Wall clock time and date at job start Mon Mar 30 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46907 * 109.46750 * 2 1 4 4 C 1.47899 * 110.99970 * 65.17633 * 3 2 1 5 5 C 1.53992 * 107.05719 * 145.84693 * 4 3 2 6 6 C 1.54600 * 105.22634 * 358.72016 * 5 4 3 7 7 C 1.48528 * 110.99550 * 182.57256 * 3 2 1 8 8 H 1.08998 * 110.67558 * 318.88085 * 7 3 2 9 9 C 1.53007 * 110.66890 * 81.84786 * 7 3 2 10 10 N 1.46497 * 109.46762 * 306.03673 * 9 7 3 11 11 C 1.46503 * 120.00125 * 96.78143 * 10 9 7 12 12 C 1.34783 * 120.00193 * 276.78718 * 10 9 7 13 13 O 1.21693 * 119.99523 * 359.97438 * 12 10 9 14 14 C 1.46369 * 120.00101 * 180.02562 * 12 10 9 15 15 H 1.08001 * 120.00487 * 359.97438 * 14 12 10 16 16 C 1.40049 * 119.99848 * 179.97438 * 14 12 10 17 17 N 1.30669 * 120.00154 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00144 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46774 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46927 * 120.00290 * 18 16 14 21 21 H 1.48494 * 109.47619 * 240.00684 * 18 16 14 22 22 H 1.09007 * 109.46666 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47831 * 299.94164 * 1 2 3 24 24 H 1.09001 * 109.47321 * 59.94961 * 1 2 3 25 25 H 1.09003 * 109.47643 * 239.99796 * 2 1 3 26 26 H 1.09008 * 109.47087 * 119.99424 * 2 1 3 27 27 H 1.09000 * 109.92212 * 26.48812 * 4 3 2 28 28 H 1.08999 * 109.91520 * 265.19585 * 4 3 2 29 29 H 1.08992 * 110.30974 * 117.68929 * 5 4 3 30 30 H 1.09003 * 110.30430 * 239.76136 * 5 4 3 31 31 H 1.09000 * 110.71985 * 96.45353 * 6 5 4 32 32 H 1.08996 * 110.72460 * 219.73638 * 6 5 4 33 33 H 1.09001 * 109.47257 * 66.03463 * 9 7 3 34 34 H 1.08993 * 109.47258 * 186.03851 * 9 7 3 35 35 H 1.08999 * 109.47208 * 90.00530 * 11 10 9 36 36 H 1.09003 * 109.47244 * 210.00279 * 11 10 9 37 37 H 1.09005 * 109.47044 * 329.99755 * 11 10 9 38 38 H 0.96996 * 120.00250 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6497 2.0780 1.2532 5 6 2.7958 3.0509 1.5866 6 6 3.8439 2.8418 0.4695 7 6 3.5030 1.4252 -0.0622 8 1 3.9360 0.6576 0.5792 9 6 3.9878 1.2580 -1.5038 10 7 3.4080 0.0403 -2.0758 11 6 2.1999 0.1216 -2.9005 12 6 3.9860 -1.1549 -1.8432 13 8 4.9897 -1.2224 -1.1585 14 6 3.4070 -2.3715 -2.4152 15 1 2.5164 -2.3116 -3.0233 16 6 4.0079 -3.6133 -2.1740 17 7 5.0850 -3.6859 -1.4379 18 14 3.2686 -5.1661 -2.9033 19 1 2.0595 -4.8158 -3.6912 20 1 4.2647 -5.8192 -3.7901 21 1 2.8941 -6.0974 -1.8090 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5129 0.8904 24 1 -0.3634 0.5146 -0.8895 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 1.5324 1.3524 2.0581 28 1 0.7219 2.6321 1.1111 29 1 2.4339 4.0789 1.5783 30 1 3.2259 2.8097 2.5588 31 1 3.7240 3.5876 -0.3162 32 1 4.8540 2.8694 0.8782 33 1 3.6771 2.1202 -2.0939 34 1 5.0751 1.1827 -1.5151 35 1 2.4812 0.2594 -3.9445 36 1 1.6268 -0.7998 -2.7973 37 1 1.5927 0.9657 -2.5733 38 1 5.5010 -4.5461 -1.2705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092630759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:45 Heat of formation + Delta-G solvation = -24.444456 kcal Electronic energy + Delta-G solvation = -18634.109636 eV Core-core repulsion = 15897.828387 eV Total energy + Delta-G solvation = -2736.281249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.21012 -37.13561 -33.82170 -33.09605 -32.40242 -29.99422 -28.25838 -26.57056 -25.70974 -23.88517 -22.18470 -20.29768 -20.06457 -18.78662 -16.41121 -15.92116 -15.54933 -15.30347 -14.39697 -14.18768 -14.00890 -13.67008 -13.17851 -12.73239 -12.55987 -12.15202 -11.92387 -11.46030 -11.34866 -11.28681 -11.19106 -11.04818 -11.02847 -10.85689 -10.65440 -10.56172 -10.32496 -10.17862 -10.04459 -9.95813 -8.85499 -7.99631 -7.55783 -7.03688 -6.18688 -4.63748 3.12172 3.20915 3.24852 4.09419 4.41799 4.56310 4.64701 5.00774 5.07613 5.20127 5.59305 5.65455 5.74352 5.75122 5.85415 5.92203 5.95606 6.01188 6.04336 6.17714 6.21231 6.25689 6.26897 6.36555 6.48495 6.50588 6.62775 6.65460 6.73200 6.87569 7.45321 7.46440 7.57018 7.70624 8.17182 8.40204 9.03363 9.46798 10.58901 10.78225 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.007719 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.146319 B = 3626.695011 C = 3946.282197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.020 3.980 3 N -0.504 5.504 4 C 0.035 3.965 5 C -0.129 4.129 6 C -0.117 4.117 7 C 0.051 3.949 8 H 0.058 0.942 9 C 0.147 3.853 10 N -0.643 5.643 11 C 0.101 3.899 12 C 0.555 3.445 13 O -0.578 6.578 14 C -0.544 4.544 15 H 0.072 0.928 16 C 0.088 3.912 17 N -0.767 5.767 18 Si 0.903 3.097 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.277 1.277 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.023 0.977 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 9.235 2.218 11.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 N -0.228 5.228 4 C -0.094 4.094 5 C -0.167 4.167 6 C -0.156 4.156 7 C -0.058 4.058 8 H 0.076 0.924 9 C 0.022 3.978 10 N -0.381 5.381 11 C -0.043 4.043 12 C 0.361 3.639 13 O -0.461 6.461 14 C -0.581 4.581 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.396 5.396 18 Si 0.728 3.272 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.138 0.862 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.828 9.313 2.208 11.757 hybrid contribution -0.141 -1.239 0.455 1.328 sum -6.969 8.073 2.663 10.993 Atomic orbital electron populations 1.21750 0.95985 1.01020 1.01193 1.22810 0.94843 0.89186 1.03915 1.64707 1.09899 1.15483 1.32752 1.22838 0.98219 0.96472 0.91840 1.22362 0.96299 0.99407 0.98660 1.22506 0.98277 0.97004 0.97782 1.23261 0.87911 0.95774 0.98885 0.92376 1.20918 0.97937 0.87987 0.90935 1.47980 1.29101 1.06559 1.54453 1.21471 0.88049 1.01543 0.93195 1.18237 0.83354 0.81663 0.80637 1.90597 1.27056 1.85506 1.42910 1.21064 1.12988 0.90243 1.33822 0.90957 1.25727 0.93923 1.00037 0.93484 1.70031 1.15627 1.25307 1.28647 0.86384 0.79801 0.81700 0.79325 1.18691 1.20183 1.20229 0.92683 0.93939 0.92324 0.86172 0.95907 0.94510 0.91157 0.91578 0.92078 0.90999 0.91376 0.92239 0.91413 0.95630 0.91453 0.92613 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.90 37.16 0.37 -1.78 16 2 C 0.02 0.38 4.64 -3.82 -0.02 0.36 16 3 N -0.50 -8.59 4.47 -222.52 -1.00 -9.59 16 4 C 0.03 0.50 5.56 -2.76 -0.02 0.49 16 5 C -0.13 -1.66 6.92 -25.37 -0.18 -1.84 16 6 C -0.12 -1.68 6.52 -24.78 -0.16 -1.84 16 7 C 0.05 0.94 2.73 -65.69 -0.18 0.76 16 8 H 0.06 1.30 8.02 -51.93 -0.42 0.88 16 9 C 0.15 2.92 5.19 -4.04 -0.02 2.90 16 10 N -0.64 -14.48 1.68 -183.24 -0.31 -14.79 16 11 C 0.10 1.92 8.11 59.85 0.49 2.41 16 12 C 0.56 15.49 6.58 -12.99 -0.09 15.41 16 13 O -0.58 -18.42 14.71 5.20 0.08 -18.34 16 14 C -0.54 -15.08 8.72 -35.63 -0.31 -15.39 16 15 H 0.07 1.85 6.00 -52.49 -0.31 1.53 16 16 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 17 N -0.77 -22.86 11.83 55.55 0.66 -22.20 16 18 Si 0.90 20.03 29.56 -169.99 -5.02 15.00 16 19 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 23 H 0.04 0.58 7.36 -51.93 -0.38 0.20 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.12 2.57 2.82 -51.93 -0.15 2.42 16 26 H 0.02 0.47 7.95 -51.92 -0.41 0.06 16 27 H 0.04 0.55 7.65 -51.93 -0.40 0.15 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.03 7.86 -51.93 -0.41 0.62 16 34 H 0.07 1.46 7.63 -51.93 -0.40 1.07 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 1.31 5.59 -51.93 -0.29 1.02 16 37 H 0.06 0.95 7.46 -51.93 -0.39 0.56 16 38 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -32.30 295.49 -7.41 -39.71 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.06 Total: 1.93 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -0.21 Total: 3.82 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.65 Total: -46.58 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.08 Total: -18.34 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.30 -7.41 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092630759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.262 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds