Wall clock time and date at job start Mon Mar 30 2020 03:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46913 * 2 1 4 4 C 1.50701 * 109.47214 * 239.99748 * 2 1 3 5 5 H 1.07992 * 119.99895 * 240.00053 * 4 2 1 6 6 C 1.37882 * 119.99703 * 59.99847 * 4 2 1 7 7 N 1.31508 * 120.00188 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99369 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47672 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46791 * 120.00176 * 8 6 4 11 11 H 1.48500 * 109.47089 * 239.99883 * 8 6 4 12 12 N 1.46496 * 109.47011 * 119.99575 * 2 1 3 13 13 C 1.34779 * 120.00356 * 274.99993 * 12 2 1 14 14 O 1.21289 * 119.99796 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00219 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47085 * 184.18505 * 15 13 12 17 17 C 1.52994 * 112.85060 * 294.05997 * 16 15 13 18 18 N 1.46899 * 109.47046 * 305.18653 * 17 16 15 19 19 C 1.53784 * 113.61403 * 162.86415 * 16 15 13 20 20 C 1.53953 * 87.02004 * 220.04519 * 19 16 15 21 21 C 1.53778 * 87.10980 * 25.36455 * 20 19 16 22 22 H 1.08997 * 109.47104 * 300.00526 * 1 2 3 23 23 H 1.09005 * 109.46897 * 60.00084 * 1 2 3 24 24 H 1.08999 * 109.46885 * 180.02562 * 1 2 3 25 25 H 0.97003 * 119.99549 * 179.97438 * 7 6 4 26 26 H 0.97003 * 120.00210 * 94.99969 * 12 2 1 27 27 H 1.08999 * 109.47381 * 64.18033 * 15 13 12 28 28 H 1.09006 * 109.47235 * 304.18159 * 15 13 12 29 29 H 1.09008 * 109.47219 * 65.18426 * 17 16 15 30 30 H 1.08998 * 109.47745 * 185.18422 * 17 16 15 31 31 H 1.00903 * 111.00028 * 174.82530 * 18 17 16 32 32 H 1.00897 * 111.00095 * 298.78169 * 18 17 16 33 33 H 1.08998 * 113.61507 * 334.56733 * 19 16 15 34 34 H 1.09005 * 113.61161 * 105.47170 * 19 16 15 35 35 H 1.09003 * 113.53898 * 270.81570 * 20 19 16 36 36 H 1.09000 * 113.74403 * 139.94177 * 20 19 16 37 37 H 1.09009 * 113.61469 * 220.08863 * 21 20 19 38 38 H 1.08998 * 113.69272 * 89.19795 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1455 -2.2879 -3.6037 10 1 1.1661 -1.5869 -4.8159 11 1 3.1467 -0.1876 -4.8165 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0181 2.3572 14 8 1.8582 1.1586 2.4117 15 6 2.6499 -0.7283 3.5875 16 6 2.6027 0.2261 4.7824 17 6 3.5727 1.4011 4.6429 18 7 4.9296 0.8904 4.4062 19 6 2.6886 -0.4855 6.1429 20 6 1.6299 0.5144 6.6423 21 6 1.1778 0.6474 5.1785 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1610 -3.4845 26 1 2.2491 -1.6317 1.1527 27 1 3.6767 -1.0554 3.4241 28 1 2.0204 -1.5949 3.7896 29 1 3.2681 2.0261 3.8034 30 1 3.5616 1.9921 5.5587 31 1 5.5741 1.6458 4.2269 32 1 5.2428 0.3238 5.1800 33 1 2.3379 -1.5172 6.1190 34 1 3.6570 -0.3777 6.6317 35 1 2.0553 1.4302 7.0528 36 1 0.8774 0.0686 7.2928 37 1 0.9281 1.6684 4.8896 38 1 0.4131 -0.0734 4.8890 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088050976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:26 Heat of formation + Delta-G solvation = -54.234879 kcal Electronic energy + Delta-G solvation = -17860.143965 eV Core-core repulsion = 15122.570906 eV Total energy + Delta-G solvation = -2737.573059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23754 -39.45944 -36.56635 -34.53479 -34.24045 -31.81890 -29.98562 -27.33710 -26.64259 -26.21338 -23.80447 -22.56772 -20.98933 -19.22219 -18.66286 -17.35748 -17.18657 -16.90666 -16.41654 -16.07370 -15.64164 -15.30929 -14.82160 -14.62049 -14.38235 -13.79520 -13.53504 -13.34179 -13.07970 -12.94101 -12.84441 -12.68136 -12.32485 -12.23475 -12.21417 -12.07263 -11.45546 -11.20342 -11.07162 -10.93563 -10.61780 -10.26193 -9.61381 -9.48723 -8.16517 -6.33823 1.44211 1.44857 1.57502 2.04887 2.38464 2.77912 3.13667 3.54928 3.67740 3.81980 3.99534 4.17584 4.19464 4.39455 4.55727 4.70384 4.77556 4.85732 4.91342 4.92541 4.94064 5.02825 5.08213 5.12780 5.16785 5.33686 5.45435 5.52193 5.61369 5.67230 5.74747 5.97338 6.14026 6.29835 6.71818 6.75869 7.12270 7.34983 7.73487 8.90031 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042138 B = 0.005369 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.323303 B = 5213.534590 C = 5441.828771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.272 3.728 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.071 0.929 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.283 1.283 12 N -0.714 5.714 13 C 0.501 3.499 14 O -0.592 6.592 15 C -0.108 4.108 16 C -0.062 4.062 17 C 0.087 3.913 18 N -0.851 5.851 19 C -0.115 4.115 20 C -0.133 4.133 21 C -0.134 4.134 22 H 0.010 0.990 23 H 0.064 0.936 24 H 0.038 0.962 25 H 0.265 0.735 26 H 0.401 0.599 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.346 0.654 32 H 0.348 0.652 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 -5.296 16.933 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.089 0.911 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.364 5.364 13 C 0.289 3.711 14 O -0.474 6.474 15 C -0.148 4.148 16 C -0.062 4.062 17 C -0.044 4.044 18 N -0.382 5.382 19 C -0.153 4.153 20 C -0.170 4.170 21 C -0.172 4.172 22 H 0.029 0.971 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.235 0.765 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.352 -4.723 16.197 17.424 hybrid contribution 0.285 0.376 -0.487 0.678 sum 4.637 -4.347 15.710 16.947 Atomic orbital electron populations 1.21872 0.98543 0.99221 0.99324 1.18248 0.90893 0.91714 0.82335 0.98884 1.21604 1.32297 1.13405 0.90975 0.91072 1.25829 0.94907 0.95613 1.02401 1.70070 1.37198 1.24099 1.24458 0.85280 0.78098 0.78517 0.78326 1.18356 1.20349 1.20941 1.46337 1.65904 1.14086 1.10028 1.21413 0.76890 0.87278 0.85526 1.90568 1.52705 1.18188 1.85895 1.21576 1.03740 0.98670 0.90832 1.21559 0.95532 0.95321 0.93839 1.21460 0.88740 0.95077 0.99091 1.58514 1.03187 1.27806 1.48675 1.22991 0.99732 0.99015 0.93529 1.22843 0.99099 0.99857 0.95211 1.22901 0.96338 1.00690 0.97251 0.97064 0.91745 0.94254 0.92622 0.76456 0.87323 0.87896 0.93006 0.94820 0.84137 0.83848 0.88615 0.90224 0.90207 0.90220 0.93931 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 2 C 0.27 14.66 2.56 44.25 0.11 14.78 16 3 H -0.01 -0.43 7.58 -2.39 -0.02 -0.45 16 4 C -0.54 -29.80 8.73 25.60 0.22 -29.57 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.91 16 8 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 9 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 N -0.71 -30.97 5.07 -446.09 -2.26 -33.23 16 13 C 0.50 20.43 7.45 87.65 0.65 21.08 16 14 O -0.59 -28.97 13.17 -3.06 -0.04 -29.01 16 15 C -0.11 -3.07 5.00 29.85 0.15 -2.92 16 16 C -0.06 -1.57 0.46 -51.66 -0.02 -1.59 16 17 C 0.09 2.38 5.77 86.30 0.50 2.88 16 18 N -0.85 -19.43 8.79 -186.72 -1.64 -21.07 16 19 C -0.12 -2.01 7.14 31.18 0.22 -1.79 16 20 C -0.13 -2.51 7.74 31.18 0.24 -2.27 16 21 C -0.13 -3.61 6.20 31.12 0.19 -3.41 16 22 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.06 3.70 6.07 -2.38 -0.01 3.68 16 24 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.40 14.82 8.54 -92.71 -0.79 14.02 16 27 H 0.11 2.89 7.54 -2.39 -0.02 2.87 16 28 H 0.10 2.39 8.06 -2.38 -0.02 2.37 16 29 H 0.05 1.92 6.26 -2.38 -0.01 1.90 16 30 H 0.03 0.81 7.32 -2.39 -0.02 0.79 16 31 H 0.35 7.22 9.08 -89.69 -0.81 6.41 16 32 H 0.35 5.96 8.45 -89.70 -0.76 5.20 16 33 H 0.10 1.44 8.04 -2.39 -0.02 1.42 16 34 H 0.08 1.14 7.60 -2.38 -0.02 1.12 16 35 H 0.08 1.44 7.61 -2.39 -0.02 1.42 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.04 1.37 8.09 -2.38 -0.02 1.36 16 38 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 Total: -1.00 -68.40 303.62 0.42 -67.98 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -1.29 Total: 32.18 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 3.39 Total: -7.91 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -3.66 Total: -108.22 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.04 Total: -29.01 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -68.40 0.42 -67.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088050976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.748 kcal (2) G-P(sol) polarization free energy of solvation -68.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds