Wall clock time and date at job start Mon Mar 30 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47103 * 2 1 4 4 C 1.50698 * 109.46858 * 239.99780 * 2 1 3 5 5 H 1.08004 * 120.00231 * 239.99755 * 4 2 1 6 6 C 1.37886 * 119.99938 * 60.00380 * 4 2 1 7 7 N 1.31510 * 119.99506 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99884 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47443 * 300.00272 * 8 6 4 11 11 H 1.48503 * 109.47310 * 60.00195 * 8 6 4 12 12 N 1.46899 * 109.47037 * 120.00247 * 2 1 3 13 13 C 1.47191 * 110.99973 * 36.56346 * 12 2 1 14 14 C 1.53003 * 108.71364 * 167.62394 * 13 12 2 15 15 N 1.46010 * 110.04237 * 50.30375 * 14 13 12 16 16 C 1.46494 * 118.53502 * 161.86258 * 15 14 13 17 17 C 1.33722 * 122.92645 * 341.83901 * 15 14 13 18 18 O 1.21276 * 118.62222 * 181.68854 * 17 15 14 19 19 C 1.46905 * 110.99844 * 273.67327 * 12 2 1 20 20 C 1.53002 * 109.38452 * 293.82064 * 19 12 2 21 21 C 1.52993 * 109.38945 * 53.61241 * 19 12 2 22 22 H 1.08999 * 109.47257 * 180.53040 * 1 2 3 23 23 H 1.09003 * 109.47139 * 300.53068 * 1 2 3 24 24 H 1.09002 * 109.47079 * 60.53199 * 1 2 3 25 25 H 0.97007 * 119.99569 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.59407 * 287.40362 * 13 12 2 27 27 H 1.08996 * 109.59769 * 47.86435 * 13 12 2 28 28 H 1.08996 * 109.37505 * 290.12743 * 14 13 12 29 29 H 1.09000 * 109.37182 * 170.48105 * 14 13 12 30 30 H 1.08999 * 109.47261 * 179.97438 * 16 15 14 31 31 H 1.09007 * 109.47314 * 299.97782 * 16 15 14 32 32 H 1.08996 * 109.47574 * 59.97583 * 16 15 14 33 33 H 1.09000 * 109.47335 * 59.99804 * 20 19 12 34 34 H 1.08997 * 109.47170 * 180.02562 * 20 19 12 35 35 H 1.08999 * 109.47109 * 300.00116 * 20 19 12 36 36 H 1.09006 * 109.46949 * 51.91654 * 21 19 12 37 37 H 1.08995 * 109.47443 * 171.91862 * 21 19 12 38 38 H 1.09007 * 109.46916 * 291.92174 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 1.8278 -0.4192 -5.2204 10 1 3.8074 -1.1192 -4.0078 11 1 1.8278 -2.5198 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 1.1549 -1.8341 1.5393 14 6 1.8655 -2.6934 2.5870 15 7 2.3320 -1.8559 3.6883 16 6 2.6696 -2.4977 4.9612 17 6 2.4653 -0.5292 3.5866 18 8 2.8891 0.0869 4.5414 19 6 2.1123 0.2299 2.3390 20 6 3.1926 1.2765 2.0586 21 6 0.7663 0.9298 2.5366 22 1 -0.3634 -1.0276 0.0095 23 1 -0.3633 0.5221 0.8852 24 1 -0.3633 0.5056 -0.8947 25 1 0.7081 1.1609 -3.4844 26 1 0.2109 -1.4696 1.9444 27 1 0.9665 -2.4289 0.6456 28 1 2.7177 -3.1935 2.1269 29 1 1.1728 -3.4424 2.9705 30 1 2.9987 -1.7412 5.6735 31 1 1.7910 -3.0093 5.3544 32 1 3.4701 -3.2202 4.8028 33 1 2.9333 1.8343 1.1588 34 1 3.2628 1.9615 2.9035 35 1 4.1516 0.7790 1.9140 36 1 -0.0268 0.1839 2.5895 37 1 0.7877 1.5037 3.4629 38 1 0.5789 1.6004 1.6979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094865861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:40 Heat of formation + Delta-G solvation = -26.316338 kcal Electronic energy + Delta-G solvation = -18924.613509 eV Core-core repulsion = 16188.251089 eV Total energy + Delta-G solvation = -2736.362420 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.01733 -39.08457 -36.93700 -35.12656 -32.94658 -31.42876 -29.21115 -28.32420 -27.84076 -26.81186 -24.52333 -23.07348 -21.58122 -18.80851 -18.54777 -17.84811 -17.33622 -16.75403 -16.48698 -16.12255 -15.35450 -15.13064 -14.90351 -14.41853 -14.13381 -13.79010 -13.55919 -13.38920 -13.21738 -12.88498 -12.83913 -12.78191 -12.58934 -12.35269 -12.30609 -12.22511 -11.90053 -11.87109 -11.78663 -10.85301 -10.55626 -10.34245 -9.68200 -8.98298 -8.04314 -6.14068 1.46437 1.47840 1.54466 1.55788 2.05790 2.46351 3.14656 3.24548 3.47914 3.89905 4.02709 4.04090 4.29241 4.43299 4.49245 4.61439 4.63321 4.69285 4.74842 4.85224 4.87057 4.93410 4.98393 5.00507 5.02973 5.11248 5.24407 5.30301 5.45699 5.52452 5.75393 5.84534 6.27453 6.35561 6.51086 6.62911 6.97437 7.12729 7.54427 9.00416 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033838 B = 0.007825 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.267591 B = 3577.579226 C = 3867.253589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.217 3.783 3 H 0.017 0.983 4 C -0.507 4.507 5 H 0.055 0.945 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.953 3.047 9 H -0.289 1.289 10 H -0.278 1.278 11 H -0.270 1.270 12 N -0.524 5.524 13 C 0.037 3.963 14 C 0.121 3.879 15 N -0.606 5.606 16 C 0.071 3.929 17 C 0.531 3.469 18 O -0.586 6.586 19 C 0.089 3.911 20 C -0.117 4.117 21 C -0.163 4.163 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.259 0.741 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 -6.800 10.149 12.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.111 3.889 3 H 0.035 0.965 4 C -0.546 4.546 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.215 1.215 10 H -0.203 1.203 11 H -0.195 1.195 12 N -0.249 5.249 13 C -0.092 4.092 14 C -0.001 4.001 15 N -0.337 5.337 16 C -0.071 4.071 17 C 0.319 3.681 18 O -0.466 6.466 19 C -0.004 4.004 20 C -0.175 4.175 21 C -0.222 4.222 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.106 -6.593 10.392 12.308 hybrid contribution -0.517 0.185 -1.059 1.193 sum -0.624 -6.408 9.333 11.338 Atomic orbital electron populations 1.22726 0.99489 0.99942 1.01326 1.19121 0.90528 0.93223 0.86059 0.96475 1.21337 1.30209 1.12383 0.90694 0.92650 1.25596 0.95562 0.95834 1.01512 1.69999 1.37975 1.24184 1.23853 0.85686 0.78494 0.78843 0.78989 1.21464 1.20315 1.19543 1.62957 1.50802 1.08447 1.02669 1.22502 0.94384 0.93431 0.98850 1.21740 0.99779 0.92821 0.85797 1.47479 1.64847 1.06351 1.15042 1.21881 1.02100 0.98303 0.84823 1.20138 0.76473 0.82785 0.88723 1.90591 1.48307 1.67989 1.39751 1.21124 0.97009 0.93358 0.88938 1.21622 0.97143 0.97185 1.01570 1.22563 0.96006 1.01031 1.02555 0.94397 0.93331 0.92453 0.93164 0.93819 0.88935 0.90806 0.87139 0.91108 0.89763 0.90504 0.92111 0.91241 0.93003 0.91504 0.91827 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.82 7.44 71.98 0.54 -7.28 16 2 C 0.22 10.19 1.66 44.17 0.07 10.27 16 3 H 0.02 0.91 5.55 -2.39 -0.01 0.90 16 4 C -0.51 -26.51 8.42 25.60 0.22 -26.30 16 5 H 0.06 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -51.11 11.31 21.45 0.24 -50.87 16 8 Si 0.95 42.55 29.54 68.60 2.03 44.57 16 9 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 N -0.52 -20.88 4.30 -830.35 -3.57 -24.45 16 13 C 0.04 1.20 4.04 86.25 0.35 1.55 16 14 C 0.12 3.10 6.64 86.47 0.57 3.68 16 15 N -0.61 -17.64 3.23 -850.19 -2.74 -20.39 16 16 C 0.07 1.56 10.55 127.77 1.35 2.91 16 17 C 0.53 19.07 6.35 87.68 0.56 19.63 16 18 O -0.59 -23.46 15.30 -3.02 -0.05 -23.51 16 19 C 0.09 3.32 0.62 2.64 0.00 3.32 16 20 C -0.12 -4.47 8.16 71.98 0.59 -3.88 16 21 C -0.16 -5.63 6.58 71.98 0.47 -5.15 16 22 H 0.04 1.58 6.33 -2.39 -0.02 1.57 16 23 H 0.05 1.91 4.03 -2.39 -0.01 1.90 16 24 H 0.06 2.92 6.06 -2.39 -0.01 2.90 16 25 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16 26 H 0.04 1.39 5.27 -2.39 -0.01 1.38 16 27 H 0.09 3.20 7.23 -2.39 -0.02 3.18 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.11 2.00 8.12 -2.39 -0.02 1.98 16 30 H 0.07 1.83 6.67 -2.39 -0.02 1.82 16 31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 2.44 6.24 -2.39 -0.01 2.43 16 34 H 0.07 2.47 7.80 -2.39 -0.02 2.45 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.19 5.31 -2.38 -0.01 2.17 16 37 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 38 H 0.07 2.64 5.94 -2.38 -0.01 2.63 16 Total: -1.00 -61.52 282.13 2.13 -59.39 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.05 Total: 15.36 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.16 Total: -0.11 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -6.07 Total: -95.70 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -61.52 2.13 -59.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094865861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.074 kcal (2) G-P(sol) polarization free energy of solvation -61.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds