Wall clock time and date at job start Mon Mar 30 2020 04:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46812 * 2 1 4 4 C 1.46498 * 119.99872 * 267.05625 * 3 2 1 5 5 C 1.50697 * 109.47153 * 270.00185 * 4 3 2 6 6 H 1.07992 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99892 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00159 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47415 * 89.99801 * 9 7 5 11 11 H 1.48499 * 109.47322 * 210.00159 * 9 7 5 12 12 H 1.48508 * 109.46892 * 329.99664 * 9 7 5 13 13 C 1.34774 * 119.99867 * 87.05827 * 3 2 1 14 14 O 1.21278 * 120.00234 * 5.19272 * 13 3 2 15 15 C 1.50703 * 119.99958 * 184.91631 * 13 3 2 16 16 H 1.08999 * 110.27399 * 31.99481 * 15 13 3 17 17 C 1.54595 * 110.30852 * 269.91015 * 15 13 3 18 18 C 1.55105 * 102.84321 * 219.18608 * 17 15 13 19 19 N 1.48528 * 103.28750 * 37.30220 * 18 17 15 20 20 C 1.47909 * 105.81937 * 320.85087 * 19 18 17 21 21 H 1.08996 * 110.07960 * 144.77397 * 20 19 18 22 22 C 1.52998 * 109.91444 * 265.97394 * 20 19 18 23 23 H 1.08995 * 109.47004 * 295.74372 * 1 2 3 24 24 H 1.08994 * 109.47266 * 55.74679 * 1 2 3 25 25 H 1.09007 * 109.46756 * 175.74717 * 1 2 3 26 26 H 1.08993 * 109.47128 * 240.00106 * 2 1 3 27 27 H 1.08999 * 109.46786 * 119.99826 * 2 1 3 28 28 H 1.09000 * 109.47041 * 30.00579 * 4 3 2 29 29 H 1.09002 * 109.47114 * 149.99968 * 4 3 2 30 30 H 0.96997 * 120.00347 * 179.97438 * 8 7 5 31 31 H 1.09001 * 110.72285 * 337.47864 * 17 15 13 32 32 H 1.08998 * 110.72889 * 100.76748 * 17 15 13 33 33 H 1.09004 * 110.59410 * 278.86958 * 18 17 15 34 34 H 1.08999 * 110.83044 * 155.85060 * 18 17 15 35 35 H 1.00896 * 111.00568 * 200.33266 * 19 18 17 36 36 H 1.09002 * 109.47030 * 177.58678 * 22 20 19 37 37 H 1.08995 * 109.47525 * 297.59591 * 22 20 19 38 38 H 1.09013 * 109.47119 * 57.59108 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3239 2.0501 -1.2671 5 6 3.7664 1.8065 -1.6286 6 1 4.3930 1.2132 -0.9793 7 6 4.2865 2.3420 -2.7878 8 7 3.5235 3.0650 -3.5783 9 14 6.0744 2.0395 -3.2364 10 1 6.1774 0.8048 -4.0549 11 1 6.5917 3.1938 -4.0144 12 1 6.8756 1.8796 -1.9962 13 6 2.1864 2.0365 1.1657 14 8 2.0244 1.4546 2.2173 15 6 2.5819 3.4907 1.1623 16 1 2.1647 3.9936 0.2899 17 6 4.1217 3.6281 1.1755 18 6 4.3524 4.8307 2.1275 19 7 3.3106 4.6458 3.1698 20 6 2.1034 4.1777 2.4548 21 1 1.5550 3.4664 3.0722 22 6 1.2067 5.3687 2.1108 23 1 -0.3633 0.4463 0.9256 24 1 -0.3633 0.5784 -0.8494 25 1 -0.3633 -1.0249 -0.0762 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6804 1.6528 -2.0520 29 1 2.1512 3.1213 -1.1633 30 1 3.8894 3.4420 -4.3936 31 1 4.5859 2.7262 1.5745 32 1 4.4980 3.8473 0.1763 33 1 4.2045 5.7723 1.5985 34 1 5.3486 4.7909 2.5679 35 1 3.1295 5.5103 3.6576 36 1 0.3411 5.0209 1.5470 37 1 0.8725 5.8494 3.0302 38 1 1.7680 6.0845 1.5100 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086271336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:07 Heat of formation + Delta-G solvation = -62.505096 kcal Electronic energy + Delta-G solvation = -18417.366339 eV Core-core repulsion = 15679.434657 eV Total energy + Delta-G solvation = -2737.931682 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33828 -38.94237 -36.88644 -34.72034 -32.68019 -31.98389 -30.87460 -28.90666 -27.00701 -24.95734 -24.42452 -22.24947 -21.56778 -19.72922 -18.52141 -18.17587 -17.46370 -16.91609 -16.42121 -16.09449 -15.46855 -14.92777 -14.49782 -14.31152 -14.20719 -13.83356 -13.70004 -13.47603 -13.27560 -13.14425 -13.02340 -12.71979 -12.61596 -12.54840 -12.34797 -12.14770 -11.84906 -11.81952 -11.71952 -11.54995 -10.70928 -10.45822 -9.46695 -9.41070 -8.19343 -6.32282 1.40289 1.43452 1.52120 1.74761 2.29490 2.45156 3.10847 3.29963 3.64014 3.75157 3.91241 4.12676 4.26587 4.32446 4.38303 4.42314 4.48721 4.53235 4.63281 4.73032 4.82227 4.94024 4.99580 5.02777 5.08048 5.13813 5.16797 5.22243 5.30123 5.31157 5.67120 5.83276 5.89459 6.07588 6.53135 6.58644 6.82613 7.31552 7.42870 8.86169 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.009926 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.044342 B = 2820.189554 C = 3759.551589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.252 3.748 5 C -0.536 4.536 6 H 0.048 0.952 7 C 0.026 3.974 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.271 1.271 13 C 0.520 3.480 14 O -0.592 6.592 15 C -0.109 4.109 16 H 0.094 0.906 17 C -0.097 4.097 18 C 0.046 3.954 19 N -0.670 5.670 20 C 0.081 3.919 21 H 0.076 0.924 22 C -0.167 4.167 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.020 0.980 29 H 0.032 0.968 30 H 0.267 0.733 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.349 0.651 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 3.905 6.652 8.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.330 5.330 4 C 0.132 3.868 5 C -0.575 4.575 6 H 0.066 0.934 7 C -0.174 4.174 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.196 1.196 13 C 0.309 3.691 14 O -0.475 6.475 15 C -0.131 4.131 16 H 0.112 0.888 17 C -0.135 4.135 18 C -0.083 4.083 19 N -0.301 5.301 20 C -0.029 4.029 21 H 0.094 0.906 22 C -0.226 4.226 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.167 0.833 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.433 3.040 7.248 8.228 hybrid contribution 0.576 0.432 -1.217 1.414 sum -1.857 3.473 6.031 7.203 Atomic orbital electron populations 1.22008 0.94563 1.03114 1.01236 1.21401 0.95263 0.82841 1.02092 1.48302 1.63128 1.14171 1.07423 1.19122 0.95118 0.92815 0.79767 1.21556 0.96442 1.32775 1.06695 0.93387 1.25543 1.01408 0.94595 0.95871 1.69997 1.37473 1.34650 1.13585 0.85681 0.80613 0.77863 0.78321 1.20322 1.20444 1.19598 1.20689 0.75686 0.89888 0.82857 1.90551 1.54786 1.70038 1.32129 1.22154 0.98685 0.92346 0.99870 0.88750 1.22269 0.92359 0.98640 1.00268 1.23064 0.96960 0.96371 0.91904 1.63161 1.06506 1.35283 1.25135 1.22144 0.91886 0.96611 0.92249 0.90573 1.22407 0.99888 0.97526 1.02783 0.93732 0.92802 0.89359 0.90453 0.91853 0.96179 0.95014 0.92343 0.93392 0.90544 0.92309 0.88890 0.83328 0.92184 0.90088 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 10.22 71.98 0.74 -4.01 16 2 C 0.11 4.06 6.14 86.38 0.53 4.59 16 3 N -0.60 -26.01 2.46 -826.17 -2.03 -28.05 16 4 C 0.25 12.00 5.03 85.63 0.43 12.43 16 5 C -0.54 -27.48 8.85 25.60 0.23 -27.26 16 6 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 7 C 0.03 1.35 5.46 84.65 0.46 1.82 16 8 N -0.92 -49.35 13.29 21.45 0.28 -49.06 16 9 Si 0.95 41.27 29.54 68.60 2.03 43.30 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.52 22.59 6.64 87.66 0.58 23.17 16 14 O -0.59 -28.13 15.24 -3.02 -0.05 -28.18 16 15 C -0.11 -4.10 2.30 -10.66 -0.02 -4.13 16 16 H 0.09 3.63 5.64 -2.39 -0.01 3.62 16 17 C -0.10 -3.58 6.42 31.86 0.20 -3.38 16 18 C 0.05 1.31 7.54 86.71 0.65 1.96 16 19 N -0.67 -19.27 7.38 -479.90 -3.54 -22.81 16 20 C 0.08 2.59 3.55 45.05 0.16 2.75 16 21 H 0.08 2.81 6.79 -2.39 -0.02 2.79 16 22 C -0.17 -4.11 8.93 71.98 0.64 -3.46 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.08 2.88 8.05 -2.39 -0.02 2.86 16 27 H 0.06 2.47 7.44 -2.39 -0.02 2.45 16 28 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 29 H 0.03 1.56 5.78 -2.39 -0.01 1.54 16 30 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 31 H 0.05 1.97 7.86 -2.39 -0.02 1.95 16 32 H 0.08 3.04 7.80 -2.39 -0.02 3.02 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.35 7.81 8.43 -89.70 -0.76 7.05 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -59.86 307.43 1.57 -58.29 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.28 Total: 22.05 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 4.60 Total: 4.47 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -5.29 Total: -99.92 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.05 Total: -28.18 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -59.86 1.57 -58.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086271336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.219 kcal (2) G-P(sol) polarization free energy of solvation -59.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds