Wall clock time and date at job start Mon Mar 30 2020 03:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46913 * 2 1 4 4 C 1.50701 * 109.47214 * 239.99748 * 2 1 3 5 5 H 1.07992 * 119.99895 * 240.00053 * 4 2 1 6 6 C 1.37882 * 119.99703 * 59.99847 * 4 2 1 7 7 N 1.31508 * 120.00188 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99369 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47672 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46791 * 120.00176 * 8 6 4 11 11 H 1.48500 * 109.47089 * 239.99883 * 8 6 4 12 12 N 1.46496 * 109.47011 * 119.99575 * 2 1 3 13 13 C 1.34779 * 120.00356 * 274.99993 * 12 2 1 14 14 O 1.21289 * 119.99796 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00219 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47085 * 184.18505 * 15 13 12 17 17 C 1.52994 * 112.85060 * 294.05997 * 16 15 13 18 18 N 1.46899 * 109.47046 * 305.18653 * 17 16 15 19 19 C 1.53784 * 113.61403 * 162.86415 * 16 15 13 20 20 C 1.53953 * 87.02004 * 220.04519 * 19 16 15 21 21 C 1.53778 * 87.10980 * 25.36455 * 20 19 16 22 22 H 1.08997 * 109.47104 * 300.00526 * 1 2 3 23 23 H 1.09005 * 109.46897 * 60.00084 * 1 2 3 24 24 H 1.08999 * 109.46885 * 180.02562 * 1 2 3 25 25 H 0.97003 * 119.99549 * 179.97438 * 7 6 4 26 26 H 0.97003 * 120.00210 * 94.99969 * 12 2 1 27 27 H 1.08999 * 109.47381 * 64.18033 * 15 13 12 28 28 H 1.09006 * 109.47235 * 304.18159 * 15 13 12 29 29 H 1.09008 * 109.47219 * 65.18426 * 17 16 15 30 30 H 1.08998 * 109.47745 * 185.18422 * 17 16 15 31 31 H 1.00903 * 111.00028 * 174.82530 * 18 17 16 32 32 H 1.00897 * 111.00095 * 298.78169 * 18 17 16 33 33 H 1.08998 * 113.61507 * 334.56733 * 19 16 15 34 34 H 1.09005 * 113.61161 * 105.47170 * 19 16 15 35 35 H 1.09003 * 113.53898 * 270.81570 * 20 19 16 36 36 H 1.09000 * 113.74403 * 139.94177 * 20 19 16 37 37 H 1.09009 * 113.61469 * 220.08863 * 21 20 19 38 38 H 1.08998 * 113.69272 * 89.19795 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1455 -2.2879 -3.6037 10 1 1.1661 -1.5869 -4.8159 11 1 3.1467 -0.1876 -4.8165 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0181 2.3572 14 8 1.8582 1.1586 2.4117 15 6 2.6499 -0.7283 3.5875 16 6 2.6027 0.2261 4.7824 17 6 3.5727 1.4011 4.6429 18 7 4.9296 0.8904 4.4062 19 6 2.6886 -0.4855 6.1429 20 6 1.6299 0.5144 6.6423 21 6 1.1778 0.6474 5.1785 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1610 -3.4845 26 1 2.2491 -1.6317 1.1527 27 1 3.6767 -1.0554 3.4241 28 1 2.0204 -1.5949 3.7896 29 1 3.2681 2.0261 3.8034 30 1 3.5616 1.9921 5.5587 31 1 5.5741 1.6458 4.2269 32 1 5.2428 0.3238 5.1800 33 1 2.3379 -1.5172 6.1190 34 1 3.6570 -0.3777 6.6317 35 1 2.0553 1.4302 7.0528 36 1 0.8774 0.0686 7.2928 37 1 0.9281 1.6684 4.8896 38 1 0.4131 -0.0734 4.8890 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088050976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:26 Heat of formation + Delta-G solvation = -31.943455 kcal Electronic energy + Delta-G solvation = -17859.177337 eV Core-core repulsion = 15122.570906 eV Total energy + Delta-G solvation = -2736.606430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.00144 -37.94672 -34.61736 -33.51922 -32.26645 -30.26540 -28.30260 -25.65970 -25.24061 -25.04761 -22.55142 -20.86247 -19.20987 -18.09910 -16.88064 -16.01989 -15.59482 -15.45093 -14.95824 -14.65960 -14.21065 -13.84728 -13.70698 -13.07642 -12.50685 -12.34236 -12.23993 -11.94032 -11.59862 -11.25645 -11.19481 -11.01899 -10.84493 -10.64848 -10.46505 -10.21190 -10.17760 -10.11236 -9.92392 -8.95465 -8.69184 -8.50145 -8.46334 -7.73242 -6.06220 -4.14614 3.27367 3.34966 3.38188 3.66676 4.21330 4.42276 4.58035 4.75427 4.80323 4.92168 5.21358 5.25977 5.29452 5.54261 5.64350 5.78046 5.82819 5.90609 5.92199 6.05081 6.13205 6.27389 6.41125 6.51644 6.62935 6.90813 7.05205 7.24555 7.26326 7.54881 7.60165 7.69086 7.79269 8.01756 8.23594 8.82759 8.89965 9.33306 9.54375 10.99830 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042138 B = 0.005369 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.323303 B = 5213.534590 C = 5441.828771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.715 5.715 13 C 0.508 3.492 14 O -0.556 6.556 15 C -0.121 4.121 16 C -0.052 4.052 17 C 0.081 3.919 18 N -0.846 5.846 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.121 4.121 22 H 0.013 0.987 23 H 0.088 0.912 24 H 0.024 0.976 25 H 0.262 0.738 26 H 0.386 0.614 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.019 0.981 31 H 0.340 0.660 32 H 0.331 0.669 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -2.957 15.604 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.362 5.362 13 C 0.294 3.706 14 O -0.436 6.436 15 C -0.162 4.162 16 C -0.053 4.053 17 C -0.049 4.049 18 N -0.374 5.374 19 C -0.171 4.171 20 C -0.183 4.183 21 C -0.159 4.159 22 H 0.033 0.967 23 H 0.107 0.893 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.218 0.782 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.037 0.963 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.212 -2.351 14.829 15.354 hybrid contribution 0.645 -0.435 -0.088 0.783 sum 3.857 -2.786 14.741 15.490 Atomic orbital electron populations 1.22065 0.98731 0.98897 1.00725 1.18667 0.90798 0.93948 0.80306 0.93565 1.21294 1.32035 1.13055 0.90447 0.92121 1.24893 0.94893 0.94984 0.99038 1.69920 1.36143 1.22613 1.23607 0.86415 0.78570 0.79557 0.82675 1.19747 1.20948 1.20920 1.46519 1.65526 1.13434 1.10746 1.20399 0.78021 0.87542 0.84647 1.90567 1.51482 1.16230 1.85275 1.21563 1.03125 0.98164 0.93305 1.21449 0.95887 0.95256 0.92699 1.21681 0.87682 0.95116 1.00409 1.58588 1.03838 1.27281 1.47732 1.23057 0.98818 0.98699 0.96554 1.22893 0.98796 0.99325 0.97250 1.22853 0.96094 1.02599 0.94329 0.96743 0.89343 0.95672 0.92750 0.78211 0.88419 0.90562 0.88381 0.96276 0.84792 0.85690 0.90157 0.92120 0.90706 0.91863 0.90896 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.94 2.56 -69.08 -0.18 6.76 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.43 8.73 -34.44 -0.30 -14.73 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.71 -15.43 5.07 -54.93 -0.28 -15.71 16 13 C 0.51 10.28 7.45 -10.99 -0.08 10.20 16 14 O -0.56 -13.00 13.17 5.55 0.07 -12.92 16 15 C -0.12 -1.83 5.00 -27.89 -0.14 -1.97 16 16 C -0.05 -0.70 0.46 -153.70 -0.07 -0.77 16 17 C 0.08 1.13 5.77 -3.83 -0.02 1.11 16 18 N -0.85 -10.31 8.79 -10.37 -0.09 -10.40 16 19 C -0.13 -1.42 7.14 -25.83 -0.18 -1.61 16 20 C -0.15 -1.57 7.74 -25.83 -0.20 -1.77 16 21 C -0.12 -1.66 6.20 -25.92 -0.16 -1.82 16 22 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.39 7.34 8.54 -40.82 -0.35 6.99 16 27 H 0.10 1.43 7.54 -51.93 -0.39 1.04 16 28 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 29 H 0.10 1.73 6.26 -51.92 -0.32 1.41 16 30 H 0.02 0.24 7.32 -51.93 -0.38 -0.14 16 31 H 0.34 3.72 9.08 -39.29 -0.36 3.36 16 32 H 0.33 3.32 8.45 -39.29 -0.33 2.99 16 33 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 34 H 0.06 0.58 7.60 -51.93 -0.39 0.18 16 35 H 0.07 0.77 7.61 -51.93 -0.40 0.38 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.13 8.09 -51.92 -0.42 0.71 16 38 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -30.51 303.62 -7.32 -37.83 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.12 Total: 11.74 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.09 Total: -6.30 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.26 Total: -50.95 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.07 Total: -12.92 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.51 -7.32 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088050976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.883 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds