Wall clock time and date at job start Mon Mar 30 2020 04:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46783 * 2 1 4 4 C 1.37192 * 119.99886 * 196.03227 * 3 2 1 5 5 H 1.07997 * 119.99981 * 212.02982 * 4 3 2 6 6 C 1.38877 * 119.99671 * 32.03614 * 4 3 2 7 7 N 1.31475 * 120.00385 * 23.33780 * 6 4 3 8 8 Si 1.86807 * 119.99882 * 203.33658 * 6 4 3 9 9 H 1.48495 * 109.46755 * 59.99841 * 8 6 4 10 10 H 1.48495 * 109.46997 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47076 * 300.00364 * 8 6 4 12 12 C 1.34784 * 120.00067 * 16.04011 * 3 2 1 13 13 O 1.21587 * 119.99734 * 226.03458 * 12 3 2 14 14 N 1.34774 * 119.99778 * 46.03082 * 12 3 2 15 15 C 1.46990 * 120.61846 * 343.25758 * 14 12 3 16 16 C 1.53193 * 108.73552 * 126.38903 * 15 14 12 17 17 C 1.53036 * 109.34079 * 54.62374 * 16 15 14 18 18 C 1.53044 * 109.53749 * 298.61515 * 17 16 15 19 19 H 1.09000 * 109.49913 * 301.41638 * 18 17 16 20 20 C 1.53002 * 109.49642 * 181.31659 * 18 17 16 21 21 C 1.46926 * 120.62367 * 163.23799 * 14 12 3 22 22 H 1.09006 * 109.46946 * 89.14957 * 1 2 3 23 23 H 1.09006 * 109.46976 * 209.14438 * 1 2 3 24 24 H 1.08993 * 109.47126 * 329.14605 * 1 2 3 25 25 H 1.08992 * 109.46935 * 240.00146 * 2 1 3 26 26 H 1.08993 * 109.46753 * 120.00076 * 2 1 3 27 27 H 0.96998 * 120.00088 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.62783 * 6.60212 * 15 14 12 29 29 H 1.08997 * 109.58163 * 246.14667 * 15 14 12 30 30 H 1.09005 * 109.49748 * 294.65388 * 16 15 14 31 31 H 1.09002 * 109.49766 * 174.59298 * 16 15 14 32 32 H 1.08996 * 109.46410 * 58.63990 * 17 16 15 33 33 H 1.09009 * 109.46067 * 178.61060 * 17 16 15 34 34 H 1.09000 * 109.47181 * 60.00191 * 20 18 17 35 35 H 1.09006 * 109.46939 * 180.02562 * 20 18 17 36 36 H 1.08995 * 109.47207 * 300.00001 * 20 18 17 37 37 H 1.09001 * 109.58708 * 113.84350 * 21 14 12 38 38 H 1.08998 * 109.70611 * 353.48651 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3236 1.6474 -0.3281 5 1 3.8361 2.4809 0.1289 6 6 3.9856 0.8450 -1.2482 7 7 3.2995 0.1512 -2.1293 8 14 5.8513 0.7515 -1.2339 9 1 6.3112 0.2422 0.0830 10 1 6.3091 -0.1673 -2.3069 11 1 6.4165 2.1050 -1.4659 12 6 1.1852 2.3905 0.3225 13 8 1.1543 3.3953 -0.3614 14 7 0.3866 2.2858 1.4031 15 6 0.1326 0.9772 2.0224 16 6 0.4672 1.0658 3.5147 17 6 -0.3162 2.2211 4.1420 18 6 0.0928 3.5374 3.4771 19 1 1.1650 3.6898 3.6009 20 6 -0.6668 4.6956 4.1274 21 6 -0.2462 3.4777 1.9843 22 1 -0.3633 0.0153 -1.0276 23 1 -0.3633 -0.8976 0.5005 24 1 -0.3633 0.8822 0.5270 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 3.7619 -0.4095 -2.7716 28 1 0.7607 0.2211 1.5513 29 1 -0.9173 0.7120 1.8984 30 1 1.5359 1.2414 3.6381 31 1 0.1931 0.1317 4.0050 32 1 -1.3839 2.0571 3.9966 33 1 -0.0984 2.2704 5.2090 34 1 -0.4275 4.7359 5.1900 35 1 -0.3755 5.6328 3.6532 36 1 -1.7387 4.5430 4.0018 37 1 -1.3270 3.4163 1.8572 38 1 0.1298 4.3724 1.4882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091973368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:24 Heat of formation + Delta-G solvation = 59.727860 kcal Electronic energy + Delta-G solvation = -18826.753634 eV Core-core repulsion = 16094.122370 eV Total energy + Delta-G solvation = -2732.631264 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43104 -37.15269 -35.49496 -33.70279 -31.50540 -31.28396 -29.84277 -26.39257 -25.39919 -23.77624 -22.51515 -21.60804 -20.05906 -18.55733 -17.24750 -16.28169 -15.63604 -14.94315 -14.70729 -14.43380 -14.13395 -13.52677 -13.46439 -13.37648 -12.72485 -12.28979 -12.09673 -11.87283 -11.70407 -11.34440 -11.18740 -11.03818 -10.96023 -10.86440 -10.56832 -10.34998 -10.30404 -10.08230 -9.68097 -9.39090 -8.95361 -8.80003 -7.84924 -7.20127 -6.07384 -3.72978 3.27277 3.32220 3.34123 3.72384 4.09793 4.35979 4.89036 5.02907 5.09582 5.21286 5.24728 5.34735 5.57553 5.65890 5.72780 5.75495 5.85072 5.92350 5.97512 6.04920 6.11108 6.14808 6.17585 6.26597 6.36553 6.42685 6.45556 6.63236 6.67284 7.00718 7.29704 7.43916 7.62576 7.94148 8.50676 8.85219 9.40122 9.62608 10.13095 10.91133 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.007708 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.810131 B = 3631.757551 C = 3811.491155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.104 3.896 3 N -0.502 5.502 4 C -0.281 4.281 5 H 0.081 0.919 6 C 0.026 3.974 7 N -0.872 5.872 8 Si 0.917 3.083 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.692 3.308 13 O -0.594 6.594 14 N -0.638 5.638 15 C 0.080 3.920 16 C -0.144 4.144 17 C -0.110 4.110 18 C -0.109 4.109 19 H 0.072 0.928 20 C -0.142 4.142 21 C 0.136 3.864 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.104 0.896 25 H 0.116 0.884 26 H 0.031 0.969 27 H 0.264 0.736 28 H 0.130 0.870 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 -0.435 11.696 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.019 4.019 3 N -0.230 5.230 4 C -0.409 4.409 5 H 0.099 0.901 6 C -0.177 4.177 7 N -0.511 5.511 8 Si 0.745 3.255 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.398 3.602 13 O -0.472 6.472 14 N -0.378 5.378 15 C -0.041 4.041 16 C -0.182 4.182 17 C -0.147 4.147 18 C -0.128 4.128 19 H 0.091 0.909 20 C -0.200 4.200 21 C 0.012 3.988 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.122 0.878 25 H 0.133 0.867 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.858 -0.006 11.112 13.058 hybrid contribution 0.817 -0.223 -0.007 0.847 sum -6.041 -0.230 11.105 12.644 Atomic orbital electron populations 1.23791 0.97880 1.03371 1.02427 1.21566 0.91356 0.86232 1.02713 1.42444 1.09168 1.02265 1.69136 1.19172 0.83925 1.15920 1.21924 0.90138 1.25269 0.99694 0.99110 0.93637 1.69860 1.35618 1.29874 1.15796 0.86147 0.83579 0.78204 0.77609 1.20239 1.21109 1.20068 1.16145 0.77454 0.85269 0.81318 1.90722 1.69285 1.35447 1.51750 1.47910 1.52399 1.06729 1.30807 1.23007 1.00983 0.88285 0.91859 1.22119 1.00918 0.97901 0.97259 1.21540 0.99734 0.94625 0.98828 1.21540 1.00774 0.94921 0.95589 0.90930 1.21753 1.00103 0.98038 1.00137 1.21305 0.96344 0.89417 0.91747 0.93672 0.92595 0.87824 0.86675 0.95172 0.92603 0.85336 0.92758 0.91623 0.91706 0.92325 0.92555 0.92794 0.92567 0.92773 0.93126 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.17 7.38 37.16 0.27 -3.90 16 2 C 0.10 2.39 5.40 -4.04 -0.02 2.37 16 3 N -0.50 -13.27 2.86 -126.89 -0.36 -13.63 16 4 C -0.28 -8.03 9.21 -14.92 -0.14 -8.17 16 5 H 0.08 2.33 7.93 -52.49 -0.42 1.91 16 6 C 0.03 0.71 5.05 -17.47 -0.09 0.62 16 7 N -0.87 -24.63 11.12 55.49 0.62 -24.01 16 8 Si 0.92 21.14 29.61 -169.99 -5.03 16.10 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.69 17.79 6.36 -86.91 -0.55 17.23 16 13 O -0.59 -17.58 16.43 5.29 0.09 -17.49 16 14 N -0.64 -12.78 2.40 -224.01 -0.54 -13.32 16 15 C 0.08 1.32 3.78 -3.67 -0.01 1.31 16 16 C -0.14 -2.00 6.08 -26.61 -0.16 -2.16 16 17 C -0.11 -1.36 5.17 -26.69 -0.14 -1.50 16 18 C -0.11 -1.50 2.87 -90.49 -0.26 -1.76 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 20 C -0.14 -1.57 9.20 37.16 0.34 -1.23 16 21 C 0.14 2.32 5.65 -3.71 -0.02 2.30 16 22 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 24 H 0.10 2.01 2.37 -105.30 -0.25 1.76 16 25 H 0.12 2.97 5.33 -51.93 -0.28 2.69 16 26 H 0.03 0.64 6.98 -51.93 -0.36 0.28 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.13 2.31 2.25 -71.04 -0.16 2.15 16 29 H 0.05 0.81 6.97 -51.93 -0.36 0.44 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.60 7.20 -51.93 -0.37 1.23 16 LS Contribution 286.58 15.07 4.32 4.32 Total: -1.00 -32.13 286.58 -7.67 -39.80 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.97 Total: 3.11 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.78 Total: 5.12 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.28 Total: -50.97 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.09 Total: -17.49 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.13 -7.67 -39.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091973368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.525 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds