Wall clock time and date at job start Mon Mar 30 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47312 * 2 1 4 4 C 1.50697 * 109.47461 * 120.00604 * 2 1 3 5 5 H 1.08006 * 120.00032 * 95.08992 * 4 2 1 6 6 C 1.37873 * 120.00023 * 275.08760 * 4 2 1 7 7 N 1.31513 * 120.00218 * 355.05921 * 6 4 2 8 8 Si 1.86799 * 119.99928 * 175.05671 * 6 4 2 9 9 H 1.48494 * 109.47272 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47274 * 120.00555 * 8 6 4 11 11 H 1.48501 * 109.46953 * 239.99930 * 8 6 4 12 12 N 1.46503 * 109.46964 * 240.00536 * 2 1 3 13 13 C 1.46501 * 120.00116 * 300.00027 * 12 2 1 14 14 C 1.34777 * 119.99861 * 119.99899 * 12 2 1 15 15 O 1.21584 * 120.00508 * 16.57970 * 14 12 2 16 16 N 1.34778 * 119.99802 * 196.58447 * 14 12 2 17 17 C 1.46923 * 120.63241 * 23.75290 * 16 14 12 18 18 C 1.53633 * 108.54468 * 126.36980 * 17 16 14 19 19 C 1.53042 * 109.23826 * 54.85602 * 18 17 16 20 20 C 1.53042 * 109.54005 * 298.51064 * 19 18 17 21 21 C 1.46929 * 120.63197 * 204.03401 * 16 14 12 22 22 H 1.08999 * 109.47031 * 175.03722 * 1 2 3 23 23 H 1.09000 * 109.46591 * 295.03218 * 1 2 3 24 24 H 1.08997 * 109.47037 * 55.03010 * 1 2 3 25 25 H 0.97004 * 119.99464 * 5.06246 * 7 6 4 26 26 H 1.08997 * 109.47130 * 95.16197 * 13 12 2 27 27 H 1.09003 * 109.46797 * 215.16085 * 13 12 2 28 28 H 1.08997 * 109.46833 * 335.15859 * 13 12 2 29 29 H 1.08998 * 109.58567 * 246.20295 * 17 16 14 30 30 H 1.08998 * 109.58946 * 6.63017 * 17 16 14 31 31 H 1.08995 * 109.62863 * 294.86810 * 18 17 16 32 32 H 1.08993 * 109.42747 * 174.72592 * 18 17 16 33 33 H 1.09000 * 109.45564 * 178.49018 * 19 18 17 34 34 H 1.09000 * 109.46187 * 58.53643 * 19 18 17 35 35 H 1.08994 * 109.49770 * 301.41907 * 20 19 18 36 36 H 1.09000 * 109.49647 * 181.31948 * 20 19 18 37 37 H 1.09000 * 109.58517 * 353.37399 * 21 16 14 38 38 H 1.08999 * 109.58902 * 113.79714 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.2907 -1.7581 1.1814 6 6 2.1624 -0.0233 2.4185 7 7 1.9415 1.2726 2.4562 8 14 2.6523 -0.9329 3.9748 9 1 2.8422 -2.3732 3.6674 10 1 3.9211 -0.3677 4.4999 11 1 1.5834 -0.7806 4.9943 12 7 2.0183 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4283 14 6 2.7931 -0.0354 -2.0834 15 8 3.3345 1.0058 -1.7654 16 7 2.9677 -0.5344 -3.3231 17 6 1.9770 -1.4476 -3.9090 18 6 1.5444 -0.8892 -5.2733 19 6 2.7839 -0.6656 -6.1426 20 6 3.7014 0.3594 -5.4720 21 6 4.1556 -0.1805 -4.1122 22 1 -0.3633 -1.0238 -0.0889 23 1 -0.3632 0.4348 0.9312 24 1 -0.3633 0.5890 -0.8421 25 1 1.6163 1.7323 1.6663 26 1 0.7894 -2.1446 -2.0762 27 1 2.5004 -2.6046 -1.9053 28 1 1.4401 -2.5734 -0.4759 29 1 2.4215 -2.4342 -4.0392 30 1 1.1112 -1.5186 -3.2506 31 1 1.0230 0.0576 -5.1328 32 1 0.8805 -1.6016 -5.7626 33 1 2.4790 -0.2946 -7.1211 34 1 3.3184 -1.6080 -6.2622 35 1 3.1596 1.2944 -5.3296 36 1 4.5726 0.5356 -6.1029 37 1 4.7278 0.5848 -3.5878 38 1 4.7741 -1.0659 -4.2587 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091969240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:21 Heat of formation + Delta-G solvation = -17.994246 kcal Electronic energy + Delta-G solvation = -18417.053650 eV Core-core repulsion = 15681.052103 eV Total energy + Delta-G solvation = -2736.001547 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.01802 -37.24716 -35.47638 -33.38578 -32.06015 -30.92173 -29.09942 -26.71882 -24.88297 -24.40131 -23.10563 -21.46825 -20.15592 -18.84043 -16.84356 -16.68095 -15.84653 -15.25040 -14.69041 -14.37526 -13.93803 -13.75495 -13.65509 -13.08598 -12.95739 -12.84725 -12.39660 -12.18025 -11.54248 -11.41245 -11.37261 -11.14190 -11.03673 -10.86451 -10.70708 -10.50548 -10.28017 -10.12947 -10.02195 -9.20426 -8.83040 -8.33305 -8.20578 -7.41194 -6.35108 -4.08091 3.24878 3.44109 3.48734 3.60846 3.74894 4.48192 4.55049 4.78710 4.89268 4.90648 5.17947 5.34911 5.39779 5.45512 5.55660 5.68884 5.75085 5.79952 5.88723 5.93820 6.04861 6.06755 6.11241 6.30984 6.35591 6.42949 6.52639 6.71950 6.90117 7.13680 7.16818 7.62411 7.77400 8.10610 8.45047 8.71156 8.84859 9.34185 9.64526 11.02485 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041433 B = 0.006384 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.632631 B = 4384.576752 C = 4534.481581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.254 3.746 3 H 0.063 0.937 4 C -0.601 4.601 5 H 0.053 0.947 6 C 0.024 3.976 7 N -0.906 5.906 8 Si 1.076 2.924 9 H -0.290 1.290 10 H -0.287 1.287 11 H -0.287 1.287 12 N -0.609 5.609 13 C 0.086 3.914 14 C 0.705 3.295 15 O -0.587 6.587 16 N -0.642 5.642 17 C 0.097 3.903 18 C -0.135 4.135 19 C -0.116 4.116 20 C -0.133 4.133 21 C 0.132 3.868 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.019 0.981 25 H 0.272 0.728 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -7.374 -15.012 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.153 3.847 3 H 0.080 0.920 4 C -0.640 4.640 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.542 5.542 8 Si 0.904 3.096 9 H -0.216 1.216 10 H -0.213 1.213 11 H -0.213 1.213 12 N -0.344 5.344 13 C -0.057 4.057 14 C 0.408 3.592 15 O -0.464 6.464 16 N -0.383 5.383 17 C -0.026 4.026 18 C -0.174 4.174 19 C -0.154 4.154 20 C -0.172 4.172 21 C 0.008 3.992 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.199 -6.559 -13.173 14.717 hybrid contribution -0.429 -0.428 -1.765 1.866 sum -0.628 -6.988 -14.937 16.503 Atomic orbital electron populations 1.22213 0.99274 0.99421 0.99494 1.18966 0.89477 0.94961 0.81267 0.91951 1.22108 1.48945 0.98152 0.94818 0.92851 1.25803 0.94632 0.95965 1.01749 1.70704 1.41745 1.08082 1.33647 0.83455 0.76778 0.74427 0.74896 1.21614 1.21324 1.21323 1.47544 1.53135 1.10829 1.22903 1.21863 0.98276 0.83772 1.01795 1.16061 0.80037 0.83157 0.79898 1.90844 1.52299 1.24454 1.78773 1.47219 1.24363 1.52093 1.14613 1.22323 0.93298 0.92181 0.94817 1.22017 0.97676 1.01679 0.95999 1.21482 0.96443 0.99268 0.98214 1.21906 0.99655 0.99224 0.96403 1.21316 0.86898 0.99837 0.91100 0.94110 0.92285 0.96191 0.91617 0.93827 0.92953 0.90465 0.92468 0.88076 0.91686 0.91309 0.92220 0.92078 0.91525 0.91310 0.89446 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.25 37.16 0.34 -2.95 16 2 C 0.25 6.60 2.33 -69.08 -0.16 6.43 16 3 H 0.06 1.88 5.54 -51.93 -0.29 1.59 16 4 C -0.60 -16.79 8.10 -34.44 -0.28 -17.07 16 5 H 0.05 1.47 6.74 -52.48 -0.35 1.12 16 6 C 0.02 0.69 5.45 -17.82 -0.10 0.59 16 7 N -0.91 -27.81 13.63 55.43 0.76 -27.06 16 8 Si 1.08 25.42 29.91 -169.99 -5.08 20.34 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.61 -13.61 2.65 -181.01 -0.48 -14.09 16 13 C 0.09 1.51 7.57 59.85 0.45 1.96 16 14 C 0.71 15.96 7.74 -86.92 -0.67 15.29 16 15 O -0.59 -15.94 15.46 5.29 0.08 -15.86 16 16 N -0.64 -11.03 2.81 -178.23 -0.50 -11.53 16 17 C 0.10 1.28 4.58 -3.48 -0.02 1.26 16 18 C -0.14 -1.50 6.10 -26.38 -0.16 -1.66 16 19 C -0.12 -1.18 5.88 -26.69 -0.16 -1.34 16 20 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 21 C 0.13 1.95 6.42 -3.71 -0.02 1.93 16 22 H 0.04 0.84 7.51 -51.93 -0.39 0.45 16 23 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.27 8.45 6.65 -40.82 -0.27 8.17 16 26 H 0.04 0.64 5.75 -51.93 -0.30 0.34 16 27 H 0.05 0.82 6.87 -51.93 -0.36 0.47 16 28 H 0.08 1.43 6.71 -51.93 -0.35 1.08 16 29 H 0.06 0.66 7.83 -51.93 -0.41 0.25 16 30 H 0.10 1.40 4.18 -51.93 -0.22 1.18 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.49 7.17 -51.93 -0.37 1.12 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 293.52 15.07 4.42 4.42 Total: -1.00 -33.46 293.52 -7.64 -41.10 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.90 Total: -0.04 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.93 Total: 2.71 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.23 Total: -52.68 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.08 Total: -15.86 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.46 -7.64 -41.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091969240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.109 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds