Wall clock time and date at job start Mon Mar 30 2020 03:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47151 * 2 1 4 4 C 1.50697 * 109.47084 * 120.00473 * 2 1 3 5 5 H 1.08000 * 120.00433 * 114.58596 * 4 2 1 6 6 C 1.37883 * 120.00013 * 294.59108 * 4 2 1 7 7 N 1.31507 * 119.99923 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99778 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46956 * 90.00144 * 8 6 4 10 10 H 1.48501 * 109.47273 * 210.00192 * 8 6 4 11 11 H 1.48503 * 109.47354 * 330.00111 * 8 6 4 12 12 N 1.46907 * 109.46847 * 240.00376 * 2 1 3 13 13 C 1.47186 * 110.99763 * 285.96650 * 12 2 1 14 14 C 1.52981 * 108.85684 * 167.71252 * 13 12 2 15 15 N 1.46017 * 110.03895 * 50.21368 * 14 13 12 16 16 C 1.46496 * 118.53301 * 161.86313 * 15 14 13 17 17 C 1.33714 * 122.92814 * 341.84216 * 15 14 13 18 18 O 1.21280 * 118.62624 * 181.68200 * 17 15 14 19 19 C 1.46833 * 111.10292 * 162.94874 * 12 2 1 20 20 C 1.52996 * 109.23519 * 53.36705 * 19 12 2 21 21 C 1.52997 * 109.34240 * 293.69124 * 19 12 2 22 22 H 1.09006 * 109.47511 * 185.14464 * 1 2 3 23 23 H 1.09001 * 109.47127 * 305.14757 * 1 2 3 24 24 H 1.09001 * 109.47150 * 65.14557 * 1 2 3 25 25 H 0.97008 * 119.99638 * 179.97438 * 7 6 4 26 26 H 1.09006 * 109.59629 * 47.86419 * 13 12 2 27 27 H 1.09000 * 109.59917 * 287.56390 * 13 12 2 28 28 H 1.08997 * 109.38234 * 170.38819 * 14 13 12 29 29 H 1.09003 * 109.37312 * 290.04553 * 14 13 12 30 30 H 1.08998 * 109.47411 * 90.00654 * 16 15 14 31 31 H 1.09005 * 109.47092 * 210.00082 * 16 15 14 32 32 H 1.08992 * 109.47640 * 330.00184 * 16 15 14 33 33 H 1.09002 * 109.46931 * 175.15789 * 20 19 12 34 34 H 1.08997 * 109.47428 * 295.16060 * 20 19 12 35 35 H 1.09000 * 109.47306 * 55.16394 * 20 19 12 36 36 H 1.09003 * 109.47510 * 299.37639 * 21 19 12 37 37 H 1.09005 * 109.47021 * 59.37633 * 21 19 12 38 38 H 1.09000 * 109.47235 * 179.37440 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5792 -1.6368 1.1337 6 6 1.7936 -0.1781 2.4797 7 7 2.2324 -0.7979 3.5533 8 14 0.8482 1.4243 2.6469 9 1 -0.6029 1.1326 2.7671 10 1 1.3099 2.1473 3.8591 11 1 1.0860 2.2669 1.4475 12 7 2.0196 -0.6925 -1.1996 13 6 1.8390 -2.1482 -1.0788 14 6 2.0707 -2.7904 -2.4479 15 7 3.3299 -2.3173 -3.0158 16 6 3.9391 -3.0856 -4.1042 17 6 3.9516 -1.2138 -2.5870 18 8 4.9789 -0.8753 -3.1356 19 6 3.4306 -0.3756 -1.4540 20 6 4.2471 -0.6627 -0.1924 21 6 3.5600 1.1052 -1.8167 22 1 -0.3634 -1.0236 0.0922 23 1 -0.3633 0.5916 0.8403 24 1 -0.3633 0.4319 -0.9325 25 1 2.0648 -0.4230 4.4322 26 1 0.8255 -2.3641 -0.7406 27 1 2.5564 -2.5474 -0.3618 28 1 2.1084 -3.8741 -2.3373 29 1 1.2507 -2.5249 -3.1152 30 1 3.5701 -2.7159 -5.0609 31 1 5.0228 -2.9743 -4.0653 32 1 3.6779 -4.1383 -3.9964 33 1 5.3059 -0.5110 -0.4026 34 1 3.9345 0.0124 0.6042 35 1 4.0829 -1.6940 0.1198 36 1 2.9816 1.3106 -2.7175 37 1 3.1823 1.7147 -0.9956 38 1 4.6081 1.3453 -1.9952 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094865860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:38 Heat of formation + Delta-G solvation = -28.677208 kcal Electronic energy + Delta-G solvation = -19120.733225 eV Core-core repulsion = 16384.268430 eV Total energy + Delta-G solvation = -2736.464795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.97179 -39.07934 -36.93603 -34.91128 -33.34867 -31.89970 -28.81500 -28.65502 -27.90885 -26.69088 -24.44198 -23.28861 -21.28678 -19.16328 -18.45289 -18.08640 -17.41870 -16.79729 -16.57095 -16.03238 -15.46728 -15.01663 -14.73754 -14.56479 -14.10393 -13.81920 -13.68399 -13.51392 -13.23069 -13.17184 -12.90371 -12.74817 -12.66072 -12.56760 -12.40152 -12.07865 -11.87735 -11.67237 -11.43563 -11.05466 -10.71203 -10.49202 -9.68407 -9.08438 -8.21284 -6.20200 1.35155 1.41571 1.48395 1.58552 2.07415 2.37680 3.04008 3.13962 3.52737 3.93311 4.06865 4.16728 4.36732 4.42961 4.48620 4.62811 4.65593 4.73006 4.77062 4.84467 4.89494 4.90946 4.93408 5.00946 5.04368 5.09581 5.23136 5.32549 5.45709 5.48576 5.52251 5.64337 6.13693 6.25228 6.39493 6.43617 6.81870 7.13791 7.41696 8.93024 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034340 B = 0.008777 C = 0.008435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.186019 B = 3189.478915 C = 3318.590813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.168 3.832 3 H 0.041 0.959 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.021 3.979 7 N -0.945 5.945 8 Si 0.927 3.073 9 H -0.269 1.269 10 H -0.306 1.306 11 H -0.246 1.246 12 N -0.507 5.507 13 C 0.037 3.963 14 C 0.121 3.879 15 N -0.607 5.607 16 C 0.078 3.922 17 C 0.528 3.472 18 O -0.587 6.587 19 C 0.097 3.903 20 C -0.145 4.145 21 C -0.118 4.118 22 H 0.055 0.945 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.261 0.739 26 H 0.099 0.901 27 H 0.031 0.969 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 -2.595 -12.443 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.060 3.940 3 H 0.058 0.942 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.177 4.177 7 N -0.586 5.586 8 Si 0.755 3.245 9 H -0.195 1.195 10 H -0.234 1.234 11 H -0.170 1.170 12 N -0.231 5.231 13 C -0.091 4.091 14 C -0.001 4.001 15 N -0.338 5.338 16 C -0.063 4.063 17 C 0.316 3.684 18 O -0.467 6.467 19 C 0.003 3.997 20 C -0.204 4.204 21 C -0.176 4.176 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.049 0.951 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.504 -2.269 -12.980 13.413 hybrid contribution 0.253 0.307 1.662 1.708 sum -2.251 -1.962 -11.319 11.706 Atomic orbital electron populations 1.21940 0.96377 1.01192 0.99640 1.19806 0.93089 0.94816 0.86278 0.94160 1.21969 1.34129 1.09175 0.90716 0.92118 1.25602 0.96522 0.99820 0.95770 1.70033 1.48586 1.41355 0.98597 0.86147 0.79414 0.81427 0.77482 1.19491 1.23450 1.17033 1.63049 1.14293 1.07961 1.37831 1.22445 1.02908 0.88438 0.95347 1.21811 0.84649 0.99601 0.94075 1.47523 1.24411 1.25168 1.36734 1.21820 0.98814 0.96639 0.89072 1.20205 0.83369 0.81151 0.83645 1.90599 1.26139 1.71305 1.58698 1.20996 0.89779 0.96432 0.92449 1.22425 0.97942 1.02360 0.97645 1.21646 1.02039 0.92043 1.01901 0.92629 0.94905 0.91953 0.93003 0.88274 0.95126 0.87810 0.89428 0.91745 0.92332 0.88141 0.94207 0.90043 0.93870 0.91634 0.91601 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.74 71.98 0.63 -4.37 16 2 C 0.17 6.98 1.43 44.17 0.06 7.04 16 3 H 0.04 1.76 4.60 -2.39 -0.01 1.75 16 4 C -0.52 -25.86 5.44 25.60 0.14 -25.72 16 5 H 0.06 3.31 4.56 -2.91 -0.01 3.30 16 6 C 0.02 1.11 5.45 84.66 0.46 1.57 16 7 N -0.94 -55.54 13.96 21.45 0.30 -55.24 16 8 Si 0.93 42.02 24.63 68.60 1.69 43.71 16 9 H -0.27 -11.72 6.92 99.48 0.69 -11.03 16 10 H -0.31 -14.34 7.11 99.48 0.71 -13.64 16 11 H -0.25 -10.35 6.39 99.48 0.64 -9.71 16 12 N -0.51 -18.65 4.36 -830.54 -3.62 -22.28 16 13 C 0.04 1.22 4.54 86.24 0.39 1.62 16 14 C 0.12 3.00 6.63 86.46 0.57 3.58 16 15 N -0.61 -17.93 3.23 -850.21 -2.74 -20.67 16 16 C 0.08 1.77 10.29 127.77 1.32 3.09 16 17 C 0.53 19.53 6.37 87.68 0.56 20.09 16 18 O -0.59 -24.39 15.58 -3.03 -0.05 -24.44 16 19 C 0.10 3.68 0.64 2.65 0.00 3.68 16 20 C -0.15 -6.15 6.82 71.98 0.49 -5.66 16 21 C -0.12 -4.20 8.17 71.98 0.59 -3.61 16 22 H 0.05 2.00 6.86 -2.38 -0.02 1.99 16 23 H 0.03 1.27 4.09 -2.39 -0.01 1.26 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 26 H 0.10 3.16 6.59 -2.38 -0.02 3.15 16 27 H 0.03 1.20 4.83 -2.39 -0.01 1.19 16 28 H 0.10 1.95 7.98 -2.39 -0.02 1.94 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.54 7.26 -2.38 -0.02 1.52 16 32 H 0.10 1.57 7.92 -2.39 -0.02 1.55 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 3.84 5.80 -2.39 -0.01 3.82 16 35 H 0.04 1.93 5.31 -2.39 -0.01 1.92 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.35 6.25 -2.38 -0.01 2.33 16 38 H 0.06 2.23 7.82 -2.39 -0.02 2.21 16 Total: -1.00 -63.00 275.59 1.76 -61.24 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.97 Total: 16.37 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.21 Total: 1.30 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -6.07 Total: -98.18 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.69 Total: 43.71 kcal Total: -63.00 1.76 -61.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094865860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.567 kcal (2) G-P(sol) polarization free energy of solvation -63.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds