Wall clock time and date at job start Mon Mar 30 2020 03:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47151 * 2 1 4 4 C 1.50697 * 109.47084 * 120.00473 * 2 1 3 5 5 H 1.08000 * 120.00433 * 114.58596 * 4 2 1 6 6 C 1.37883 * 120.00013 * 294.59108 * 4 2 1 7 7 N 1.31507 * 119.99923 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99778 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46956 * 90.00144 * 8 6 4 10 10 H 1.48501 * 109.47273 * 210.00192 * 8 6 4 11 11 H 1.48503 * 109.47354 * 330.00111 * 8 6 4 12 12 N 1.46907 * 109.46847 * 240.00376 * 2 1 3 13 13 C 1.47186 * 110.99763 * 285.96650 * 12 2 1 14 14 C 1.52981 * 108.85684 * 167.71252 * 13 12 2 15 15 N 1.46017 * 110.03895 * 50.21368 * 14 13 12 16 16 C 1.46496 * 118.53301 * 161.86313 * 15 14 13 17 17 C 1.33714 * 122.92814 * 341.84216 * 15 14 13 18 18 O 1.21280 * 118.62624 * 181.68200 * 17 15 14 19 19 C 1.46833 * 111.10292 * 162.94874 * 12 2 1 20 20 C 1.52996 * 109.23519 * 53.36705 * 19 12 2 21 21 C 1.52997 * 109.34240 * 293.69124 * 19 12 2 22 22 H 1.09006 * 109.47511 * 185.14464 * 1 2 3 23 23 H 1.09001 * 109.47127 * 305.14757 * 1 2 3 24 24 H 1.09001 * 109.47150 * 65.14557 * 1 2 3 25 25 H 0.97008 * 119.99638 * 179.97438 * 7 6 4 26 26 H 1.09006 * 109.59629 * 47.86419 * 13 12 2 27 27 H 1.09000 * 109.59917 * 287.56390 * 13 12 2 28 28 H 1.08997 * 109.38234 * 170.38819 * 14 13 12 29 29 H 1.09003 * 109.37312 * 290.04553 * 14 13 12 30 30 H 1.08998 * 109.47411 * 90.00654 * 16 15 14 31 31 H 1.09005 * 109.47092 * 210.00082 * 16 15 14 32 32 H 1.08992 * 109.47640 * 330.00184 * 16 15 14 33 33 H 1.09002 * 109.46931 * 175.15789 * 20 19 12 34 34 H 1.08997 * 109.47428 * 295.16060 * 20 19 12 35 35 H 1.09000 * 109.47306 * 55.16394 * 20 19 12 36 36 H 1.09003 * 109.47510 * 299.37639 * 21 19 12 37 37 H 1.09005 * 109.47021 * 59.37633 * 21 19 12 38 38 H 1.09000 * 109.47235 * 179.37440 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5792 -1.6368 1.1337 6 6 1.7936 -0.1781 2.4797 7 7 2.2324 -0.7979 3.5533 8 14 0.8482 1.4243 2.6469 9 1 -0.6029 1.1326 2.7671 10 1 1.3099 2.1473 3.8591 11 1 1.0860 2.2669 1.4475 12 7 2.0196 -0.6925 -1.1996 13 6 1.8390 -2.1482 -1.0788 14 6 2.0707 -2.7904 -2.4479 15 7 3.3299 -2.3173 -3.0158 16 6 3.9391 -3.0856 -4.1042 17 6 3.9516 -1.2138 -2.5870 18 8 4.9789 -0.8753 -3.1356 19 6 3.4306 -0.3756 -1.4540 20 6 4.2471 -0.6627 -0.1924 21 6 3.5600 1.1052 -1.8167 22 1 -0.3634 -1.0236 0.0922 23 1 -0.3633 0.5916 0.8403 24 1 -0.3633 0.4319 -0.9325 25 1 2.0648 -0.4230 4.4322 26 1 0.8255 -2.3641 -0.7406 27 1 2.5564 -2.5474 -0.3618 28 1 2.1084 -3.8741 -2.3373 29 1 1.2507 -2.5249 -3.1152 30 1 3.5701 -2.7159 -5.0609 31 1 5.0228 -2.9743 -4.0653 32 1 3.6779 -4.1383 -3.9964 33 1 5.3059 -0.5110 -0.4026 34 1 3.9345 0.0124 0.6042 35 1 4.0829 -1.6940 0.1198 36 1 2.9816 1.3106 -2.7175 37 1 3.1823 1.7147 -0.9956 38 1 4.6081 1.3453 -1.9952 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094865860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:38 Heat of formation + Delta-G solvation = -7.571801 kcal Electronic energy + Delta-G solvation = -19119.818026 eV Core-core repulsion = 16384.268430 eV Total energy + Delta-G solvation = -2735.549596 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49659 -37.50667 -35.58063 -33.08420 -31.60943 -30.42641 -27.39795 -26.96198 -26.63308 -24.88339 -22.97547 -21.80443 -19.63615 -17.51519 -16.88441 -16.45052 -16.01679 -15.45427 -14.85629 -14.46681 -13.79964 -13.55397 -13.25306 -12.82373 -12.55615 -12.40469 -12.23893 -12.13894 -11.63952 -11.60274 -11.43783 -11.26792 -11.00493 -10.97325 -10.81716 -10.42169 -10.28600 -9.98379 -9.64078 -9.30555 -8.97317 -8.60022 -8.42187 -7.44011 -6.17412 -4.15528 3.06968 3.21174 3.32082 3.33088 3.34193 4.31746 4.57746 4.91651 5.13151 5.23791 5.42378 5.50815 5.62921 5.66932 5.73901 5.77758 5.91914 6.13775 6.28057 6.35534 6.38093 6.42507 6.48419 6.54459 6.59901 6.60632 6.70099 6.81430 7.02150 7.07897 7.27785 7.47200 7.71024 7.85615 7.95395 8.36613 8.57262 8.81986 9.43746 10.93953 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034340 B = 0.008777 C = 0.008435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.186019 B = 3189.478915 C = 3318.590813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 H 0.047 0.953 4 C -0.544 4.544 5 H 0.087 0.913 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.878 3.122 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.264 1.264 12 N -0.516 5.516 13 C 0.040 3.960 14 C 0.117 3.883 15 N -0.609 5.609 16 C 0.081 3.919 17 C 0.534 3.466 18 O -0.559 6.559 19 C 0.101 3.899 20 C -0.159 4.159 21 C -0.123 4.123 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.036 0.964 25 H 0.264 0.736 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -2.383 -10.186 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.582 4.582 5 H 0.105 0.895 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.707 3.293 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.189 1.189 12 N -0.241 5.241 13 C -0.089 4.089 14 C -0.006 4.006 15 N -0.342 5.342 16 C -0.062 4.062 17 C 0.323 3.677 18 O -0.438 6.438 19 C 0.008 3.992 20 C -0.217 4.217 21 C -0.181 4.181 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.033 -2.032 -10.682 10.923 hybrid contribution -0.246 0.348 1.013 1.099 sum -1.279 -1.684 -9.669 9.898 Atomic orbital electron populations 1.22034 0.98174 1.00728 0.98649 1.19881 0.91773 0.95419 0.86917 0.93504 1.21766 1.36364 1.10506 0.89596 0.89515 1.24926 0.95131 0.96882 0.95855 1.69895 1.45850 1.39332 0.98137 0.86962 0.80267 0.84565 0.77461 1.20455 1.22288 1.18896 1.62997 1.14600 1.06911 1.39546 1.22385 1.03388 0.89558 0.93559 1.21688 0.84894 0.98053 0.95998 1.47402 1.24130 1.26120 1.36520 1.21609 0.99858 0.95036 0.89666 1.20366 0.83397 0.80241 0.83696 1.90612 1.25021 1.70322 1.57796 1.20958 0.90043 0.95325 0.92891 1.22652 0.97488 1.04161 0.97426 1.21694 1.01801 0.92899 1.01661 0.93074 0.94121 0.94487 0.92601 0.88839 0.92353 0.91193 0.91694 0.93156 0.90759 0.91674 0.94378 0.87515 0.92296 0.92692 0.91259 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.74 37.16 0.32 -2.44 16 2 C 0.17 3.58 1.43 -68.86 -0.10 3.49 16 3 H 0.05 1.06 4.60 -51.93 -0.24 0.82 16 4 C -0.54 -13.38 5.44 -34.44 -0.19 -13.56 16 5 H 0.09 2.29 4.56 -52.49 -0.24 2.05 16 6 C 0.08 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.89 -25.50 13.96 55.43 0.77 -24.72 16 8 Si 0.88 20.49 24.63 -169.99 -4.19 16.30 16 9 H -0.28 -6.40 6.92 56.52 0.39 -6.01 16 10 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -5.91 6.39 56.52 0.36 -5.55 16 12 N -0.52 -9.93 4.36 -213.87 -0.93 -10.86 16 13 C 0.04 0.69 4.54 -3.68 -0.02 0.68 16 14 C 0.12 1.67 6.63 -4.31 -0.03 1.64 16 15 N -0.61 -9.86 3.23 -182.48 -0.59 -10.45 16 16 C 0.08 1.06 10.29 59.84 0.62 1.67 16 17 C 0.53 10.27 6.37 -11.67 -0.07 10.20 16 18 O -0.56 -11.90 15.58 5.56 0.09 -11.81 16 19 C 0.10 1.96 0.64 -133.01 -0.09 1.88 16 20 C -0.16 -3.30 6.82 37.16 0.25 -3.05 16 21 C -0.12 -2.24 8.17 37.16 0.30 -1.94 16 22 H 0.05 0.99 6.86 -51.93 -0.36 0.63 16 23 H 0.04 0.85 4.09 -51.93 -0.21 0.63 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.09 1.60 6.59 -51.93 -0.34 1.25 16 27 H 0.06 1.15 4.83 -51.93 -0.25 0.90 16 28 H 0.07 0.82 7.98 -51.93 -0.41 0.41 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.05 7.26 -51.93 -0.38 0.68 16 32 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.11 2.44 5.80 -51.93 -0.30 2.14 16 35 H 0.06 1.28 5.31 -51.93 -0.28 1.00 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.27 6.25 -51.93 -0.32 0.94 16 38 H 0.06 1.13 7.82 -51.93 -0.41 0.73 16 LS Contribution 275.59 15.07 4.15 4.15 Total: -1.00 -28.90 275.59 -5.24 -34.13 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.45 Total: 2.80 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 0.91 Total: 0.45 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.75 Total: -46.03 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.19 Total: 16.30 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.90 -5.24 -34.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094865860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.563 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds