Wall clock time and date at job start Mon Mar 30 2020 04:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47205 * 2 1 4 4 C 1.37196 * 120.00187 * 94.54709 * 3 2 1 5 5 H 1.08005 * 120.00180 * 227.37022 * 4 3 2 6 6 C 1.38873 * 119.99891 * 47.36697 * 4 3 2 7 7 N 1.31475 * 120.00230 * 203.68273 * 6 4 3 8 8 Si 1.86806 * 119.99954 * 23.41005 * 6 4 3 9 9 H 1.48496 * 109.47429 * 84.88742 * 8 6 4 10 10 H 1.48501 * 109.47009 * 204.88924 * 8 6 4 11 11 H 1.48504 * 109.47031 * 324.88361 * 8 6 4 12 12 C 1.34778 * 120.00286 * 274.54828 * 3 2 1 13 13 O 1.21579 * 119.99421 * 11.06969 * 12 3 2 14 14 N 1.34774 * 120.00416 * 191.06479 * 12 3 2 15 15 C 1.46928 * 120.62760 * 16.08801 * 14 12 3 16 16 C 1.53617 * 108.54230 * 126.36776 * 15 14 12 17 17 C 1.53042 * 109.24686 * 54.85522 * 16 15 14 18 18 C 1.53000 * 109.45324 * 178.49943 * 17 16 15 19 19 C 1.53047 * 109.53339 * 298.51088 * 17 16 15 20 20 C 1.46921 * 120.63022 * 196.36417 * 14 12 3 21 21 H 1.08998 * 109.47268 * 65.13051 * 1 2 3 22 22 H 1.09006 * 109.47209 * 185.13506 * 1 2 3 23 23 H 1.09005 * 109.46979 * 305.12864 * 1 2 3 24 24 H 1.09000 * 109.47034 * 239.99694 * 2 1 3 25 25 H 1.09004 * 109.47228 * 119.99807 * 2 1 3 26 26 H 0.97004 * 120.00234 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.58310 * 246.19880 * 15 14 12 28 28 H 1.09001 * 109.58593 * 6.62015 * 15 14 12 29 29 H 1.09001 * 109.63562 * 294.86329 * 16 15 14 30 30 H 1.08998 * 109.43266 * 174.72247 * 16 15 14 31 31 H 1.08996 * 109.45716 * 58.52802 * 17 16 15 32 32 H 1.09001 * 109.46925 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.46498 * 300.05724 * 18 17 16 34 34 H 1.08997 * 109.46846 * 60.05517 * 18 17 16 35 35 H 1.08999 * 109.49829 * 301.41246 * 19 17 16 36 36 H 1.08998 * 109.49307 * 181.31337 * 19 17 16 37 37 H 1.08999 * 109.59077 * 353.37428 * 20 14 12 38 38 H 1.09007 * 109.58495 * 113.66117 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3358 1.9965 1.1844 5 1 1.9732 2.9930 1.3894 6 6 3.1233 1.3381 2.1197 7 7 3.0577 1.6756 3.3887 8 14 4.2704 -0.0324 1.5759 9 1 5.5547 0.5516 1.1126 10 1 4.5257 -0.9466 2.7179 11 1 3.6425 -0.7917 0.4648 12 6 2.1557 2.0474 -1.1635 13 8 1.6907 1.5850 -2.1873 14 7 2.8084 3.2262 -1.1921 15 6 3.6689 3.6327 -0.0727 16 6 5.0578 3.9844 -0.6268 17 6 4.9106 5.0427 -1.7225 18 6 6.2946 5.4239 -2.2519 19 6 4.0641 4.4803 -2.8668 20 6 2.6682 4.1318 -2.3405 21 1 -0.3634 0.4322 -0.9323 22 1 -0.3634 -1.0236 0.0920 23 1 -0.3633 0.5914 0.8405 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.6081 1.2159 4.0419 27 1 3.2383 4.5036 0.4215 28 1 3.7549 2.8116 0.6390 29 1 5.5226 3.0911 -1.0440 30 1 5.6801 4.3773 0.1771 31 1 4.4233 5.9264 -1.3106 32 1 6.1901 6.1780 -3.0320 33 1 6.8975 5.8245 -1.4370 34 1 6.7818 4.5403 -2.6642 35 1 4.5383 3.5823 -3.2628 36 1 3.9792 5.2262 -3.6571 37 1 2.0940 3.6401 -3.1258 38 1 2.1555 5.0416 -2.0280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091973367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:18 Heat of formation + Delta-G solvation = -30.272010 kcal Electronic energy + Delta-G solvation = -18809.112466 eV Core-core repulsion = 16072.578515 eV Total energy + Delta-G solvation = -2736.533951 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42059 -38.78410 -37.09221 -34.80604 -34.07202 -32.18643 -31.10081 -28.91345 -26.89157 -24.83685 -23.86750 -23.36387 -21.45201 -20.38751 -19.35646 -17.71496 -17.32056 -16.47122 -16.26954 -15.44896 -15.29914 -15.21066 -14.91173 -14.73391 -14.47623 -14.22913 -13.86470 -13.71311 -13.37082 -13.00242 -12.70592 -12.67094 -12.59139 -12.42442 -12.07537 -11.89372 -11.68672 -11.55292 -11.33059 -11.23238 -11.11389 -10.42955 -9.70366 -9.07676 -8.48105 -6.03232 1.27196 1.37287 1.45233 2.13486 2.22790 2.32931 2.87024 3.45960 3.90130 3.98083 4.02880 4.21597 4.32982 4.46218 4.50946 4.60918 4.61836 4.67399 4.83634 4.87707 4.89362 4.96963 5.01517 5.07501 5.14507 5.21315 5.25769 5.33262 5.41659 5.45893 5.56424 5.59734 5.98737 6.06906 6.36728 6.62781 7.03234 7.66651 8.04214 8.64179 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.010690 C = 0.008396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.060474 B = 2618.556780 C = 3334.176787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.123 3.877 3 N -0.507 5.507 4 C -0.314 4.314 5 H 0.068 0.932 6 C 0.038 3.962 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.248 1.248 12 C 0.678 3.322 13 O -0.659 6.659 14 N -0.624 5.624 15 C 0.081 3.919 16 C -0.126 4.126 17 C -0.089 4.089 18 C -0.139 4.139 19 C -0.116 4.116 20 C 0.124 3.876 21 H 0.042 0.958 22 H 0.082 0.918 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.280 0.720 27 H 0.043 0.957 28 H 0.131 0.869 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 4.305 -6.741 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.000 4.000 3 N -0.233 5.233 4 C -0.441 4.441 5 H 0.086 0.914 6 C -0.167 4.167 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.202 1.202 11 H -0.171 1.171 12 C 0.383 3.617 13 O -0.545 6.545 14 N -0.360 5.360 15 C -0.041 4.041 16 C -0.165 4.165 17 C -0.108 4.108 18 C -0.196 4.196 19 C -0.154 4.154 20 C 0.001 3.999 21 H 0.061 0.939 22 H 0.101 0.899 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.148 0.852 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.558 4.025 -7.040 9.303 hybrid contribution 0.395 -0.552 0.299 0.742 sum 4.953 3.474 -6.741 9.058 Atomic orbital electron populations 1.21956 0.95486 1.02209 1.00928 1.21580 0.95198 0.83005 1.00263 1.43056 1.63079 1.13392 1.03796 1.18390 1.30778 1.02768 0.92208 0.91444 1.25852 0.97464 0.98948 0.94448 1.69881 1.38145 1.43079 1.01302 0.86612 0.80791 0.80933 0.79331 1.19831 1.20215 1.17147 1.16415 0.79910 0.82019 0.83396 1.90682 1.59043 1.70473 1.34286 1.47035 1.48808 1.18753 1.21416 1.22956 0.88616 1.02861 0.89673 1.22104 0.96805 0.98644 0.98913 1.21124 0.97025 0.97601 0.95003 1.21773 0.95226 1.01286 1.01300 1.21894 0.94244 1.01005 0.98248 1.21492 0.98149 0.92300 0.87967 0.93920 0.89949 0.93408 0.92762 0.91425 0.91031 0.93888 0.85221 0.93770 0.90526 0.90653 0.91203 0.92122 0.93353 0.93229 0.88554 0.91341 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 10.19 71.98 0.73 -5.08 16 2 C 0.12 5.49 4.08 86.38 0.35 5.85 16 3 N -0.51 -24.86 1.96 -677.68 -1.33 -26.20 16 4 C -0.31 -16.05 6.00 84.01 0.50 -15.55 16 5 H 0.07 3.78 7.13 -2.91 -0.02 3.76 16 6 C 0.04 1.94 4.51 84.90 0.38 2.32 16 7 N -0.89 -47.19 13.96 21.65 0.30 -46.88 16 8 Si 0.90 39.67 26.27 68.60 1.80 41.48 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.25 -10.71 5.28 99.48 0.53 -10.18 16 12 C 0.68 33.46 7.92 179.05 1.42 34.88 16 13 O -0.66 -34.83 15.43 -3.97 -0.06 -34.89 16 14 N -0.62 -26.66 2.95 -836.08 -2.47 -29.13 16 15 C 0.08 3.27 4.78 86.51 0.41 3.69 16 16 C -0.13 -4.15 5.38 30.82 0.17 -3.99 16 17 C -0.09 -2.34 2.68 -10.76 -0.03 -2.37 16 18 C -0.14 -2.89 9.19 71.98 0.66 -2.23 16 19 C -0.12 -3.20 5.36 30.68 0.16 -3.04 16 20 C 0.12 4.30 6.44 86.36 0.56 4.86 16 21 H 0.04 1.76 7.93 -2.39 -0.02 1.74 16 22 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 23 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.05 2.42 7.69 -2.39 -0.02 2.40 16 25 H 0.07 2.96 4.94 -2.38 -0.01 2.94 16 26 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 27 H 0.04 1.74 8.01 -2.39 -0.02 1.72 16 28 H 0.13 6.12 3.23 -16.09 -0.05 6.06 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 2.57 7.06 -2.39 -0.02 2.55 16 38 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -59.78 290.45 4.37 -55.41 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.80 Total: 20.87 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 5.32 Total: 19.34 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.49 Total: -102.21 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.06 Total: -34.89 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 1.80 Total: 41.48 kcal Total: -59.78 4.37 -55.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091973367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.141 kcal (2) G-P(sol) polarization free energy of solvation -59.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds