Wall clock time and date at job start Mon Mar 30 2020 04:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46783 * 2 1 4 4 C 1.37192 * 119.99886 * 196.03227 * 3 2 1 5 5 H 1.07997 * 119.99981 * 212.02982 * 4 3 2 6 6 C 1.38877 * 119.99671 * 32.03614 * 4 3 2 7 7 N 1.31475 * 120.00385 * 23.33780 * 6 4 3 8 8 Si 1.86807 * 119.99882 * 203.33658 * 6 4 3 9 9 H 1.48495 * 109.46755 * 59.99841 * 8 6 4 10 10 H 1.48495 * 109.46997 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47076 * 300.00364 * 8 6 4 12 12 C 1.34784 * 120.00067 * 16.04011 * 3 2 1 13 13 O 1.21587 * 119.99734 * 226.03458 * 12 3 2 14 14 N 1.34774 * 119.99778 * 46.03082 * 12 3 2 15 15 C 1.46990 * 120.61846 * 343.25758 * 14 12 3 16 16 C 1.53193 * 108.73552 * 126.38903 * 15 14 12 17 17 C 1.53036 * 109.34079 * 54.62374 * 16 15 14 18 18 C 1.53044 * 109.53749 * 298.61515 * 17 16 15 19 19 H 1.09000 * 109.49913 * 301.41638 * 18 17 16 20 20 C 1.53002 * 109.49642 * 181.31659 * 18 17 16 21 21 C 1.46926 * 120.62367 * 163.23799 * 14 12 3 22 22 H 1.09006 * 109.46946 * 89.14957 * 1 2 3 23 23 H 1.09006 * 109.46976 * 209.14438 * 1 2 3 24 24 H 1.08993 * 109.47126 * 329.14605 * 1 2 3 25 25 H 1.08992 * 109.46935 * 240.00146 * 2 1 3 26 26 H 1.08993 * 109.46753 * 120.00076 * 2 1 3 27 27 H 0.96998 * 120.00088 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.62783 * 6.60212 * 15 14 12 29 29 H 1.08997 * 109.58163 * 246.14667 * 15 14 12 30 30 H 1.09005 * 109.49748 * 294.65388 * 16 15 14 31 31 H 1.09002 * 109.49766 * 174.59298 * 16 15 14 32 32 H 1.08996 * 109.46410 * 58.63990 * 17 16 15 33 33 H 1.09009 * 109.46067 * 178.61060 * 17 16 15 34 34 H 1.09000 * 109.47181 * 60.00191 * 20 18 17 35 35 H 1.09006 * 109.46939 * 180.02562 * 20 18 17 36 36 H 1.08995 * 109.47207 * 300.00001 * 20 18 17 37 37 H 1.09001 * 109.58708 * 113.84350 * 21 14 12 38 38 H 1.08998 * 109.70611 * 353.48651 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3236 1.6474 -0.3281 5 1 3.8361 2.4809 0.1289 6 6 3.9856 0.8450 -1.2482 7 7 3.2995 0.1512 -2.1293 8 14 5.8513 0.7515 -1.2339 9 1 6.3112 0.2422 0.0830 10 1 6.3091 -0.1673 -2.3069 11 1 6.4165 2.1050 -1.4659 12 6 1.1852 2.3905 0.3225 13 8 1.1543 3.3953 -0.3614 14 7 0.3866 2.2858 1.4031 15 6 0.1326 0.9772 2.0224 16 6 0.4672 1.0658 3.5147 17 6 -0.3162 2.2211 4.1420 18 6 0.0928 3.5374 3.4771 19 1 1.1650 3.6898 3.6009 20 6 -0.6668 4.6956 4.1274 21 6 -0.2462 3.4777 1.9843 22 1 -0.3633 0.0153 -1.0276 23 1 -0.3633 -0.8976 0.5005 24 1 -0.3633 0.8822 0.5270 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 3.7619 -0.4095 -2.7716 28 1 0.7607 0.2211 1.5513 29 1 -0.9173 0.7120 1.8984 30 1 1.5359 1.2414 3.6381 31 1 0.1931 0.1317 4.0050 32 1 -1.3839 2.0571 3.9966 33 1 -0.0984 2.2704 5.2090 34 1 -0.4275 4.7359 5.1900 35 1 -0.3755 5.6328 3.6532 36 1 -1.7387 4.5430 4.0018 37 1 -1.3270 3.4163 1.8572 38 1 0.1298 4.3724 1.4882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091973368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:23 Heat of formation + Delta-G solvation = 39.219280 kcal Electronic energy + Delta-G solvation = -18827.642953 eV Core-core repulsion = 16094.122370 eV Total energy + Delta-G solvation = -2733.520583 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.10010 -38.65362 -37.41295 -35.34631 -33.29873 -32.70429 -31.53266 -27.69615 -27.12996 -25.38841 -24.13614 -22.97876 -21.38462 -20.20259 -19.12830 -18.05878 -17.51425 -16.59254 -16.38729 -16.01847 -15.44162 -15.20323 -14.78286 -14.69553 -14.05773 -13.93719 -13.69755 -13.30577 -13.14428 -12.86284 -12.80453 -12.76368 -12.45881 -12.23938 -12.12499 -12.06809 -11.66577 -11.37813 -11.21154 -10.98578 -10.86054 -10.68567 -9.55650 -9.14903 -8.14378 -5.89795 1.42008 1.43126 1.53374 2.00957 2.20923 2.48005 3.09209 3.42815 3.85678 3.94373 3.96540 4.15226 4.30398 4.34959 4.39447 4.49959 4.58640 4.68284 4.76268 4.88361 4.91844 4.96277 4.97051 5.10897 5.15306 5.23895 5.32024 5.36511 5.37539 5.45092 5.55369 5.56160 5.85883 6.09471 6.46808 6.84896 7.36982 7.64921 8.11096 8.81011 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.007708 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.810131 B = 3631.757551 C = 3811.491155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.104 3.896 3 N -0.518 5.518 4 C -0.316 4.316 5 H 0.061 0.939 6 C -0.013 4.013 7 N -0.897 5.897 8 Si 0.987 3.013 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.683 3.317 13 O -0.651 6.651 14 N -0.631 5.631 15 C 0.072 3.928 16 C -0.138 4.138 17 C -0.104 4.104 18 C -0.103 4.103 19 H 0.047 0.953 20 C -0.136 4.136 21 C 0.130 3.870 22 H 0.023 0.977 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.268 0.732 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 -1.687 14.093 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.018 4.018 3 N -0.246 5.246 4 C -0.444 4.444 5 H 0.078 0.922 6 C -0.214 4.214 7 N -0.537 5.537 8 Si 0.811 3.189 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.389 3.611 13 O -0.534 6.534 14 N -0.370 5.370 15 C -0.047 4.047 16 C -0.177 4.177 17 C -0.141 4.141 18 C -0.123 4.123 19 H 0.066 0.934 20 C -0.194 4.194 21 C 0.007 3.993 22 H 0.042 0.958 23 H 0.121 0.879 24 H 0.123 0.877 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.916 -1.291 13.565 15.759 hybrid contribution 1.083 0.185 -0.757 1.334 sum -6.833 -1.106 12.808 14.559 Atomic orbital electron populations 1.23754 0.95028 1.05642 1.01721 1.21635 0.93833 0.84291 1.02075 1.42685 1.08668 1.03690 1.69577 1.19274 0.85471 1.16528 1.23168 0.92154 1.26132 1.04427 0.98172 0.92646 1.69987 1.37523 1.30091 1.16090 0.85103 0.77442 0.78033 0.78364 1.18735 1.20011 1.20381 1.16482 0.78018 0.84361 0.82221 1.90660 1.71416 1.37327 1.54005 1.47898 1.50820 1.09256 1.29072 1.23170 1.02292 0.85895 0.93386 1.22083 0.99862 1.00358 0.95362 1.21540 1.00511 0.92410 0.99684 1.21491 0.99826 0.97585 0.93365 0.93413 1.21712 1.00564 0.96303 1.00811 1.21554 0.97146 0.87065 0.93582 0.95791 0.87927 0.87729 0.89666 0.93280 0.92217 0.86890 0.89717 0.93943 0.88370 0.90306 0.90251 0.90892 0.93267 0.91144 0.90782 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.61 7.38 71.98 0.53 -7.08 16 2 C 0.10 4.81 5.40 86.38 0.47 5.28 16 3 N -0.52 -28.32 2.86 -673.62 -1.93 -30.25 16 4 C -0.32 -18.79 9.21 84.01 0.77 -18.01 16 5 H 0.06 3.71 7.93 -2.91 -0.02 3.68 16 6 C -0.01 -0.72 5.05 84.90 0.43 -0.29 16 7 N -0.90 -51.82 11.12 21.65 0.24 -51.58 16 8 Si 0.99 43.97 29.61 68.60 2.03 46.01 16 9 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.68 36.46 6.36 179.05 1.14 37.60 16 13 O -0.65 -40.76 16.43 -3.99 -0.07 -40.83 16 14 N -0.63 -25.26 2.40 -980.90 -2.36 -27.61 16 15 C 0.07 2.22 3.78 86.35 0.33 2.55 16 16 C -0.14 -3.39 6.08 30.67 0.19 -3.21 16 17 C -0.10 -2.15 5.17 30.62 0.16 -1.99 16 18 C -0.10 -2.67 2.87 -10.71 -0.03 -2.70 16 19 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 20 C -0.14 -2.63 9.20 71.98 0.66 -1.97 16 21 C 0.13 4.36 5.65 86.36 0.49 4.85 16 22 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.10 2.81 7.93 -2.38 -0.02 2.79 16 24 H 0.11 3.90 2.37 -52.54 -0.12 3.78 16 25 H 0.09 4.50 5.33 -2.39 -0.01 4.49 16 26 H 0.05 2.05 6.98 -2.39 -0.02 2.04 16 27 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.11 3.85 2.25 -20.34 -0.05 3.81 16 29 H 0.09 2.15 6.97 -2.39 -0.02 2.13 16 30 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 2.07 7.20 -2.39 -0.02 2.05 16 Total: -1.00 -74.32 286.58 3.93 -70.39 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.88 Total: 18.84 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 5.13 Total: 15.03 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -4.05 Total: -109.44 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.07 Total: -40.83 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.01 kcal Total: -74.32 3.93 -70.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091973368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.611 kcal (2) G-P(sol) polarization free energy of solvation -74.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds