Wall clock time and date at job start Mon Mar 30 2020 04:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47086 * 2 1 4 4 C 1.46501 * 119.99866 * 270.00022 * 3 2 1 5 5 C 1.34780 * 119.99739 * 90.00208 * 3 2 1 6 6 O 1.21579 * 119.99666 * 316.64424 * 5 3 2 7 7 N 1.34772 * 119.99866 * 136.64289 * 5 3 2 8 8 C 1.37193 * 119.99731 * 157.97818 * 7 5 3 9 9 H 1.07999 * 119.99898 * 118.79702 * 8 7 5 10 10 C 1.38874 * 120.00263 * 298.79209 * 8 7 5 11 11 N 1.31480 * 119.99902 * 347.47784 * 10 8 7 12 12 Si 1.86791 * 120.00244 * 167.47455 * 10 8 7 13 13 H 1.48502 * 109.47347 * 60.00203 * 12 10 8 14 14 H 1.48504 * 109.47498 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47278 * 300.00485 * 12 10 8 16 16 C 1.46501 * 119.99971 * 337.98424 * 7 5 3 17 17 C 1.54266 * 110.03331 * 124.13882 * 16 7 5 18 18 C 1.54970 * 104.16151 * 95.75180 * 17 16 7 19 19 C 1.54884 * 102.77755 * 37.88584 * 18 17 16 20 20 C 1.53875 * 110.02864 * 241.35077 * 16 7 5 21 21 H 1.08998 * 109.46724 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46784 * 299.99800 * 1 2 3 23 23 H 1.09000 * 109.47004 * 60.00093 * 1 2 3 24 24 H 1.09004 * 109.47067 * 239.99943 * 2 1 3 25 25 H 1.08995 * 109.47492 * 120.00425 * 2 1 3 26 26 H 1.09004 * 109.46971 * 220.04953 * 4 3 2 27 27 H 1.08995 * 109.47179 * 340.05505 * 4 3 2 28 28 H 1.08998 * 109.47179 * 100.05658 * 4 3 2 29 29 H 0.96997 * 120.00137 * 185.00149 * 11 10 8 30 30 H 1.08996 * 110.02085 * 2.73846 * 16 7 5 31 31 H 1.09004 * 110.48364 * 214.39710 * 17 16 7 32 32 H 1.08997 * 110.48762 * 337.03748 * 17 16 7 33 33 H 1.08999 * 110.71304 * 279.57144 * 18 17 16 34 34 H 1.08998 * 110.92215 * 156.29364 * 18 17 16 35 35 H 1.08994 * 110.48540 * 203.40379 * 19 18 17 36 36 H 1.09007 * 110.59930 * 80.81889 * 19 18 17 37 37 H 1.08998 * 110.03641 * 359.95297 * 20 16 7 38 38 H 1.09010 * 110.03214 * 121.38088 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 2.2430 2.0165 1.1673 6 8 1.4418 1.9189 2.0765 7 7 3.3558 2.7600 1.3265 8 6 3.3920 3.7448 2.2810 9 1 4.1118 3.6920 3.0844 10 6 2.5030 4.8096 2.2142 11 7 1.7995 5.0111 1.1218 12 14 2.3068 5.9557 3.6760 13 1 3.6113 6.5962 3.9816 14 1 1.3044 7.0028 3.3532 15 1 1.8483 5.1791 4.8558 16 6 4.5267 2.5166 0.4803 17 6 4.9350 3.8163 -0.2434 18 6 6.0474 4.4162 0.6534 19 6 6.8239 3.1607 1.1220 20 6 5.7269 2.1000 1.3485 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.1736 2.6650 -1.1901 27 1 2.3747 1.3375 -2.0664 28 1 1.4209 2.7269 -1.4937 29 1 1.2332 5.7950 1.0474 30 1 4.3048 1.7372 -0.2486 31 1 5.3248 3.5935 -1.2367 32 1 4.0876 4.4986 -0.3093 33 1 5.6147 4.9427 1.5041 34 1 6.6950 5.0790 0.0795 35 1 7.3545 3.3653 2.0519 36 1 7.5204 2.8306 0.3512 37 1 5.4385 2.0797 2.3994 38 1 6.0874 1.1183 1.0408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091973499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:11 Heat of formation + Delta-G solvation = -33.585197 kcal Electronic energy + Delta-G solvation = -19013.059151 eV Core-core repulsion = 16276.381529 eV Total energy + Delta-G solvation = -2736.677622 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06809 -38.61343 -36.52468 -35.16553 -33.40173 -31.52430 -29.36312 -28.64443 -27.49424 -26.11062 -23.86210 -21.57036 -21.10465 -20.77264 -18.59485 -17.62821 -17.06062 -16.76139 -16.26770 -15.82952 -15.51631 -15.01003 -14.92300 -14.37640 -14.09986 -13.67401 -13.34343 -13.21711 -12.93702 -12.81656 -12.81408 -12.53097 -12.33891 -12.22830 -12.00809 -11.84419 -11.77193 -11.63068 -11.28770 -11.16201 -10.67907 -10.45671 -9.21573 -8.85321 -8.16189 -6.02040 1.34878 1.43226 1.46831 2.18267 2.54270 2.57301 3.22753 3.63027 3.95700 4.04666 4.18167 4.33717 4.42816 4.50648 4.65524 4.69247 4.77530 4.80461 4.89555 4.92254 4.97089 4.99825 5.03993 5.10114 5.22434 5.26533 5.34250 5.43579 5.53787 5.57350 5.68056 5.81731 6.21749 6.36594 6.56355 7.20182 7.45731 7.80434 8.45505 8.90749 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.012889 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.446993 B = 2171.942212 C = 3155.824459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 N -0.671 5.671 4 C 0.101 3.899 5 C 0.705 3.295 6 O -0.645 6.645 7 N -0.476 5.476 8 C -0.304 4.304 9 H 0.059 0.941 10 C 0.019 3.981 11 N -0.892 5.892 12 Si 0.958 3.042 13 H -0.255 1.255 14 H -0.286 1.286 15 H -0.288 1.288 16 C 0.128 3.872 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.106 4.106 20 C -0.127 4.127 21 H 0.083 0.917 22 H 0.019 0.981 23 H 0.052 0.948 24 H 0.108 0.892 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.636 -5.979 -7.426 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 N -0.413 5.413 4 C -0.042 4.042 5 C 0.411 3.589 6 O -0.526 6.526 7 N -0.201 5.201 8 C -0.433 4.433 9 H 0.076 0.924 10 C -0.185 4.185 11 N -0.528 5.528 12 Si 0.784 3.216 13 H -0.179 1.179 14 H -0.211 1.211 15 H -0.214 1.214 16 C 0.024 3.976 17 C -0.158 4.158 18 C -0.151 4.151 19 C -0.144 4.144 20 C -0.166 4.166 21 H 0.102 0.898 22 H 0.039 0.961 23 H 0.071 0.929 24 H 0.126 0.874 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.057 -5.921 -6.983 11.560 hybrid contribution -0.820 0.988 0.962 1.604 sum 6.238 -4.933 -6.021 9.975 Atomic orbital electron populations 1.22117 0.97172 1.01912 1.00573 1.21299 0.93972 0.81085 1.02309 1.46798 1.74412 1.15384 1.04682 1.21718 1.00477 0.97231 0.84750 1.16540 0.82881 0.77351 0.82129 1.90605 1.49562 1.66904 1.45549 1.42867 1.10178 1.32901 1.34183 1.18618 1.19387 1.00202 1.05139 0.92381 1.26149 0.95657 0.98676 0.97990 1.69900 1.28227 1.27580 1.27124 0.85555 0.78552 0.77894 0.79609 1.17914 1.21133 1.21429 1.21988 0.86665 0.96892 0.92009 1.22536 0.98494 0.96895 0.97848 1.22370 0.96358 0.97438 0.98970 1.22227 0.96601 0.94441 1.01117 1.22458 0.95436 0.99215 0.99452 0.89781 0.96132 0.92889 0.87428 0.93214 0.91408 0.88408 0.96620 0.93160 0.90032 0.90366 0.93244 0.93686 0.91051 0.92107 0.89674 0.94080 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 10.18 71.98 0.73 -4.52 16 2 C 0.14 4.54 6.18 86.38 0.53 5.07 16 3 N -0.67 -28.04 2.29 -864.91 -1.98 -30.02 16 4 C 0.10 3.58 9.76 127.77 1.25 4.83 16 5 C 0.71 37.50 6.35 179.05 1.14 38.64 16 6 O -0.64 -40.68 16.20 -3.96 -0.06 -40.75 16 7 N -0.48 -23.97 2.13 -626.06 -1.33 -25.30 16 8 C -0.30 -16.82 6.17 84.01 0.52 -16.30 16 9 H 0.06 3.25 7.37 -2.91 -0.02 3.22 16 10 C 0.02 1.06 5.16 84.90 0.44 1.50 16 11 N -0.89 -52.13 13.14 21.65 0.28 -51.85 16 12 Si 0.96 45.98 29.57 68.60 2.03 48.01 16 13 H -0.25 -11.23 7.11 99.48 0.71 -10.52 16 14 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 15 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 16 C 0.13 5.03 2.25 45.72 0.10 5.13 16 17 C -0.12 -4.39 4.72 31.70 0.15 -4.24 16 18 C -0.11 -3.86 6.56 31.91 0.21 -3.65 16 19 C -0.11 -3.08 6.83 31.67 0.22 -2.87 16 20 C -0.13 -4.37 6.29 31.32 0.20 -4.17 16 21 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.02 0.84 7.56 -2.39 -0.02 0.83 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.11 2.54 7.84 -2.38 -0.02 2.52 16 25 H 0.05 1.75 8.03 -2.39 -0.02 1.73 16 26 H 0.07 2.50 3.97 -2.39 -0.01 2.49 16 27 H 0.10 2.47 7.79 -2.39 -0.02 2.45 16 28 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.26 14.74 8.32 -92.71 -0.77 13.97 16 30 H 0.08 2.91 5.63 -2.39 -0.01 2.90 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 2.26 7.86 -2.39 -0.02 2.24 16 33 H 0.04 1.83 7.23 -2.39 -0.02 1.82 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.04 1.66 7.09 -2.39 -0.02 1.64 16 38 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -72.67 298.94 5.44 -67.23 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.02 Total: 13.25 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 5.48 Total: 19.43 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -3.03 Total: -107.17 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.06 Total: -40.75 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -72.67 5.44 -67.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091973499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.643 kcal (2) G-P(sol) polarization free energy of solvation -72.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds