Wall clock time and date at job start Mon Mar 30 2020 03:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47103 * 2 1 4 4 C 1.50698 * 109.46858 * 239.99780 * 2 1 3 5 5 H 1.08004 * 120.00231 * 239.99755 * 4 2 1 6 6 C 1.37886 * 119.99938 * 60.00380 * 4 2 1 7 7 N 1.31510 * 119.99506 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99884 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47443 * 300.00272 * 8 6 4 11 11 H 1.48503 * 109.47310 * 60.00195 * 8 6 4 12 12 N 1.46899 * 109.47037 * 120.00247 * 2 1 3 13 13 C 1.47191 * 110.99973 * 36.56346 * 12 2 1 14 14 C 1.53003 * 108.71364 * 167.62394 * 13 12 2 15 15 N 1.46010 * 110.04237 * 50.30375 * 14 13 12 16 16 C 1.46494 * 118.53502 * 161.86258 * 15 14 13 17 17 C 1.33722 * 122.92645 * 341.83901 * 15 14 13 18 18 O 1.21276 * 118.62222 * 181.68854 * 17 15 14 19 19 C 1.46905 * 110.99844 * 273.67327 * 12 2 1 20 20 C 1.53002 * 109.38452 * 293.82064 * 19 12 2 21 21 C 1.52993 * 109.38945 * 53.61241 * 19 12 2 22 22 H 1.08999 * 109.47257 * 180.53040 * 1 2 3 23 23 H 1.09003 * 109.47139 * 300.53068 * 1 2 3 24 24 H 1.09002 * 109.47079 * 60.53199 * 1 2 3 25 25 H 0.97007 * 119.99569 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.59407 * 287.40362 * 13 12 2 27 27 H 1.08996 * 109.59769 * 47.86435 * 13 12 2 28 28 H 1.08996 * 109.37505 * 290.12743 * 14 13 12 29 29 H 1.09000 * 109.37182 * 170.48105 * 14 13 12 30 30 H 1.08999 * 109.47261 * 179.97438 * 16 15 14 31 31 H 1.09007 * 109.47314 * 299.97782 * 16 15 14 32 32 H 1.08996 * 109.47574 * 59.97583 * 16 15 14 33 33 H 1.09000 * 109.47335 * 59.99804 * 20 19 12 34 34 H 1.08997 * 109.47170 * 180.02562 * 20 19 12 35 35 H 1.08999 * 109.47109 * 300.00116 * 20 19 12 36 36 H 1.09006 * 109.46949 * 51.91654 * 21 19 12 37 37 H 1.08995 * 109.47443 * 171.91862 * 21 19 12 38 38 H 1.09007 * 109.46916 * 291.92174 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 1.8278 -0.4192 -5.2204 10 1 3.8074 -1.1192 -4.0078 11 1 1.8278 -2.5198 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 1.1549 -1.8341 1.5393 14 6 1.8655 -2.6934 2.5870 15 7 2.3320 -1.8559 3.6883 16 6 2.6696 -2.4977 4.9612 17 6 2.4653 -0.5292 3.5866 18 8 2.8891 0.0869 4.5414 19 6 2.1123 0.2299 2.3390 20 6 3.1926 1.2765 2.0586 21 6 0.7663 0.9298 2.5366 22 1 -0.3634 -1.0276 0.0095 23 1 -0.3633 0.5221 0.8852 24 1 -0.3633 0.5056 -0.8947 25 1 0.7081 1.1609 -3.4844 26 1 0.2109 -1.4696 1.9444 27 1 0.9665 -2.4289 0.6456 28 1 2.7177 -3.1935 2.1269 29 1 1.1728 -3.4424 2.9705 30 1 2.9987 -1.7412 5.6735 31 1 1.7910 -3.0093 5.3544 32 1 3.4701 -3.2202 4.8028 33 1 2.9333 1.8343 1.1588 34 1 3.2628 1.9615 2.9035 35 1 4.1516 0.7790 1.9140 36 1 -0.0268 0.1839 2.5895 37 1 0.7877 1.5037 3.4629 38 1 0.5789 1.6004 1.6979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094865861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:41 Heat of formation + Delta-G solvation = -7.016279 kcal Electronic energy + Delta-G solvation = -18923.776596 eV Core-core repulsion = 16188.251089 eV Total energy + Delta-G solvation = -2735.525507 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57959 -37.53535 -35.61624 -33.25007 -31.36037 -29.87707 -27.67625 -26.79269 -26.58062 -24.92060 -23.05938 -21.65034 -19.86926 -17.36164 -16.98518 -16.26165 -15.76626 -15.37864 -14.71796 -14.64077 -13.72786 -13.66249 -13.50585 -12.82068 -12.70561 -12.38705 -12.15453 -11.96781 -11.70816 -11.45111 -11.23700 -11.02575 -11.01586 -10.80518 -10.70085 -10.61391 -10.14295 -10.06900 -10.03635 -9.16477 -8.85491 -8.45122 -8.35887 -7.38203 -6.03004 -4.06636 2.98627 3.29827 3.30921 3.35828 3.38580 4.36136 4.70203 4.83852 5.20232 5.28541 5.40780 5.45094 5.51440 5.56549 5.62371 5.69024 5.91753 6.05674 6.07847 6.24223 6.31571 6.36634 6.41567 6.54331 6.62217 6.72197 6.77999 6.85345 7.06076 7.25050 7.59983 7.69777 7.80304 8.06796 8.27545 8.43298 8.56178 8.98936 9.58247 11.03519 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033838 B = 0.007825 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.267591 B = 3577.579226 C = 3867.253589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.209 3.791 3 H 0.046 0.954 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.289 1.289 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.514 5.514 13 C 0.040 3.960 14 C 0.117 3.883 15 N -0.608 5.608 16 C 0.073 3.927 17 C 0.535 3.465 18 O -0.561 6.561 19 C 0.094 3.906 20 C -0.123 4.123 21 C -0.171 4.171 22 H 0.031 0.969 23 H 0.028 0.972 24 H 0.087 0.913 25 H 0.261 0.739 26 H 0.039 0.961 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 -4.934 9.245 10.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.104 3.896 3 H 0.063 0.937 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.215 1.215 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.239 5.239 13 C -0.089 4.089 14 C -0.006 4.006 15 N -0.340 5.340 16 C -0.070 4.070 17 C 0.324 3.676 18 O -0.439 6.439 19 C 0.001 3.999 20 C -0.180 4.180 21 C -0.230 4.230 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.106 0.894 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.107 -4.682 9.475 10.569 hybrid contribution -0.600 -0.371 -0.820 1.081 sum -0.494 -5.052 8.656 10.035 Atomic orbital electron populations 1.22893 1.00224 0.99768 1.01918 1.19414 0.90166 0.94730 0.85319 0.93655 1.21053 1.30483 1.12556 0.89387 0.91997 1.24914 0.95272 0.95169 0.98930 1.69868 1.37002 1.23054 1.23526 0.86586 0.79226 0.79563 0.82146 1.21472 1.20301 1.20422 1.63079 1.49995 1.07725 1.03070 1.22438 0.94131 0.94242 0.98097 1.21657 0.98963 0.93199 0.86790 1.47364 1.66000 1.07079 1.13580 1.21674 1.00045 0.98497 0.86766 1.20307 0.76181 0.81697 0.89424 1.90601 1.46893 1.67197 1.39217 1.21092 0.96576 0.93296 0.88957 1.21695 0.97422 0.97030 1.01887 1.22682 0.96478 1.01122 1.02692 0.95039 0.95362 0.89405 0.92954 0.94282 0.88095 0.91191 0.91304 0.89505 0.92715 0.92552 0.90761 0.92121 0.92151 0.92220 0.92731 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.21 7.44 37.16 0.28 -3.93 16 2 C 0.21 4.87 1.66 -68.86 -0.11 4.75 16 3 H 0.05 1.16 5.55 -51.93 -0.29 0.87 16 4 C -0.50 -12.89 8.42 -34.44 -0.29 -13.18 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -24.50 11.31 55.43 0.63 -23.88 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 N -0.51 -10.40 4.30 -213.81 -0.92 -11.32 16 13 C 0.04 0.69 4.04 -3.66 -0.01 0.67 16 14 C 0.12 1.70 6.64 -4.31 -0.03 1.67 16 15 N -0.61 -9.74 3.23 -182.47 -0.59 -10.33 16 16 C 0.07 0.93 10.55 59.84 0.63 1.57 16 17 C 0.54 10.04 6.35 -11.67 -0.07 9.97 16 18 O -0.56 -11.55 15.30 5.56 0.09 -11.47 16 19 C 0.09 1.79 0.62 -132.97 -0.08 1.70 16 20 C -0.12 -2.31 8.16 37.16 0.30 -2.00 16 21 C -0.17 -3.03 6.58 37.15 0.24 -2.78 16 22 H 0.03 0.67 6.33 -51.93 -0.33 0.34 16 23 H 0.03 0.56 4.03 -51.93 -0.21 0.35 16 24 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.04 0.67 5.27 -51.93 -0.27 0.40 16 27 H 0.10 1.83 7.23 -51.93 -0.38 1.45 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.09 1.22 6.67 -51.93 -0.35 0.88 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.44 6.24 -51.93 -0.32 1.12 16 34 H 0.06 1.07 7.80 -51.93 -0.41 0.66 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.03 5.31 -51.93 -0.28 0.75 16 37 H 0.05 0.92 8.12 -51.93 -0.42 0.49 16 38 H 0.08 1.56 5.94 -51.92 -0.31 1.25 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -28.79 282.13 -6.34 -35.13 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.53 Total: 1.99 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 0.76 Total: -0.11 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.88 Total: -45.52 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.79 -6.34 -35.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094865861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.111 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds