Wall clock time and date at job start Mon Mar 30 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46894 * 109.47141 * 2 1 4 4 C 1.47852 * 111.00141 * 63.87445 * 3 2 1 5 5 C 1.54907 * 104.79531 * 146.36403 * 4 3 2 6 6 C 1.55148 * 101.65183 * 322.92912 * 5 4 3 7 7 C 1.47443 * 111.00264 * 184.71489 * 3 2 1 8 8 H 1.08997 * 109.88902 * 117.16989 * 7 3 2 9 9 C 1.53008 * 109.88648 * 356.15112 * 7 3 2 10 10 N 1.46504 * 109.47124 * 174.84034 * 9 7 3 11 11 C 1.46495 * 119.99838 * 275.95145 * 10 9 7 12 12 C 1.34777 * 119.99690 * 95.95018 * 10 9 7 13 13 O 1.21687 * 120.00175 * 359.97438 * 12 10 9 14 14 C 1.46376 * 119.99451 * 179.97438 * 12 10 9 15 15 H 1.07999 * 120.00128 * 6.94622 * 14 12 10 16 16 C 1.40052 * 119.99626 * 186.95131 * 14 12 10 17 17 N 1.30669 * 119.99853 * 182.18835 * 16 14 12 18 18 Si 1.86799 * 119.99968 * 2.17896 * 16 14 12 19 19 H 1.48504 * 109.47065 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47229 * 300.00310 * 18 16 14 21 21 H 1.48493 * 109.47249 * 60.00648 * 18 16 14 22 22 H 1.08998 * 109.46850 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47039 * 300.00186 * 1 2 3 24 24 H 1.09001 * 109.46512 * 60.00671 * 1 2 3 25 25 H 1.08997 * 109.47376 * 239.99456 * 2 1 3 26 26 H 1.09008 * 109.46800 * 119.99596 * 2 1 3 27 27 H 1.08996 * 110.37368 * 265.19468 * 4 3 2 28 28 H 1.08996 * 110.37230 * 27.53721 * 4 3 2 29 29 H 1.09000 * 110.99155 * 81.01977 * 5 4 3 30 30 H 1.08996 * 110.98722 * 204.80052 * 5 4 3 31 31 H 1.09001 * 110.70541 * 277.27092 * 6 5 4 32 32 H 1.09004 * 110.70099 * 154.04116 * 6 5 4 33 33 H 1.09003 * 109.47112 * 54.83862 * 9 7 3 34 34 H 1.08999 * 109.46469 * 294.83845 * 9 7 3 35 35 H 1.09008 * 109.46632 * 264.76343 * 11 10 9 36 36 H 1.09004 * 109.47455 * 24.75904 * 11 10 9 37 37 H 1.08999 * 109.47425 * 144.76817 * 11 10 9 38 38 H 0.96998 * 120.00020 * 354.94433 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6233 2.0871 1.2393 5 6 2.7931 3.0587 1.5349 6 6 4.0198 2.2123 1.1038 7 6 3.4892 1.4259 -0.1131 8 1 3.7762 1.9288 -1.0366 9 6 4.0522 0.0032 -0.0991 10 7 5.4974 0.0475 -0.3352 11 6 6.0143 0.1093 -1.7046 12 6 6.3513 0.0314 0.7074 13 8 5.9218 -0.0195 1.8449 14 6 7.7952 0.0751 0.4714 15 1 8.1746 0.2331 -0.5273 16 6 8.6847 -0.0880 1.5408 17 7 9.9729 -0.0064 1.3374 18 14 8.0296 -0.4220 3.2580 19 1 9.1662 -0.5536 4.2046 20 1 7.1595 0.7037 3.6835 21 1 7.2422 -1.6810 3.2512 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 0.6991 2.6429 1.0814 28 1 1.5047 1.3761 2.0569 29 1 2.7113 3.9631 0.9321 30 1 2.8395 3.3022 2.5963 31 1 4.3186 1.5325 1.9017 32 1 4.8499 2.8568 0.8142 33 1 3.5738 -0.5846 -0.8826 34 1 3.8562 -0.4554 0.8701 35 1 6.2555 -0.8968 -2.0476 36 1 5.2589 0.5448 -2.3588 37 1 6.9129 0.7258 -1.7263 38 1 10.3161 0.0938 0.4358 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092630761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:48 Heat of formation + Delta-G solvation = -43.907699 kcal Electronic energy + Delta-G solvation = -18386.845486 eV Core-core repulsion = 15649.720247 eV Total energy + Delta-G solvation = -2737.125239 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.63538 -37.73931 -34.31258 -33.16110 -32.91586 -30.31389 -28.47011 -26.48482 -25.96400 -23.96372 -23.01660 -20.71435 -19.83918 -18.57262 -17.40715 -16.23375 -15.72079 -15.33669 -15.04229 -14.53638 -14.05932 -13.70073 -13.30967 -13.07102 -12.66668 -12.33703 -12.25760 -12.01338 -11.98867 -11.67141 -11.58234 -11.30095 -10.99342 -10.86671 -10.74027 -10.42713 -10.40568 -10.20949 -10.17442 -9.14247 -8.97550 -8.27021 -7.91680 -7.48007 -6.99355 -4.93270 3.56661 3.66328 3.93192 4.09665 4.30215 4.39917 4.61678 4.90428 4.94580 5.16450 5.22203 5.38071 5.39295 5.48733 5.54847 5.68210 5.71860 5.78571 5.84825 5.89195 5.98393 6.09725 6.10373 6.16622 6.16918 6.32344 6.36590 6.39576 6.59626 6.81553 7.10539 7.23167 7.29699 7.73759 7.78594 8.11465 8.83165 8.94500 10.02041 10.32514 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031483 B = 0.007396 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.151169 B = 3785.106736 C = 4070.150761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.036 3.964 3 N -0.524 5.524 4 C 0.044 3.956 5 C -0.131 4.131 6 C -0.135 4.135 7 C 0.059 3.941 8 H 0.078 0.922 9 C 0.108 3.892 10 N -0.636 5.636 11 C 0.104 3.896 12 C 0.554 3.446 13 O -0.615 6.615 14 C -0.595 4.595 15 H 0.075 0.925 16 C 0.060 3.940 17 N -0.834 5.834 18 Si 1.131 2.869 19 H -0.324 1.324 20 H -0.283 1.283 21 H -0.292 1.292 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 2.105 -3.966 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 N -0.249 5.249 4 C -0.084 4.084 5 C -0.169 4.169 6 C -0.174 4.174 7 C -0.050 4.050 8 H 0.096 0.904 9 C -0.017 4.017 10 N -0.370 5.370 11 C -0.040 4.040 12 C 0.365 3.635 13 O -0.509 6.509 14 C -0.631 4.631 15 H 0.093 0.907 16 C -0.157 4.157 17 N -0.461 5.461 18 Si 0.965 3.035 19 H -0.256 1.256 20 H -0.210 1.210 21 H -0.220 1.220 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.284 2.127 -2.400 14.640 hybrid contribution -0.018 -0.148 -1.433 1.441 sum -14.302 1.979 -3.834 14.939 Atomic orbital electron populations 1.21789 0.95323 1.01220 1.02104 1.22340 0.95479 0.90096 1.01242 1.63814 1.10653 1.14469 1.35979 1.23014 0.98334 0.96260 0.90755 1.22713 0.95075 0.98169 1.00982 1.22914 0.96886 0.98965 0.98604 1.22841 0.85877 0.97172 0.99125 0.90370 1.21826 0.82745 0.95290 1.01811 1.47496 1.04201 1.78841 1.06478 1.21392 0.99062 1.00378 0.83184 1.18430 0.87340 0.75246 0.82522 1.90075 1.78069 1.60699 1.22023 1.22167 0.89572 1.53459 0.97944 0.90714 1.27157 0.92973 0.88765 1.06854 1.70654 1.13743 1.36000 1.25706 0.82339 0.71247 0.78551 0.71384 1.25621 1.21022 1.21956 0.92575 0.92953 0.92161 0.90431 0.94244 0.90831 0.93706 0.91392 0.91219 0.88761 0.91452 0.92072 0.90251 0.94472 0.93356 0.91392 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.88 37.16 0.37 -1.19 16 2 C 0.04 0.48 4.39 -3.82 -0.02 0.46 16 3 N -0.52 -7.66 5.20 -223.35 -1.16 -8.83 16 4 C 0.04 0.60 5.52 -2.29 -0.01 0.59 16 5 C -0.13 -1.90 7.08 -24.59 -0.17 -2.08 16 6 C -0.14 -2.46 5.75 -24.91 -0.14 -2.60 16 7 C 0.06 0.99 3.67 -66.73 -0.24 0.75 16 8 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 9 C 0.11 1.98 3.66 -4.04 -0.01 1.97 16 10 N -0.64 -13.62 2.77 -183.24 -0.51 -14.12 16 11 C 0.10 1.88 10.07 59.84 0.60 2.48 16 12 C 0.55 14.48 6.93 -12.99 -0.09 14.39 16 13 O -0.62 -17.09 9.65 5.20 0.05 -17.04 16 14 C -0.60 -16.60 9.19 -35.63 -0.33 -16.92 16 15 H 0.07 2.05 6.26 -52.49 -0.33 1.72 16 16 C 0.06 1.72 5.52 -17.37 -0.10 1.63 16 17 N -0.83 -24.01 13.64 55.55 0.76 -23.25 16 18 Si 1.13 29.96 25.91 -169.99 -4.40 25.55 16 19 H -0.32 -8.32 7.11 56.52 0.40 -7.92 16 20 H -0.28 -7.64 6.87 56.52 0.39 -7.25 16 21 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.54 7.31 -51.93 -0.38 0.16 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.99 6.29 -51.93 -0.33 0.66 16 26 H 0.04 0.56 6.82 -51.92 -0.35 0.21 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.62 7.71 -51.93 -0.40 0.22 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 2.04 5.84 -51.93 -0.30 1.73 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.06 0.98 6.10 -51.93 -0.32 0.67 16 34 H 0.08 1.62 6.14 -51.93 -0.32 1.30 16 35 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.05 0.72 8.03 -51.93 -0.42 0.30 16 37 H 0.07 1.30 6.32 -51.93 -0.33 0.97 16 38 H 0.28 7.66 8.72 -40.82 -0.36 7.30 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -30.33 290.59 -7.06 -37.38 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -6.02 Total: -3.54 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.15 Total: -0.53 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.91 Total: -46.20 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.05 Total: -17.04 kcal Atomic # 14 Polarization: 29.96 SS G_CDS: -4.40 Total: 25.55 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.33 -7.06 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092630761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.524 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds