Wall clock time and date at job start Mon Mar 30 2020 04:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46812 * 2 1 4 4 C 1.46498 * 119.99872 * 267.05625 * 3 2 1 5 5 C 1.50697 * 109.47153 * 270.00185 * 4 3 2 6 6 H 1.07992 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99892 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00159 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47415 * 89.99801 * 9 7 5 11 11 H 1.48499 * 109.47322 * 210.00159 * 9 7 5 12 12 H 1.48508 * 109.46892 * 329.99664 * 9 7 5 13 13 C 1.34774 * 119.99867 * 87.05827 * 3 2 1 14 14 O 1.21278 * 120.00234 * 5.19272 * 13 3 2 15 15 C 1.50703 * 119.99958 * 184.91631 * 13 3 2 16 16 H 1.08999 * 110.27399 * 31.99481 * 15 13 3 17 17 C 1.54595 * 110.30852 * 269.91015 * 15 13 3 18 18 C 1.55105 * 102.84321 * 219.18608 * 17 15 13 19 19 N 1.48528 * 103.28750 * 37.30220 * 18 17 15 20 20 C 1.47909 * 105.81937 * 320.85087 * 19 18 17 21 21 H 1.08996 * 110.07960 * 144.77397 * 20 19 18 22 22 C 1.52998 * 109.91444 * 265.97394 * 20 19 18 23 23 H 1.08995 * 109.47004 * 295.74372 * 1 2 3 24 24 H 1.08994 * 109.47266 * 55.74679 * 1 2 3 25 25 H 1.09007 * 109.46756 * 175.74717 * 1 2 3 26 26 H 1.08993 * 109.47128 * 240.00106 * 2 1 3 27 27 H 1.08999 * 109.46786 * 119.99826 * 2 1 3 28 28 H 1.09000 * 109.47041 * 30.00579 * 4 3 2 29 29 H 1.09002 * 109.47114 * 149.99968 * 4 3 2 30 30 H 0.96997 * 120.00347 * 179.97438 * 8 7 5 31 31 H 1.09001 * 110.72285 * 337.47864 * 17 15 13 32 32 H 1.08998 * 110.72889 * 100.76748 * 17 15 13 33 33 H 1.09004 * 110.59410 * 278.86958 * 18 17 15 34 34 H 1.08999 * 110.83044 * 155.85060 * 18 17 15 35 35 H 1.00896 * 111.00568 * 200.33266 * 19 18 17 36 36 H 1.09002 * 109.47030 * 177.58678 * 22 20 19 37 37 H 1.08995 * 109.47525 * 297.59591 * 22 20 19 38 38 H 1.09013 * 109.47119 * 57.59108 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3239 2.0501 -1.2671 5 6 3.7664 1.8065 -1.6286 6 1 4.3930 1.2132 -0.9793 7 6 4.2865 2.3420 -2.7878 8 7 3.5235 3.0650 -3.5783 9 14 6.0744 2.0395 -3.2364 10 1 6.1774 0.8048 -4.0549 11 1 6.5917 3.1938 -4.0144 12 1 6.8756 1.8796 -1.9962 13 6 2.1864 2.0365 1.1657 14 8 2.0244 1.4546 2.2173 15 6 2.5819 3.4907 1.1623 16 1 2.1647 3.9936 0.2899 17 6 4.1217 3.6281 1.1755 18 6 4.3524 4.8307 2.1275 19 7 3.3106 4.6458 3.1698 20 6 2.1034 4.1777 2.4548 21 1 1.5550 3.4664 3.0722 22 6 1.2067 5.3687 2.1108 23 1 -0.3633 0.4463 0.9256 24 1 -0.3633 0.5784 -0.8494 25 1 -0.3633 -1.0249 -0.0762 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6804 1.6528 -2.0520 29 1 2.1512 3.1213 -1.1633 30 1 3.8894 3.4420 -4.3936 31 1 4.5859 2.7262 1.5745 32 1 4.4980 3.8473 0.1763 33 1 4.2045 5.7723 1.5985 34 1 5.3486 4.7909 2.5679 35 1 3.1295 5.5103 3.6576 36 1 0.3411 5.0209 1.5470 37 1 0.8725 5.8494 3.0302 38 1 1.7680 6.0845 1.5100 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086271336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:07 Heat of formation + Delta-G solvation = -44.332885 kcal Electronic energy + Delta-G solvation = -18416.578333 eV Core-core repulsion = 15679.434657 eV Total energy + Delta-G solvation = -2737.143676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74780 -37.48657 -35.10745 -32.80140 -31.13987 -30.73635 -29.39709 -27.01309 -25.72811 -23.09631 -22.89005 -20.86242 -20.17152 -18.06685 -16.68036 -16.39136 -16.01295 -15.32572 -14.77912 -14.43988 -13.88585 -13.53432 -13.03366 -12.87986 -12.52875 -12.43166 -12.25445 -12.09951 -11.78702 -11.53840 -11.37014 -11.20172 -11.00944 -10.92776 -10.81866 -10.52387 -10.39604 -10.26780 -10.03158 -9.72038 -8.91465 -8.53652 -8.21830 -7.67670 -6.19553 -4.26043 3.21031 3.28689 3.31690 3.45405 3.95890 4.32544 4.54609 5.01572 5.12715 5.20291 5.28568 5.48164 5.55951 5.62968 5.71106 5.79112 5.84858 5.90448 5.96130 6.02563 6.16113 6.24140 6.28355 6.44401 6.50639 6.61715 6.65952 6.72907 6.82543 7.12185 7.20057 7.56981 7.61265 7.76485 8.05899 8.38707 8.80155 9.08596 9.41413 10.86972 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.009926 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.044342 B = 2820.189554 C = 3759.551589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.596 5.596 4 C 0.237 3.763 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.525 3.475 14 O -0.570 6.570 15 C -0.108 4.108 16 H 0.099 0.901 17 C -0.097 4.097 18 C 0.036 3.964 19 N -0.663 5.663 20 C 0.076 3.924 21 H 0.099 0.901 22 C -0.176 4.176 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.330 0.670 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 3.059 6.318 7.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.326 5.326 4 C 0.117 3.883 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.314 3.686 14 O -0.450 6.450 15 C -0.130 4.130 16 H 0.117 0.883 17 C -0.135 4.135 18 C -0.093 4.093 19 N -0.291 5.291 20 C -0.034 4.034 21 H 0.117 0.883 22 C -0.234 4.234 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.671 2.193 6.908 7.725 hybrid contribution 0.662 0.751 -1.126 1.507 sum -2.009 2.944 5.782 6.793 Atomic orbital electron populations 1.22116 0.96996 1.01209 1.01821 1.21214 0.93233 0.84062 1.02395 1.48239 1.63106 1.13277 1.08023 1.19450 0.96316 0.93174 0.79395 1.21480 0.95729 1.33014 1.06772 0.92091 1.24925 0.98028 0.94856 0.95987 1.69921 1.35978 1.33974 1.13196 0.86564 0.84775 0.77891 0.78710 1.20568 1.21095 1.19654 1.20222 0.76277 0.88819 0.83328 1.90575 1.53707 1.69211 1.31554 1.22110 0.98416 0.93930 0.98561 0.88267 1.22353 0.92856 0.97974 1.00341 1.23112 0.96252 0.97391 0.92586 1.63248 1.07001 1.33812 1.25070 1.22292 0.91156 0.95959 0.94018 0.88287 1.22489 1.00670 0.98790 1.01488 0.92924 0.92627 0.92445 0.90535 0.91249 0.94821 0.94372 0.92576 0.91011 0.88923 0.94258 0.90378 0.85458 0.91866 0.92530 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.22 37.16 0.38 -2.25 16 2 C 0.11 2.16 6.14 -4.04 -0.02 2.14 16 3 N -0.60 -12.71 2.46 -175.06 -0.43 -13.14 16 4 C 0.24 5.53 5.03 -5.20 -0.03 5.51 16 5 C -0.53 -13.49 8.85 -34.44 -0.30 -13.79 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -24.06 13.29 55.43 0.74 -23.32 16 9 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 13 C 0.53 11.24 6.64 -10.99 -0.07 11.17 16 14 O -0.57 -13.31 15.24 5.56 0.08 -13.23 16 15 C -0.11 -2.04 2.30 -90.42 -0.21 -2.25 16 16 H 0.10 1.90 5.64 -51.93 -0.29 1.61 16 17 C -0.10 -1.79 6.42 -24.78 -0.16 -1.95 16 18 C 0.04 0.54 7.54 -1.81 -0.01 0.53 16 19 N -0.66 -10.17 7.38 -103.04 -0.76 -10.93 16 20 C 0.08 1.24 3.55 -66.64 -0.24 1.01 16 21 H 0.10 1.84 6.79 -51.93 -0.35 1.48 16 22 C -0.18 -2.34 8.93 37.16 0.33 -2.01 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 26 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 27 H 0.07 1.34 7.44 -51.93 -0.39 0.95 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 0.92 5.78 -51.93 -0.30 0.62 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.07 1.45 7.86 -51.93 -0.41 1.04 16 32 H 0.09 1.82 7.80 -51.93 -0.40 1.42 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.33 4.18 8.43 -39.29 -0.33 3.85 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 307.43 15.07 4.63 4.63 Total: -1.00 -28.30 307.43 -7.43 -35.73 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.24 Total: 5.35 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -0.43 Total: -0.33 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.46 Total: -47.40 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.30 -7.43 -35.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086271336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.605 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds