Wall clock time and date at job start Mon Mar 30 2020 03:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99793 * 2 1 4 4 C 1.53000 * 109.46769 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99474 * 4 3 2 6 6 C 1.52993 * 109.47345 * 65.00032 * 4 3 2 7 7 C 1.50703 * 109.46801 * 184.99750 * 4 3 2 8 8 O 1.21280 * 120.00262 * 0.02562 * 7 4 3 9 9 N 1.34776 * 119.99815 * 179.97438 * 7 4 3 10 10 C 1.46497 * 119.99939 * 180.02562 * 9 7 4 11 11 C 1.50701 * 109.47589 * 90.00159 * 10 9 7 12 12 H 1.08002 * 119.99536 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00473 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99459 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00198 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47080 * 90.00084 * 15 13 11 17 17 H 1.48496 * 109.47302 * 209.99928 * 15 13 11 18 18 H 1.48499 * 109.47303 * 329.99968 * 15 13 11 19 19 C 1.46500 * 120.00185 * 0.02562 * 9 7 4 20 20 C 1.53000 * 117.49783 * 188.74742 * 19 9 7 21 21 C 1.52996 * 117.49998 * 120.08593 * 19 9 7 22 22 H 1.09002 * 109.46903 * 59.99922 * 1 2 3 23 23 H 1.08998 * 109.46795 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47087 * 299.99901 * 1 2 3 25 25 H 1.00899 * 110.99995 * 236.04398 * 2 1 3 26 26 H 1.09002 * 109.47401 * 59.99808 * 3 2 1 27 27 H 1.09001 * 109.46874 * 299.99821 * 3 2 1 28 28 H 1.09004 * 109.47135 * 179.97438 * 6 4 3 29 29 H 1.09002 * 109.47179 * 299.99584 * 6 4 3 30 30 H 1.08993 * 109.47639 * 59.99724 * 6 4 3 31 31 H 1.09000 * 109.47433 * 210.00029 * 10 9 7 32 32 H 1.09004 * 109.47370 * 329.99721 * 10 9 7 33 33 H 0.97004 * 119.99604 * 179.97438 * 14 13 11 34 34 H 1.09000 * 115.54845 * 334.41378 * 19 9 7 35 35 H 1.08998 * 117.50252 * 0.02562 * 20 19 9 36 36 H 1.09005 * 117.49475 * 145.02239 * 20 19 9 37 37 H 1.09001 * 117.50034 * 214.98247 * 21 19 9 38 38 H 1.09005 * 117.49826 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8727 0.7316 0.8410 6 6 4.0179 0.7078 -1.3082 7 6 4.0648 2.7321 0.1231 8 8 3.3016 3.6711 0.2044 9 7 5.3960 2.9420 0.1446 10 6 5.9209 4.3043 0.2655 11 6 6.0978 4.6472 1.7223 12 1 5.8441 3.9229 2.4821 13 6 6.5824 5.8860 2.0851 14 7 6.8908 6.7682 1.1597 15 14 6.8009 6.3112 3.8908 16 1 8.1661 5.9243 4.3288 17 1 6.6154 7.7722 4.0814 18 1 5.7950 5.5751 4.6980 19 6 6.3181 1.8077 0.0470 20 6 7.8046 2.0835 0.2818 21 6 7.2940 1.7900 -1.1311 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8306 -0.5261 -0.7813 26 1 1.6459 1.8949 0.8900 27 1 1.6459 1.8947 -0.8900 28 1 5.1076 0.6792 -1.3088 29 1 3.6274 -0.3059 -1.3978 30 1 3.6702 1.3068 -2.1498 31 1 6.8831 4.3694 -0.2424 32 1 5.2214 5.0051 -0.1904 33 1 7.2314 7.6399 1.4150 34 1 5.9237 0.8506 0.3884 35 1 8.0965 3.1088 0.5093 36 1 8.3883 1.3076 0.7772 37 1 7.5420 0.8212 -1.5647 38 1 7.2498 2.6221 -1.8339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086067432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:44 Heat of formation + Delta-G solvation = -32.178495 kcal Electronic energy + Delta-G solvation = -17922.312498 eV Core-core repulsion = 15185.695875 eV Total energy + Delta-G solvation = -2736.616622 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18635 -38.44267 -37.45601 -35.26472 -34.03180 -33.41197 -29.46643 -27.74289 -25.90714 -24.90490 -23.58062 -23.14925 -22.02336 -19.69542 -18.66264 -18.30596 -17.39029 -16.91941 -16.40064 -16.03021 -15.67333 -15.11872 -14.99074 -14.63055 -14.33673 -14.03282 -13.66342 -13.40003 -13.22366 -13.07918 -12.80947 -12.62409 -12.45239 -12.25658 -12.19733 -12.16474 -12.08084 -11.80253 -11.38152 -11.34239 -10.65046 -10.45294 -9.46779 -9.24802 -8.22818 -6.37261 1.34557 1.37542 1.47818 1.75880 2.19878 2.40057 3.05777 3.08966 3.25949 3.67587 3.91680 3.95895 3.99122 4.07780 4.24241 4.37895 4.52672 4.57587 4.73771 4.80191 4.87676 4.91950 4.96826 5.02655 5.03410 5.07339 5.15862 5.27086 5.35957 5.42841 5.55479 5.82637 5.91257 6.05400 6.49047 6.68768 6.79018 7.27175 7.45629 8.83787 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024017 B = 0.006954 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.583352 B = 4025.324894 C = 4747.516722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.691 5.691 3 C 0.086 3.914 4 C -0.094 4.094 5 H 0.115 0.885 6 C -0.147 4.147 7 C 0.502 3.498 8 O -0.600 6.600 9 N -0.575 5.575 10 C 0.262 3.738 11 C -0.533 4.533 12 H 0.050 0.950 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.281 1.281 18 H -0.275 1.275 19 C 0.059 3.941 20 C -0.187 4.187 21 C -0.176 4.176 22 H 0.023 0.977 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.352 0.648 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.044 0.956 31 H 0.026 0.974 32 H -0.009 1.009 33 H 0.267 0.733 34 H 0.158 0.842 35 H 0.072 0.928 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 -17.694 -4.621 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.324 5.324 3 C -0.044 4.044 4 C -0.116 4.116 5 H 0.133 0.867 6 C -0.204 4.204 7 C 0.291 3.709 8 O -0.482 6.482 9 N -0.303 5.303 10 C 0.141 3.859 11 C -0.572 4.572 12 H 0.068 0.932 13 C -0.190 4.190 14 N -0.569 5.569 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.207 1.207 18 H -0.200 1.200 19 C -0.045 4.045 20 C -0.224 4.224 21 C -0.215 4.215 22 H 0.041 0.959 23 H 0.110 0.890 24 H 0.074 0.926 25 H 0.172 0.828 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.009 0.991 33 H 0.075 0.925 34 H 0.175 0.825 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.622 -17.088 -3.932 17.905 hybrid contribution -0.095 1.606 -0.016 1.609 sum -3.717 -15.482 -3.948 16.404 Atomic orbital electron populations 1.22249 0.86798 1.03022 1.00312 1.60408 1.08758 1.12673 1.50571 1.21515 0.92852 0.89930 1.00063 1.21198 0.95958 0.91433 1.02974 0.86673 1.22026 1.03683 1.01479 0.93252 1.21337 0.81844 0.92246 0.75489 1.90628 1.57927 1.47024 1.52622 1.47690 1.05344 1.07843 1.69449 1.18689 0.92879 0.78429 0.95886 1.21609 1.42991 0.99828 0.92764 0.93183 1.25825 0.94969 0.95818 1.02434 1.70056 1.45020 1.06959 1.34870 0.85442 0.78959 0.77298 0.79290 1.18668 1.20674 1.19950 1.22051 0.87191 0.90692 1.04526 1.23364 0.95825 1.03252 1.00001 1.23487 1.02729 1.04201 0.91047 0.95851 0.89049 0.92581 0.82800 0.92971 0.95894 0.89552 0.88380 0.93659 0.95584 0.99075 0.92461 0.82530 0.90942 0.85469 0.84141 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.70 127.69 1.37 1.84 16 2 N -0.69 -14.95 6.85 -537.13 -3.68 -18.63 16 3 C 0.09 2.55 4.49 86.30 0.39 2.93 16 4 C -0.09 -2.76 2.14 -11.54 -0.02 -2.78 16 5 H 0.12 3.05 7.57 -2.39 -0.02 3.03 16 6 C -0.15 -3.11 8.58 71.98 0.62 -2.50 16 7 C 0.50 21.72 7.07 87.66 0.62 22.34 16 8 O -0.60 -32.51 15.50 -3.03 -0.05 -32.56 16 9 N -0.57 -25.02 2.79 -802.14 -2.24 -27.27 16 10 C 0.26 14.49 4.46 85.63 0.38 14.87 16 11 C -0.53 -31.35 9.18 25.60 0.24 -31.11 16 12 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 13 C 0.01 0.49 5.46 84.65 0.46 0.95 16 14 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 15 Si 0.97 45.83 29.54 68.60 2.03 47.86 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 18 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 19 C 0.06 1.85 4.33 44.99 0.19 2.04 16 20 C -0.19 -5.82 9.72 30.62 0.30 -5.52 16 21 C -0.18 -4.62 9.31 30.62 0.28 -4.34 16 22 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 23 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.35 5.85 7.07 -89.69 -0.63 5.22 16 26 H 0.05 1.83 7.95 -2.39 -0.02 1.82 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 1.71 4.42 -2.38 -0.01 1.69 16 29 H 0.10 1.38 6.68 -2.39 -0.02 1.37 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.03 1.46 6.33 -2.39 -0.02 1.45 16 32 H -0.01 -0.57 7.42 -2.38 -0.02 -0.59 16 33 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 34 H 0.16 3.68 6.16 -2.39 -0.01 3.67 16 35 H 0.07 2.97 6.29 -2.39 -0.02 2.96 16 36 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 37 H 0.14 2.40 8.14 -2.39 -0.02 2.39 16 38 H 0.07 2.25 8.12 -2.38 -0.02 2.23 16 Total: -1.00 -75.48 305.86 1.58 -73.90 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.41 Total: 14.76 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 4.82 Total: -1.28 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -5.64 Total: -102.68 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.05 Total: -32.56 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -75.48 1.58 -73.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086067432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.721 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds