Wall clock time and date at job start Mon Mar 30 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47053 * 2 1 4 4 C 1.50696 * 109.47168 * 119.99763 * 2 1 3 5 5 H 1.08002 * 119.99815 * 119.99926 * 4 2 1 6 6 C 1.37874 * 120.00610 * 300.00367 * 4 2 1 7 7 N 1.31519 * 119.99558 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00625 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47145 * 59.99465 * 8 6 4 10 10 H 1.48497 * 109.47240 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46842 * 299.99953 * 8 6 4 12 12 N 1.46505 * 109.47183 * 239.99950 * 2 1 3 13 13 C 1.34773 * 119.99647 * 84.99915 * 12 2 1 14 14 O 1.21281 * 120.00690 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99633 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.46561 * 275.00194 * 15 13 12 17 17 C 1.53036 * 109.46123 * 155.02112 * 15 13 12 18 18 C 1.53119 * 109.28085 * 299.18704 * 17 15 13 19 19 C 1.53121 * 109.15216 * 302.32974 * 18 17 15 20 20 C 1.53038 * 109.27795 * 57.65884 * 19 18 17 21 21 N 1.46849 * 109.52274 * 300.82067 * 20 19 18 22 22 H 1.09002 * 109.46948 * 59.99549 * 1 2 3 23 23 H 1.09001 * 109.47510 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47243 * 300.00308 * 1 2 3 25 25 H 0.96996 * 119.99827 * 179.97438 * 7 6 4 26 26 H 0.96997 * 119.99709 * 265.00628 * 12 2 1 27 27 H 1.09002 * 109.47153 * 59.99898 * 16 15 13 28 28 H 1.09001 * 109.46832 * 300.00089 * 16 15 13 29 29 H 1.09004 * 109.47261 * 180.02562 * 16 15 13 30 30 H 1.08995 * 109.50416 * 59.11705 * 17 15 13 31 31 H 1.09005 * 109.50310 * 179.23396 * 17 15 13 32 32 H 1.09003 * 109.52169 * 182.43247 * 18 17 15 33 33 H 1.09001 * 109.53159 * 62.23358 * 18 17 15 34 34 H 1.09001 * 109.50040 * 297.71711 * 19 18 17 35 35 H 1.08997 * 109.53724 * 177.62407 * 19 18 17 36 36 H 1.09001 * 109.46186 * 180.80623 * 20 19 18 37 37 H 1.08995 * 109.45380 * 60.83319 * 20 19 18 38 38 H 1.00903 * 110.99858 * 297.64410 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.8063 -1.1210 4.0082 10 1 1.8269 -0.4199 5.2205 11 1 1.8258 -2.5202 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7285 -3.5874 16 6 4.1799 -0.7279 -3.5869 17 6 2.1401 -0.0069 -4.8370 18 6 0.6091 -0.0273 -4.8433 19 6 0.1258 -1.4795 -4.7937 20 6 0.6940 -2.1586 -3.5455 21 7 2.1612 -2.1133 -3.5870 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7088 1.1613 3.4844 26 1 2.2489 -1.6318 -1.1526 27 1 4.5432 -1.2415 -2.6968 28 1 4.5427 0.3000 -3.5868 29 1 4.5438 -1.2412 -4.4770 30 1 2.4900 1.0253 -4.8293 31 1 2.5147 -0.5121 -5.7273 32 1 0.2422 0.4477 -5.7532 33 1 0.2338 0.5114 -3.9732 34 1 0.4687 -2.0076 -5.6834 35 1 -0.9633 -1.5001 -4.7553 36 1 0.3635 -3.1969 -3.5147 37 1 0.3396 -1.6381 -2.6558 38 1 2.5163 -2.6224 -4.3826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127507419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:58 Heat of formation + Delta-G solvation = -53.333110 kcal Electronic energy + Delta-G solvation = -18550.189044 eV Core-core repulsion = 15812.655088 eV Total energy + Delta-G solvation = -2737.533955 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22057 -37.15628 -34.74594 -32.84261 -32.21803 -31.31124 -28.71562 -26.97544 -25.21568 -23.57938 -22.96018 -21.12630 -20.00035 -18.90985 -16.89058 -15.88702 -15.44871 -15.35282 -14.67984 -14.31001 -14.02750 -13.73646 -13.47607 -13.27447 -12.58090 -12.36916 -11.92503 -11.88215 -11.82769 -11.53184 -11.50605 -11.07110 -10.95837 -10.89968 -10.67752 -10.53649 -10.33431 -10.26806 -10.17044 -8.99634 -8.87354 -8.48585 -8.27007 -7.75471 -6.07140 -4.15789 3.29158 3.33953 3.35628 3.47202 4.12959 4.26955 4.43716 4.85396 4.98420 5.08147 5.15737 5.24880 5.41716 5.53421 5.57766 5.73498 5.83020 5.86416 5.95990 6.05007 6.09200 6.20501 6.25028 6.34973 6.50948 6.86509 7.00303 7.01985 7.20598 7.43426 7.55175 7.66939 7.77705 7.98890 8.21019 8.81048 8.86471 9.27210 9.52466 10.98839 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035249 B = 0.006753 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.168996 B = 4145.154238 C = 4260.450074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.263 3.737 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.696 5.696 13 C 0.518 3.482 14 O -0.560 6.560 15 C 0.091 3.909 16 C -0.134 4.134 17 C -0.128 4.128 18 C -0.125 4.125 19 C -0.155 4.155 20 C 0.045 3.955 21 N -0.670 5.670 22 H 0.012 0.988 23 H 0.026 0.974 24 H 0.089 0.911 25 H 0.264 0.736 26 H 0.397 0.603 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.548 -6.142 -13.418 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.343 5.343 13 C 0.301 3.699 14 O -0.439 6.439 15 C -0.003 4.003 16 C -0.192 4.192 17 C -0.167 4.167 18 C -0.163 4.163 19 C -0.194 4.194 20 C -0.084 4.084 21 N -0.301 5.301 22 H 0.031 0.969 23 H 0.045 0.955 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.231 0.769 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.325 -5.254 -12.554 13.673 hybrid contribution 0.119 -0.638 -0.093 0.655 sum 1.444 -5.891 -12.647 14.026 Atomic orbital electron populations 1.22059 0.98626 0.98960 1.00688 1.18715 0.90911 0.93929 0.80370 0.93647 1.21206 1.32248 1.13113 0.90351 0.92114 1.24886 0.94873 0.94963 0.99011 1.69899 1.36032 1.22516 1.23864 0.86519 0.79170 0.79609 0.81856 1.20205 1.21197 1.20170 1.46512 1.63809 1.14042 1.09934 1.19991 0.78263 0.87000 0.84609 1.90638 1.51794 1.16199 1.85313 1.21233 0.96344 0.88572 0.94188 1.21742 0.92126 1.02652 1.02720 1.21987 0.96327 1.02048 0.96368 1.21616 0.95535 0.96379 1.02742 1.22233 1.01179 0.96903 0.99065 1.22199 0.87083 1.00960 0.98174 1.60633 1.09101 1.12112 1.48245 0.96902 0.95531 0.89261 0.92617 0.76909 0.91116 0.91586 0.92142 0.90473 0.92100 0.92328 0.90458 0.92460 0.91652 0.90539 0.89586 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.82 2.56 -69.08 -0.18 6.65 16 3 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 4 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.68 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.70 -14.99 4.10 -54.93 -0.22 -15.21 16 13 C 0.52 10.52 4.68 -10.99 -0.05 10.47 16 14 O -0.56 -13.48 14.71 5.56 0.08 -13.40 16 15 C 0.09 1.37 0.87 -132.76 -0.12 1.25 16 16 C -0.13 -1.78 8.73 37.16 0.32 -1.46 16 17 C -0.13 -1.77 4.52 -26.65 -0.12 -1.89 16 18 C -0.13 -1.78 5.72 -26.61 -0.15 -1.93 16 19 C -0.15 -1.88 6.08 -26.65 -0.16 -2.04 16 20 C 0.05 0.61 6.23 -3.83 -0.02 0.58 16 21 N -0.67 -8.69 5.57 -101.17 -0.56 -9.26 16 22 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.40 7.93 7.90 -40.82 -0.32 7.61 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.18 7.84 -51.93 -0.41 0.77 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.37 6.58 -51.93 -0.34 1.03 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.44 6.40 -51.93 -0.33 1.11 16 38 H 0.34 3.58 8.79 -39.29 -0.35 3.23 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -29.76 297.85 -7.37 -37.12 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.23 Total: 9.63 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.53 Total: -4.64 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.16 Total: -49.15 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.76 -7.37 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127507419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.211 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds