Wall clock time and date at job start Mon Mar 30 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46907 * 109.46750 * 2 1 4 4 C 1.47899 * 110.99970 * 65.17633 * 3 2 1 5 5 C 1.53992 * 107.05719 * 145.84693 * 4 3 2 6 6 C 1.54600 * 105.22634 * 358.72016 * 5 4 3 7 7 C 1.48528 * 110.99550 * 182.57256 * 3 2 1 8 8 H 1.08998 * 110.67558 * 318.88085 * 7 3 2 9 9 C 1.53007 * 110.66890 * 81.84786 * 7 3 2 10 10 N 1.46497 * 109.46762 * 306.03673 * 9 7 3 11 11 C 1.46503 * 120.00125 * 96.78143 * 10 9 7 12 12 C 1.34783 * 120.00193 * 276.78718 * 10 9 7 13 13 O 1.21693 * 119.99523 * 359.97438 * 12 10 9 14 14 C 1.46369 * 120.00101 * 180.02562 * 12 10 9 15 15 H 1.08001 * 120.00487 * 359.97438 * 14 12 10 16 16 C 1.40049 * 119.99848 * 179.97438 * 14 12 10 17 17 N 1.30669 * 120.00154 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00144 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46774 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46927 * 120.00290 * 18 16 14 21 21 H 1.48494 * 109.47619 * 240.00684 * 18 16 14 22 22 H 1.09007 * 109.46666 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47831 * 299.94164 * 1 2 3 24 24 H 1.09001 * 109.47321 * 59.94961 * 1 2 3 25 25 H 1.09003 * 109.47643 * 239.99796 * 2 1 3 26 26 H 1.09008 * 109.47087 * 119.99424 * 2 1 3 27 27 H 1.09000 * 109.92212 * 26.48812 * 4 3 2 28 28 H 1.08999 * 109.91520 * 265.19585 * 4 3 2 29 29 H 1.08992 * 110.30974 * 117.68929 * 5 4 3 30 30 H 1.09003 * 110.30430 * 239.76136 * 5 4 3 31 31 H 1.09000 * 110.71985 * 96.45353 * 6 5 4 32 32 H 1.08996 * 110.72460 * 219.73638 * 6 5 4 33 33 H 1.09001 * 109.47257 * 66.03463 * 9 7 3 34 34 H 1.08993 * 109.47258 * 186.03851 * 9 7 3 35 35 H 1.08999 * 109.47208 * 90.00530 * 11 10 9 36 36 H 1.09003 * 109.47244 * 210.00279 * 11 10 9 37 37 H 1.09005 * 109.47044 * 329.99755 * 11 10 9 38 38 H 0.96996 * 120.00250 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6497 2.0780 1.2532 5 6 2.7958 3.0509 1.5866 6 6 3.8439 2.8418 0.4695 7 6 3.5030 1.4252 -0.0622 8 1 3.9360 0.6576 0.5792 9 6 3.9878 1.2580 -1.5038 10 7 3.4080 0.0403 -2.0758 11 6 2.1999 0.1216 -2.9005 12 6 3.9860 -1.1549 -1.8432 13 8 4.9897 -1.2224 -1.1585 14 6 3.4070 -2.3715 -2.4152 15 1 2.5164 -2.3116 -3.0233 16 6 4.0079 -3.6133 -2.1740 17 7 5.0850 -3.6859 -1.4379 18 14 3.2686 -5.1661 -2.9033 19 1 2.0595 -4.8158 -3.6912 20 1 4.2647 -5.8192 -3.7901 21 1 2.8941 -6.0974 -1.8090 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5129 0.8904 24 1 -0.3634 0.5146 -0.8895 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 1.5324 1.3524 2.0581 28 1 0.7219 2.6321 1.1111 29 1 2.4339 4.0789 1.5783 30 1 3.2259 2.8097 2.5588 31 1 3.7240 3.5876 -0.3162 32 1 4.8540 2.8694 0.8782 33 1 3.6771 2.1202 -2.0939 34 1 5.0751 1.1827 -1.5151 35 1 2.4812 0.2594 -3.9445 36 1 1.6268 -0.7998 -2.7973 37 1 1.5927 0.9657 -2.5733 38 1 5.5010 -4.5461 -1.2705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092630759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:45 Heat of formation + Delta-G solvation = -46.507037 kcal Electronic energy + Delta-G solvation = -18635.066341 eV Core-core repulsion = 15897.828387 eV Total energy + Delta-G solvation = -2737.237955 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73567 -38.96359 -35.72728 -34.64976 -34.34297 -31.46370 -29.52053 -28.47669 -27.38057 -25.57239 -23.56190 -21.83658 -21.37574 -20.57874 -18.35609 -17.63240 -17.29254 -16.72349 -16.24354 -15.90642 -15.32155 -15.09049 -14.81331 -14.39951 -13.87084 -13.73826 -13.34280 -13.19217 -13.05947 -13.00869 -12.77841 -12.66340 -12.39735 -12.27368 -12.14699 -11.99924 -11.97388 -11.84706 -11.51491 -11.34971 -10.94104 -9.75153 -9.48154 -8.87252 -8.27536 -6.81925 1.38127 1.38688 1.56008 2.23505 2.48328 2.89167 3.10370 3.63390 3.79138 3.84018 4.07435 4.21253 4.27691 4.44522 4.47125 4.61544 4.64102 4.70247 4.72819 4.82013 4.88554 4.98424 5.00307 5.02909 5.07218 5.10528 5.18103 5.26410 5.34206 5.38455 5.43009 5.77801 6.03898 6.15583 6.20879 6.48056 6.89795 7.47500 8.50937 8.70236 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.007719 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.146319 B = 3626.695011 C = 3946.282197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.022 3.978 3 N -0.494 5.494 4 C 0.031 3.969 5 C -0.122 4.122 6 C -0.109 4.109 7 C 0.052 3.948 8 H 0.003 0.997 9 C 0.146 3.854 10 N -0.641 5.641 11 C 0.105 3.895 12 C 0.543 3.457 13 O -0.633 6.633 14 C -0.567 4.567 15 H 0.091 0.909 16 C 0.029 3.971 17 N -0.823 5.823 18 Si 0.990 3.010 19 H -0.244 1.244 20 H -0.270 1.270 21 H -0.271 1.271 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.093 0.907 26 H -0.014 1.014 27 H 0.026 0.974 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.840 10.592 1.341 14.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 N -0.219 5.219 4 C -0.097 4.097 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.058 4.058 8 H 0.021 0.979 9 C 0.022 3.978 10 N -0.377 5.377 11 C -0.038 4.038 12 C 0.349 3.651 13 O -0.520 6.520 14 C -0.603 4.603 15 H 0.109 0.891 16 C -0.186 4.186 17 N -0.453 5.453 18 Si 0.810 3.190 19 H -0.166 1.166 20 H -0.195 1.195 21 H -0.196 1.196 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.111 0.889 26 H 0.004 0.996 27 H 0.044 0.956 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.427 10.726 1.313 14.340 hybrid contribution 0.655 -1.576 0.748 1.863 sum -8.773 9.150 2.060 12.843 Atomic orbital electron populations 1.21662 0.92783 1.01706 1.02663 1.22712 0.97419 0.89704 1.00826 1.64736 1.08442 1.14280 1.34429 1.22985 1.00025 0.96507 0.90200 1.22373 0.94959 1.00678 0.97997 1.22501 0.99090 0.94314 0.98903 1.23107 0.88892 0.96954 0.96882 0.97923 1.21057 0.96388 0.87895 0.92496 1.47816 1.29670 1.05951 1.54270 1.21571 0.86691 1.02270 0.93233 1.18555 0.82912 0.83541 0.80109 1.90548 1.29484 1.86813 1.45161 1.21551 1.13727 0.90859 1.34213 0.89069 1.26957 0.93999 1.04223 0.93392 1.70211 1.17778 1.26682 1.30642 0.85078 0.79358 0.76053 0.78523 1.16636 1.19493 1.19615 0.92505 0.92271 0.90870 0.88933 0.99575 0.95554 0.88572 0.88355 0.91848 0.88836 0.91157 0.88706 0.94275 0.94336 0.92147 0.90058 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.90 71.98 0.71 -2.99 16 2 C 0.02 0.83 4.64 86.30 0.40 1.23 16 3 N -0.49 -16.33 4.47 -857.91 -3.84 -20.17 16 4 C 0.03 0.82 5.56 86.45 0.48 1.30 16 5 C -0.12 -2.79 6.92 31.47 0.22 -2.57 16 6 C -0.11 -2.96 6.52 31.86 0.21 -2.75 16 7 C 0.05 1.93 2.73 45.32 0.12 2.06 16 8 H 0.00 0.12 8.02 -2.39 -0.02 0.10 16 9 C 0.15 5.86 5.19 86.38 0.45 6.31 16 10 N -0.64 -29.38 1.68 -851.86 -1.43 -30.81 16 11 C 0.11 3.84 8.11 127.77 1.04 4.88 16 12 C 0.54 31.62 6.58 86.36 0.57 32.19 16 13 O -0.63 -42.97 14.71 -4.33 -0.06 -43.04 16 14 C -0.57 -32.10 8.72 24.83 0.22 -31.88 16 15 H 0.09 4.64 6.00 -2.91 -0.02 4.62 16 16 C 0.03 1.63 5.50 85.31 0.47 2.10 16 17 N -0.82 -51.17 11.83 21.84 0.26 -50.91 16 18 Si 0.99 41.38 29.56 68.60 2.03 43.41 16 19 H -0.24 -9.31 7.11 99.48 0.71 -8.60 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.06 1.47 7.36 -2.39 -0.02 1.46 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 4.03 2.82 -2.39 -0.01 4.03 16 26 H -0.01 -0.62 7.95 -2.38 -0.02 -0.64 16 27 H 0.03 0.76 7.65 -2.39 -0.02 0.74 16 28 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 2.15 7.94 -2.39 -0.02 2.14 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 3.10 7.86 -2.39 -0.02 3.08 16 34 H 0.04 1.77 7.63 -2.39 -0.02 1.76 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 2.29 5.59 -2.39 -0.01 2.28 16 37 H 0.08 2.54 7.46 -2.38 -0.02 2.52 16 38 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 Total: -1.00 -75.25 295.49 2.87 -72.38 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.03 Total: 19.28 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 4.88 Total: 9.86 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -5.01 Total: -101.89 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.06 Total: -43.04 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -75.25 2.87 -72.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092630759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.869 kcal (2) G-P(sol) polarization free energy of solvation -75.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds