Wall clock time and date at job start Mon Mar 30 2020 04:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47086 * 2 1 4 4 C 1.46501 * 119.99866 * 270.00022 * 3 2 1 5 5 C 1.34780 * 119.99739 * 90.00208 * 3 2 1 6 6 O 1.21579 * 119.99666 * 316.64424 * 5 3 2 7 7 N 1.34772 * 119.99866 * 136.64289 * 5 3 2 8 8 C 1.37193 * 119.99731 * 157.97818 * 7 5 3 9 9 H 1.07999 * 119.99898 * 118.79702 * 8 7 5 10 10 C 1.38874 * 120.00263 * 298.79209 * 8 7 5 11 11 N 1.31480 * 119.99902 * 347.47784 * 10 8 7 12 12 Si 1.86791 * 120.00244 * 167.47455 * 10 8 7 13 13 H 1.48502 * 109.47347 * 60.00203 * 12 10 8 14 14 H 1.48504 * 109.47498 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47278 * 300.00485 * 12 10 8 16 16 C 1.46501 * 119.99971 * 337.98424 * 7 5 3 17 17 C 1.54266 * 110.03331 * 124.13882 * 16 7 5 18 18 C 1.54970 * 104.16151 * 95.75180 * 17 16 7 19 19 C 1.54884 * 102.77755 * 37.88584 * 18 17 16 20 20 C 1.53875 * 110.02864 * 241.35077 * 16 7 5 21 21 H 1.08998 * 109.46724 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46784 * 299.99800 * 1 2 3 23 23 H 1.09000 * 109.47004 * 60.00093 * 1 2 3 24 24 H 1.09004 * 109.47067 * 239.99943 * 2 1 3 25 25 H 1.08995 * 109.47492 * 120.00425 * 2 1 3 26 26 H 1.09004 * 109.46971 * 220.04953 * 4 3 2 27 27 H 1.08995 * 109.47179 * 340.05505 * 4 3 2 28 28 H 1.08998 * 109.47179 * 100.05658 * 4 3 2 29 29 H 0.96997 * 120.00137 * 185.00149 * 11 10 8 30 30 H 1.08996 * 110.02085 * 2.73846 * 16 7 5 31 31 H 1.09004 * 110.48364 * 214.39710 * 17 16 7 32 32 H 1.08997 * 110.48762 * 337.03748 * 17 16 7 33 33 H 1.08999 * 110.71304 * 279.57144 * 18 17 16 34 34 H 1.08998 * 110.92215 * 156.29364 * 18 17 16 35 35 H 1.08994 * 110.48540 * 203.40379 * 19 18 17 36 36 H 1.09007 * 110.59930 * 80.81889 * 19 18 17 37 37 H 1.08998 * 110.03641 * 359.95297 * 20 16 7 38 38 H 1.09010 * 110.03214 * 121.38088 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 2.2430 2.0165 1.1673 6 8 1.4418 1.9189 2.0765 7 7 3.3558 2.7600 1.3265 8 6 3.3920 3.7448 2.2810 9 1 4.1118 3.6920 3.0844 10 6 2.5030 4.8096 2.2142 11 7 1.7995 5.0111 1.1218 12 14 2.3068 5.9557 3.6760 13 1 3.6113 6.5962 3.9816 14 1 1.3044 7.0028 3.3532 15 1 1.8483 5.1791 4.8558 16 6 4.5267 2.5166 0.4803 17 6 4.9350 3.8163 -0.2434 18 6 6.0474 4.4162 0.6534 19 6 6.8239 3.1607 1.1220 20 6 5.7269 2.1000 1.3485 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.1736 2.6650 -1.1901 27 1 2.3747 1.3375 -2.0664 28 1 1.4209 2.7269 -1.4937 29 1 1.2332 5.7950 1.0474 30 1 4.3048 1.7372 -0.2486 31 1 5.3248 3.5935 -1.2367 32 1 4.0876 4.4986 -0.3093 33 1 5.6147 4.9427 1.5041 34 1 6.6950 5.0790 0.0795 35 1 7.3545 3.3653 2.0519 36 1 7.5204 2.8306 0.3512 37 1 5.4385 2.0797 2.3994 38 1 6.0874 1.1183 1.0408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091973499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:12 Heat of formation + Delta-G solvation = -14.737344 kcal Electronic energy + Delta-G solvation = -19012.241846 eV Core-core repulsion = 16276.381529 eV Total energy + Delta-G solvation = -2735.860317 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.27149 -36.98788 -34.76218 -33.23818 -31.50484 -29.96903 -27.90175 -27.01577 -25.76398 -24.33277 -22.25758 -20.04677 -19.52955 -18.99968 -16.75865 -15.85877 -15.16757 -14.97318 -14.66577 -14.20450 -13.91027 -13.36926 -13.18694 -12.83066 -12.53618 -11.92924 -11.77004 -11.49421 -11.39296 -11.23460 -10.92227 -10.72236 -10.60463 -10.45613 -10.43486 -10.40150 -10.28195 -10.16422 -9.73971 -9.67266 -8.59780 -8.43236 -7.48350 -6.91179 -6.08679 -3.91185 3.31040 3.37846 3.43587 3.99849 4.38493 4.49816 5.24743 5.32021 5.39891 5.50341 5.56890 5.76581 5.81215 5.89275 5.98680 6.12768 6.18806 6.24923 6.30337 6.34582 6.41717 6.43980 6.50365 6.55170 6.65450 6.67282 6.78555 6.87145 7.05190 7.16229 7.35157 7.70455 7.82464 8.13269 8.59564 9.25834 9.44279 9.72712 10.44983 11.00103 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.012889 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.446993 B = 2171.942212 C = 3155.824459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 N -0.670 5.670 4 C 0.099 3.901 5 C 0.717 3.283 6 O -0.586 6.586 7 N -0.468 5.468 8 C -0.302 4.302 9 H 0.068 0.932 10 C 0.063 3.937 11 N -0.866 5.866 12 Si 0.909 3.091 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.134 3.866 17 C -0.126 4.126 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.129 4.129 21 H 0.047 0.953 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.263 0.737 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 -4.912 -5.668 9.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.019 3.981 3 N -0.413 5.413 4 C -0.044 4.044 5 C 0.423 3.577 6 O -0.462 6.462 7 N -0.195 5.195 8 C -0.431 4.431 9 H 0.085 0.915 10 C -0.143 4.143 11 N -0.502 5.502 12 Si 0.736 3.264 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.199 1.199 16 C 0.029 3.971 17 C -0.164 4.164 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.167 4.167 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.043 -4.847 -5.184 8.706 hybrid contribution -0.219 0.739 0.440 0.887 sum 4.824 -4.108 -4.744 7.916 Atomic orbital electron populations 1.22208 0.97341 1.00245 1.02770 1.20985 0.93791 0.82842 1.00499 1.46767 1.74883 1.14229 1.05402 1.21633 1.01818 0.96263 0.84720 1.16129 0.82973 0.77312 0.81307 1.90656 1.47703 1.64652 1.43232 1.42702 1.09099 1.33804 1.33848 1.18559 1.19885 1.00050 1.04593 0.91475 1.25517 0.95662 0.97080 0.96079 1.69800 1.27384 1.27183 1.25789 0.86331 0.77762 0.79475 0.82818 1.20193 1.21362 1.19904 1.21741 0.87842 0.95748 0.91818 1.22635 0.99448 0.98409 0.95933 1.22419 0.96236 0.96346 1.00122 1.22263 0.97107 0.96471 0.99686 1.22482 0.95535 0.96922 1.01797 0.93390 0.91404 0.93359 0.92387 0.92107 0.90783 0.93464 0.94283 0.92679 0.91554 0.93794 0.89145 0.90143 0.93626 0.92792 0.93050 0.90981 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 10.18 37.16 0.38 -2.46 16 2 C 0.14 2.53 6.18 -4.04 -0.02 2.50 16 3 N -0.67 -14.26 2.29 -187.35 -0.43 -14.68 16 4 C 0.10 1.85 9.76 59.85 0.58 2.44 16 5 C 0.72 18.67 6.35 -86.92 -0.55 18.12 16 6 O -0.59 -17.71 16.20 5.30 0.09 -17.62 16 7 N -0.47 -11.62 2.13 -111.85 -0.24 -11.86 16 8 C -0.30 -8.11 6.17 -14.92 -0.09 -8.21 16 9 H 0.07 1.81 7.37 -52.49 -0.39 1.42 16 10 C 0.06 1.74 5.16 -17.47 -0.09 1.65 16 11 N -0.87 -24.49 13.14 55.49 0.73 -23.76 16 12 Si 0.91 21.84 29.57 -169.99 -5.03 16.81 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 16 C 0.13 2.71 2.25 -66.81 -0.15 2.56 16 17 C -0.13 -2.41 4.72 -25.03 -0.12 -2.53 16 18 C -0.11 -2.03 6.56 -24.70 -0.16 -2.20 16 19 C -0.12 -1.89 6.83 -25.08 -0.17 -2.06 16 20 C -0.13 -2.34 6.29 -25.61 -0.16 -2.50 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 1.40 7.56 -51.93 -0.39 1.01 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.82 7.84 -51.93 -0.41 0.41 16 25 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 26 H 0.07 1.42 3.97 -51.93 -0.21 1.22 16 27 H 0.05 0.70 7.79 -51.93 -0.40 0.29 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.26 7.23 8.32 -40.82 -0.34 6.89 16 30 H 0.07 1.27 5.63 -51.93 -0.29 0.98 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 2.06 7.86 -51.93 -0.41 1.66 16 33 H 0.08 1.65 7.23 -51.93 -0.38 1.27 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.47 7.09 -51.93 -0.37 1.10 16 38 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 LS Contribution 298.94 15.07 4.50 4.50 Total: -1.00 -31.44 298.94 -7.11 -38.55 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.18 Total: 0.77 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.56 Total: 7.29 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.06 Total: -50.30 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.09 Total: -17.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.44 -7.11 -38.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091973499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.812 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds