Wall clock time and date at job start Mon Mar 30 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47312 * 2 1 4 4 C 1.50697 * 109.47461 * 120.00604 * 2 1 3 5 5 H 1.08006 * 120.00032 * 95.08992 * 4 2 1 6 6 C 1.37873 * 120.00023 * 275.08760 * 4 2 1 7 7 N 1.31513 * 120.00218 * 355.05921 * 6 4 2 8 8 Si 1.86799 * 119.99928 * 175.05671 * 6 4 2 9 9 H 1.48494 * 109.47272 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47274 * 120.00555 * 8 6 4 11 11 H 1.48501 * 109.46953 * 239.99930 * 8 6 4 12 12 N 1.46503 * 109.46964 * 240.00536 * 2 1 3 13 13 C 1.46501 * 120.00116 * 300.00027 * 12 2 1 14 14 C 1.34777 * 119.99861 * 119.99899 * 12 2 1 15 15 O 1.21584 * 120.00508 * 16.57970 * 14 12 2 16 16 N 1.34778 * 119.99802 * 196.58447 * 14 12 2 17 17 C 1.46923 * 120.63241 * 23.75290 * 16 14 12 18 18 C 1.53633 * 108.54468 * 126.36980 * 17 16 14 19 19 C 1.53042 * 109.23826 * 54.85602 * 18 17 16 20 20 C 1.53042 * 109.54005 * 298.51064 * 19 18 17 21 21 C 1.46929 * 120.63197 * 204.03401 * 16 14 12 22 22 H 1.08999 * 109.47031 * 175.03722 * 1 2 3 23 23 H 1.09000 * 109.46591 * 295.03218 * 1 2 3 24 24 H 1.08997 * 109.47037 * 55.03010 * 1 2 3 25 25 H 0.97004 * 119.99464 * 5.06246 * 7 6 4 26 26 H 1.08997 * 109.47130 * 95.16197 * 13 12 2 27 27 H 1.09003 * 109.46797 * 215.16085 * 13 12 2 28 28 H 1.08997 * 109.46833 * 335.15859 * 13 12 2 29 29 H 1.08998 * 109.58567 * 246.20295 * 17 16 14 30 30 H 1.08998 * 109.58946 * 6.63017 * 17 16 14 31 31 H 1.08995 * 109.62863 * 294.86810 * 18 17 16 32 32 H 1.08993 * 109.42747 * 174.72592 * 18 17 16 33 33 H 1.09000 * 109.45564 * 178.49018 * 19 18 17 34 34 H 1.09000 * 109.46187 * 58.53643 * 19 18 17 35 35 H 1.08994 * 109.49770 * 301.41907 * 20 19 18 36 36 H 1.09000 * 109.49647 * 181.31948 * 20 19 18 37 37 H 1.09000 * 109.58517 * 353.37399 * 21 16 14 38 38 H 1.08999 * 109.58902 * 113.79714 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.2907 -1.7581 1.1814 6 6 2.1624 -0.0233 2.4185 7 7 1.9415 1.2726 2.4562 8 14 2.6523 -0.9329 3.9748 9 1 2.8422 -2.3732 3.6674 10 1 3.9211 -0.3677 4.4999 11 1 1.5834 -0.7806 4.9943 12 7 2.0183 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4283 14 6 2.7931 -0.0354 -2.0834 15 8 3.3345 1.0058 -1.7654 16 7 2.9677 -0.5344 -3.3231 17 6 1.9770 -1.4476 -3.9090 18 6 1.5444 -0.8892 -5.2733 19 6 2.7839 -0.6656 -6.1426 20 6 3.7014 0.3594 -5.4720 21 6 4.1556 -0.1805 -4.1122 22 1 -0.3633 -1.0238 -0.0889 23 1 -0.3632 0.4348 0.9312 24 1 -0.3633 0.5890 -0.8421 25 1 1.6163 1.7323 1.6663 26 1 0.7894 -2.1446 -2.0762 27 1 2.5004 -2.6046 -1.9053 28 1 1.4401 -2.5734 -0.4759 29 1 2.4215 -2.4342 -4.0392 30 1 1.1112 -1.5186 -3.2506 31 1 1.0230 0.0576 -5.1328 32 1 0.8805 -1.6016 -5.7626 33 1 2.4790 -0.2946 -7.1211 34 1 3.3184 -1.6080 -6.2622 35 1 3.1596 1.2944 -5.3296 36 1 4.5726 0.5356 -6.1029 37 1 4.7278 0.5848 -3.5878 38 1 4.7741 -1.0659 -4.2587 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091969240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:21 Heat of formation + Delta-G solvation = -39.805598 kcal Electronic energy + Delta-G solvation = -18417.999461 eV Core-core repulsion = 15681.052103 eV Total energy + Delta-G solvation = -2736.947358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55407 -38.60476 -37.33660 -35.19088 -33.53113 -32.11064 -30.86753 -28.19802 -26.92298 -25.80868 -24.18617 -23.12144 -21.49719 -20.32860 -18.84314 -18.21963 -17.50293 -16.76263 -15.89027 -15.78780 -15.57756 -15.17724 -14.95012 -14.56335 -14.45360 -14.25244 -13.88804 -13.56858 -13.38186 -13.18207 -12.99544 -12.61887 -12.59233 -12.19083 -12.06126 -11.91106 -11.78149 -11.52018 -11.42176 -10.91660 -10.88177 -10.52213 -9.68659 -9.10583 -8.62173 -6.36594 1.52334 1.61737 1.75765 1.79250 2.05155 2.57671 2.98321 3.23015 3.81148 3.93635 3.99918 4.17114 4.30128 4.32772 4.39333 4.46542 4.59376 4.63963 4.69454 4.74441 4.85821 4.92123 4.96041 4.99752 5.02726 5.13709 5.18010 5.23376 5.27727 5.46029 5.69336 5.84582 5.88725 6.06736 6.31824 6.53838 7.07784 7.43904 7.63454 8.73642 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041433 B = 0.006384 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.632631 B = 4384.576752 C = 4534.481581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.255 3.745 3 H 0.009 0.991 4 C -0.604 4.604 5 H 0.058 0.942 6 C -0.032 4.032 7 N -0.937 5.937 8 Si 1.124 2.876 9 H -0.266 1.266 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.616 5.616 13 C 0.084 3.916 14 C 0.694 3.306 15 O -0.649 6.649 16 N -0.635 5.635 17 C 0.090 3.910 18 C -0.132 4.132 19 C -0.112 4.112 20 C -0.128 4.128 21 C 0.125 3.875 22 H 0.066 0.934 23 H 0.038 0.962 24 H 0.032 0.968 25 H 0.255 0.745 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -10.499 -16.961 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.152 3.848 3 H 0.027 0.973 4 C -0.643 4.643 5 H 0.076 0.924 6 C -0.230 4.230 7 N -0.574 5.574 8 Si 0.946 3.054 9 H -0.190 1.190 10 H -0.216 1.216 11 H -0.200 1.200 12 N -0.351 5.351 13 C -0.057 4.057 14 C 0.398 3.602 15 O -0.532 6.532 16 N -0.374 5.374 17 C -0.031 4.031 18 C -0.170 4.170 19 C -0.149 4.149 20 C -0.166 4.166 21 C 0.002 3.998 22 H 0.085 0.915 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.670 -9.753 -15.201 18.073 hybrid contribution -0.262 0.525 -1.287 1.414 sum -0.932 -9.227 -16.488 18.917 Atomic orbital electron populations 1.21963 0.96735 1.01049 0.98956 1.18689 0.91275 0.92423 0.82462 0.97343 1.22435 1.47998 0.98301 0.95558 0.92417 1.27344 0.94255 0.95887 1.05501 1.70836 1.44250 1.09412 1.32912 0.82862 0.76564 0.74464 0.71547 1.19018 1.21556 1.20009 1.47403 1.53181 1.12656 1.21898 1.22131 1.00666 0.80648 1.02285 1.16382 0.79503 0.82796 0.81561 1.90796 1.54813 1.27252 1.80292 1.47271 1.25569 1.51875 1.12681 1.22625 0.92234 0.92739 0.95549 1.22016 0.98563 1.01392 0.95008 1.21490 0.95515 0.99445 0.98442 1.21875 1.00929 0.98690 0.95094 1.21536 0.86232 1.00190 0.91803 0.91466 0.94318 0.94932 0.93497 0.90059 0.90956 0.91510 0.89430 0.88720 0.93814 0.88060 0.90328 0.90079 0.93984 0.88850 0.93009 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 9.25 71.98 0.67 -5.19 16 2 C 0.25 13.60 2.33 44.24 0.10 13.70 16 3 H 0.01 0.55 5.54 -2.39 -0.01 0.54 16 4 C -0.60 -34.22 8.10 25.60 0.21 -34.01 16 5 H 0.06 3.15 6.74 -2.91 -0.02 3.13 16 6 C -0.03 -1.85 5.45 84.65 0.46 -1.39 16 7 N -0.94 -59.88 13.63 21.45 0.29 -59.59 16 8 Si 1.12 51.19 29.91 68.60 2.05 53.24 16 9 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 N -0.62 -27.64 2.65 -844.84 -2.24 -29.88 16 13 C 0.08 2.73 7.57 127.77 0.97 3.70 16 14 C 0.69 32.18 7.74 179.05 1.39 33.56 16 15 O -0.65 -37.57 15.46 -3.98 -0.06 -37.64 16 16 N -0.63 -21.16 2.81 -836.06 -2.35 -23.51 16 17 C 0.09 2.06 4.58 86.51 0.40 2.45 16 18 C -0.13 -2.42 6.10 30.82 0.19 -2.23 16 19 C -0.11 -1.79 5.88 30.62 0.18 -1.61 16 20 C -0.13 -2.76 6.08 30.67 0.19 -2.58 16 21 C 0.13 3.58 6.42 86.36 0.55 4.14 16 22 H 0.07 2.66 7.51 -2.39 -0.02 2.65 16 23 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.25 16.84 6.65 -92.71 -0.62 16.22 16 26 H 0.08 2.05 5.75 -2.39 -0.01 2.04 16 27 H 0.07 2.04 6.87 -2.39 -0.02 2.03 16 28 H 0.07 2.31 6.71 -2.39 -0.02 2.30 16 29 H 0.09 1.55 7.83 -2.39 -0.02 1.54 16 30 H 0.09 2.29 4.18 -2.39 -0.01 2.28 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.84 7.17 -2.39 -0.02 1.83 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -78.32 293.52 4.17 -74.15 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.19 Total: 12.68 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 5.30 Total: 10.54 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -4.30 Total: -112.97 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.06 Total: -37.64 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Total: -78.32 4.17 -74.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091969240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.346 kcal (2) G-P(sol) polarization free energy of solvation -78.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds