -0.132 4.132 5 H 0.117 0.883 6 C -0.212 4.212 7 C 0.302 3.698 8 O -0.419 6.419 9 N -0.298 5.298 10 C 0.125 3.875 11 C -0.559 4.559 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.029 4.029 20 C -0.214 4.214 21 C -0.243 4.243 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.155 0.845 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.169 -13.771 -4.172 14.981 hybrid contribution 0.078 0.590 0.110 0.605 sum -4.090 -13.182 -4.062 14.387 Atomic orbital electron populations 1.22164 0.87914 1.01439 1.00614 1.60454 1.07680 1.14863 1.49780 1.21740 0.92970 0.88400 1.02027 1.21249 0.96023 0.95508 1.00377 0.88313 1.22025 1.03138 1.00071 0.95965 1.20178 0.82437 0.90200 0.77034 1.90667 1.56562 1.44560 1.50098 1.47707 1.04123 1.08287 1.69693 1.19294 0.94734 0.76159 0.97334 1.21407 1.42923 0.99556 0.92031 0.92422 1.24926 0.95474 0.96007 0.97706 1.69938 1.44430 1.06521 1.32626 0.86507 0.78336 0.77578 0.85089 1.20637 1.21160 1.19899 1.21536 0.87830 0.91269 1.02221 1.23391 0.95621 1.04672 0.97723 1.23435 1.05671 1.02702 0.92510 0.96094 0.91659 0.91621 0.84460 0.90032 0.94558 0.90372 0.92149 0.92651 0.94797 0.93949 0.92767 0.86339 0.86370 0.88934 0.88961 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.70 60.07 0.64 0.94 16 2 N -0.70 -8.40 6.85 -121.13 -0.83 -9.23 16 3 C 0.08 1.17 4.49 -3.82 -0.02 1.15 16 4 C -0.11 -1.69 2.14 -91.77 -0.20 -1.89 16 5 H 0.10 1.46 7.57 -51.93 -0.39 1.06 16 6 C -0.15 -1.89 8.58 37.15 0.32 -1.57 16 7 C 0.52 10.87 7.07 -10.98 -0.08 10.79 16 8 O -0.54 -13.81 15.50 5.56 0.09 -13.72 16 9 N -0.57 -12.11 2.79 -167.47 -0.47 -12.58 16 10 C 0.24 6.36 4.46 -5.19 -0.02 6.34 16 11 C -0.52 -14.72 9.18 -34.44 -0.32 -15.04 16 12 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 15 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 19 C 0.08 1.28 4.33 -67.93 -0.29 0.99 16 20 C -0.18 -2.88 9.72 -26.69 -0.26 -3.14 16 21 C -0.20 -2.95 9.31 -26.69 -0.25 -3.20 16 22 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.34 3.46 7.07 -39.29 -0.28 3.18 16 26 H 0.08 1.39 7.95 -51.93 -0.41 0.98 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.94 4.42 -51.93 -0.23 0.71 16 29 H 0.06 0.58 6.68 -51.93 -0.35 0.23 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.89 6.33 -51.93 -0.33 0.56 16 32 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.12 1.65 6.16 -51.93 -0.32 1.33 16 35 H 0.12 2.36 6.29 -51.93 -0.33 2.04 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.50 8.12 -51.93 -0.42 1.08 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -32.13 305.86 -7.40 -39.53 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.95 Total: 3.25 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.57 Total: -2.99 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.56 Total: -47.67 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.13 -7.40 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086067432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.681 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds