Wall clock time and date at job start Mon Mar 30 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46894 * 109.47141 * 2 1 4 4 C 1.47852 * 111.00141 * 63.87445 * 3 2 1 5 5 C 1.54907 * 104.79531 * 146.36403 * 4 3 2 6 6 C 1.55148 * 101.65183 * 322.92912 * 5 4 3 7 7 C 1.47443 * 111.00264 * 184.71489 * 3 2 1 8 8 H 1.08997 * 109.88902 * 117.16989 * 7 3 2 9 9 C 1.53008 * 109.88648 * 356.15112 * 7 3 2 10 10 N 1.46504 * 109.47124 * 174.84034 * 9 7 3 11 11 C 1.46495 * 119.99838 * 275.95145 * 10 9 7 12 12 C 1.34777 * 119.99690 * 95.95018 * 10 9 7 13 13 O 1.21687 * 120.00175 * 359.97438 * 12 10 9 14 14 C 1.46376 * 119.99451 * 179.97438 * 12 10 9 15 15 H 1.07999 * 120.00128 * 6.94622 * 14 12 10 16 16 C 1.40052 * 119.99626 * 186.95131 * 14 12 10 17 17 N 1.30669 * 119.99853 * 182.18835 * 16 14 12 18 18 Si 1.86799 * 119.99968 * 2.17896 * 16 14 12 19 19 H 1.48504 * 109.47065 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47229 * 300.00310 * 18 16 14 21 21 H 1.48493 * 109.47249 * 60.00648 * 18 16 14 22 22 H 1.08998 * 109.46850 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47039 * 300.00186 * 1 2 3 24 24 H 1.09001 * 109.46512 * 60.00671 * 1 2 3 25 25 H 1.08997 * 109.47376 * 239.99456 * 2 1 3 26 26 H 1.09008 * 109.46800 * 119.99596 * 2 1 3 27 27 H 1.08996 * 110.37368 * 265.19468 * 4 3 2 28 28 H 1.08996 * 110.37230 * 27.53721 * 4 3 2 29 29 H 1.09000 * 110.99155 * 81.01977 * 5 4 3 30 30 H 1.08996 * 110.98722 * 204.80052 * 5 4 3 31 31 H 1.09001 * 110.70541 * 277.27092 * 6 5 4 32 32 H 1.09004 * 110.70099 * 154.04116 * 6 5 4 33 33 H 1.09003 * 109.47112 * 54.83862 * 9 7 3 34 34 H 1.08999 * 109.46469 * 294.83845 * 9 7 3 35 35 H 1.09008 * 109.46632 * 264.76343 * 11 10 9 36 36 H 1.09004 * 109.47455 * 24.75904 * 11 10 9 37 37 H 1.08999 * 109.47425 * 144.76817 * 11 10 9 38 38 H 0.96998 * 120.00020 * 354.94433 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6233 2.0871 1.2393 5 6 2.7931 3.0587 1.5349 6 6 4.0198 2.2123 1.1038 7 6 3.4892 1.4259 -0.1131 8 1 3.7762 1.9288 -1.0366 9 6 4.0522 0.0032 -0.0991 10 7 5.4974 0.0475 -0.3352 11 6 6.0143 0.1093 -1.7046 12 6 6.3513 0.0314 0.7074 13 8 5.9218 -0.0195 1.8449 14 6 7.7952 0.0751 0.4714 15 1 8.1746 0.2331 -0.5273 16 6 8.6847 -0.0880 1.5408 17 7 9.9729 -0.0064 1.3374 18 14 8.0296 -0.4220 3.2580 19 1 9.1662 -0.5536 4.2046 20 1 7.1595 0.7037 3.6835 21 1 7.2422 -1.6810 3.2512 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 0.6991 2.6429 1.0814 28 1 1.5047 1.3761 2.0569 29 1 2.7113 3.9631 0.9321 30 1 2.8395 3.3022 2.5963 31 1 4.3186 1.5325 1.9017 32 1 4.8499 2.8568 0.8142 33 1 3.5738 -0.5846 -0.8826 34 1 3.8562 -0.4554 0.8701 35 1 6.2555 -0.8968 -2.0476 36 1 5.2589 0.5448 -2.3588 37 1 6.9129 0.7258 -1.7263 38 1 10.3161 0.0938 0.4358 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092630761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:48 Heat of formation + Delta-G solvation = -64.991022 kcal Electronic energy + Delta-G solvation = -18387.759728 eV Core-core repulsion = 15649.720247 eV Total energy + Delta-G solvation = -2738.039480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06139 -39.49692 -36.11037 -35.10877 -34.26191 -31.71753 -29.58917 -28.37835 -27.55770 -25.60818 -24.07356 -22.01552 -21.59256 -20.09450 -19.35112 -17.82889 -17.18904 -16.95398 -16.47309 -15.95731 -15.65920 -15.52005 -14.74838 -14.71369 -14.02059 -13.96219 -13.80541 -13.67459 -13.33477 -13.16712 -12.91719 -12.55459 -12.43436 -12.34150 -12.13718 -12.04474 -11.91513 -11.74388 -11.49259 -11.25235 -11.18683 -10.03019 -9.62962 -9.18595 -9.06621 -7.11761 1.41320 1.51590 1.93270 2.18649 2.33424 2.60242 3.09012 3.27710 3.66583 3.74566 3.84735 4.16710 4.23782 4.28402 4.36391 4.39813 4.47869 4.55869 4.61587 4.69198 4.81430 4.88435 4.91863 4.97852 5.01359 5.02221 5.10347 5.19031 5.31317 5.32971 5.43390 5.55840 5.82038 5.94091 6.08851 6.18961 6.65532 6.99792 7.97736 8.12130 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031483 B = 0.007396 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.151169 B = 3785.106736 C = 4070.150761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.033 3.967 3 N -0.520 5.520 4 C 0.046 3.954 5 C -0.124 4.124 6 C -0.139 4.139 7 C 0.067 3.933 8 H 0.082 0.918 9 C 0.111 3.889 10 N -0.635 5.635 11 C 0.102 3.898 12 C 0.552 3.448 13 O -0.635 6.635 14 C -0.612 4.612 15 H 0.073 0.927 16 C 0.030 3.970 17 N -0.851 5.851 18 Si 1.163 2.837 19 H -0.311 1.311 20 H -0.297 1.297 21 H -0.298 1.298 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.023 0.977 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 2.318 -5.016 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 N -0.245 5.245 4 C -0.082 4.082 5 C -0.162 4.162 6 C -0.178 4.178 7 C -0.042 4.042 8 H 0.100 0.900 9 C -0.013 4.013 10 N -0.368 5.368 11 C -0.041 4.041 12 C 0.360 3.640 13 O -0.530 6.530 14 C -0.649 4.649 15 H 0.092 0.908 16 C -0.185 4.185 17 N -0.479 5.479 18 Si 0.995 3.005 19 H -0.242 1.242 20 H -0.225 1.225 21 H -0.227 1.227 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.042 0.958 27 H 0.118 0.882 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.554 2.338 -3.482 17.077 hybrid contribution 0.605 -0.211 -1.171 1.335 sum -15.949 2.127 -4.653 16.749 Atomic orbital electron populations 1.21734 0.93063 1.02388 1.02491 1.22437 0.97366 0.89021 1.00707 1.63925 1.08620 1.15483 1.36427 1.23087 0.98832 0.96012 0.90234 1.22704 0.93426 0.98350 1.01674 1.22810 0.97995 0.98787 0.98222 1.22685 0.87467 0.95606 0.98447 0.89961 1.21972 0.80890 0.96817 1.01579 1.47457 1.05240 1.77287 1.06795 1.21553 0.99696 1.01054 0.81835 1.18321 0.87507 0.74980 0.83231 1.90059 1.78477 1.61219 1.23246 1.22347 0.90858 1.53872 0.97819 0.90850 1.27729 0.93269 0.88911 1.08565 1.70658 1.13936 1.37468 1.25854 0.81898 0.70835 0.77489 0.70261 1.24242 1.22486 1.22655 0.91118 0.92693 0.91571 0.89913 0.95833 0.88243 0.94140 0.89882 0.90597 0.92611 0.93416 0.89055 0.92673 0.93519 0.89494 0.92872 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.88 71.98 0.71 -1.79 16 2 C 0.03 0.77 4.39 86.31 0.38 1.15 16 3 N -0.52 -13.83 5.20 -860.54 -4.48 -18.31 16 4 C 0.05 1.13 5.52 86.77 0.48 1.61 16 5 C -0.12 -3.37 7.08 31.98 0.23 -3.15 16 6 C -0.14 -5.05 5.75 31.77 0.18 -4.87 16 7 C 0.07 2.16 3.67 45.26 0.17 2.32 16 8 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 9 C 0.11 3.92 3.66 86.38 0.32 4.24 16 10 N -0.64 -26.64 2.77 -851.86 -2.36 -29.01 16 11 C 0.10 3.48 10.07 127.77 1.29 4.76 16 12 C 0.55 29.04 6.93 86.36 0.60 29.64 16 13 O -0.64 -35.88 9.65 -4.31 -0.04 -35.92 16 14 C -0.61 -34.51 9.19 24.83 0.23 -34.28 16 15 H 0.07 4.06 6.26 -2.91 -0.02 4.04 16 16 C 0.03 1.71 5.52 85.31 0.47 2.18 16 17 N -0.85 -49.36 13.64 21.84 0.30 -49.07 16 18 Si 1.16 61.71 25.91 68.60 1.78 63.48 16 19 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 20 H -0.30 -16.26 6.87 99.48 0.68 -15.58 16 21 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 22 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 0.96 7.31 -2.39 -0.02 0.95 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.85 6.29 -2.39 -0.02 1.84 16 26 H 0.02 0.64 6.82 -2.38 -0.02 0.62 16 27 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.04 1.04 7.71 -2.39 -0.02 1.02 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.06 2.46 5.84 -2.39 -0.01 2.45 16 32 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.09 2.67 6.10 -2.39 -0.01 2.66 16 34 H 0.05 2.24 6.14 -2.39 -0.01 2.22 16 35 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.09 2.31 8.03 -2.39 -0.02 2.29 16 37 H 0.05 1.99 6.32 -2.39 -0.02 1.97 16 38 H 0.28 15.52 8.72 -92.71 -0.81 14.71 16 Total: -1.00 -65.22 290.59 1.21 -64.01 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 0.97 Total: 3.00 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.04 Total: 1.81 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -6.54 Total: -96.38 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.04 Total: -35.92 kcal Atomic # 14 Polarization: 61.71 SS G_CDS: 1.78 Total: 63.48 kcal Total: -65.22 1.21 -64.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092630761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.983 kcal (2) G-P(sol) polarization free energy of solvation -65.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds