Wall clock time and date at job start Mon Mar 30 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47053 * 2 1 4 4 C 1.50696 * 109.47168 * 119.99763 * 2 1 3 5 5 H 1.08002 * 119.99815 * 119.99926 * 4 2 1 6 6 C 1.37874 * 120.00610 * 300.00367 * 4 2 1 7 7 N 1.31519 * 119.99558 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00625 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47145 * 59.99465 * 8 6 4 10 10 H 1.48497 * 109.47240 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46842 * 299.99953 * 8 6 4 12 12 N 1.46505 * 109.47183 * 239.99950 * 2 1 3 13 13 C 1.34773 * 119.99647 * 84.99915 * 12 2 1 14 14 O 1.21281 * 120.00690 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99633 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.46561 * 275.00194 * 15 13 12 17 17 C 1.53036 * 109.46123 * 155.02112 * 15 13 12 18 18 C 1.53119 * 109.28085 * 299.18704 * 17 15 13 19 19 C 1.53121 * 109.15216 * 302.32974 * 18 17 15 20 20 C 1.53038 * 109.27795 * 57.65884 * 19 18 17 21 21 N 1.46849 * 109.52274 * 300.82067 * 20 19 18 22 22 H 1.09002 * 109.46948 * 59.99549 * 1 2 3 23 23 H 1.09001 * 109.47510 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47243 * 300.00308 * 1 2 3 25 25 H 0.96996 * 119.99827 * 179.97438 * 7 6 4 26 26 H 0.96997 * 119.99709 * 265.00628 * 12 2 1 27 27 H 1.09002 * 109.47153 * 59.99898 * 16 15 13 28 28 H 1.09001 * 109.46832 * 300.00089 * 16 15 13 29 29 H 1.09004 * 109.47261 * 180.02562 * 16 15 13 30 30 H 1.08995 * 109.50416 * 59.11705 * 17 15 13 31 31 H 1.09005 * 109.50310 * 179.23396 * 17 15 13 32 32 H 1.09003 * 109.52169 * 182.43247 * 18 17 15 33 33 H 1.09001 * 109.53159 * 62.23358 * 18 17 15 34 34 H 1.09001 * 109.50040 * 297.71711 * 19 18 17 35 35 H 1.08997 * 109.53724 * 177.62407 * 19 18 17 36 36 H 1.09001 * 109.46186 * 180.80623 * 20 19 18 37 37 H 1.08995 * 109.45380 * 60.83319 * 20 19 18 38 38 H 1.00903 * 110.99858 * 297.64410 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.8063 -1.1210 4.0082 10 1 1.8269 -0.4199 5.2205 11 1 1.8258 -2.5202 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7285 -3.5874 16 6 4.1799 -0.7279 -3.5869 17 6 2.1401 -0.0069 -4.8370 18 6 0.6091 -0.0273 -4.8433 19 6 0.1258 -1.4795 -4.7937 20 6 0.6940 -2.1586 -3.5455 21 7 2.1612 -2.1133 -3.5870 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7088 1.1613 3.4844 26 1 2.2489 -1.6318 -1.1526 27 1 4.5432 -1.2415 -2.6968 28 1 4.5427 0.3000 -3.5868 29 1 4.5438 -1.2412 -4.4770 30 1 2.4900 1.0253 -4.8293 31 1 2.5147 -0.5121 -5.7273 32 1 0.2422 0.4477 -5.7532 33 1 0.2338 0.5114 -3.9732 34 1 0.4687 -2.0076 -5.6834 35 1 -0.9633 -1.5001 -4.7553 36 1 0.3635 -3.1969 -3.5147 37 1 0.3396 -1.6381 -2.6558 38 1 2.5163 -2.6224 -4.3826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127507419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:58 Heat of formation + Delta-G solvation = -74.759917 kcal Electronic energy + Delta-G solvation = -18551.118180 eV Core-core repulsion = 15812.655088 eV Total energy + Delta-G solvation = -2738.463091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.62282 -38.65007 -36.69030 -34.39966 -33.74828 -32.49796 -30.68247 -28.01855 -27.35653 -25.00040 -24.21352 -22.50359 -21.59795 -20.59243 -18.59665 -17.55824 -17.20346 -16.58250 -16.30642 -15.59836 -15.52157 -15.15207 -14.83183 -14.64310 -14.37633 -13.93059 -13.51469 -13.19471 -12.99051 -12.96221 -12.92108 -12.81393 -12.70057 -12.56755 -12.27947 -12.16265 -12.06171 -11.63454 -11.39495 -11.11993 -10.64292 -10.47209 -9.64209 -9.34763 -8.17221 -6.34970 1.44195 1.46788 1.54638 1.86505 2.36770 2.68196 3.12574 3.16850 3.67321 3.91964 3.96167 4.05743 4.18563 4.36026 4.51209 4.68777 4.71735 4.76070 4.85620 4.89065 4.91792 4.98523 5.04852 5.08335 5.13376 5.15709 5.28161 5.39721 5.43609 5.63118 5.70537 5.85080 5.99245 6.11060 6.55795 6.73301 7.06835 7.33165 7.63584 8.88921 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035249 B = 0.006753 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.168996 B = 4145.154238 C = 4260.450074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.270 3.730 3 H -0.007 1.007 4 C -0.546 4.546 5 H 0.071 0.929 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.263 1.263 12 N -0.692 5.692 13 C 0.512 3.488 14 O -0.605 6.605 15 C 0.101 3.899 16 C -0.132 4.132 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.146 4.146 20 C 0.045 3.955 21 N -0.665 5.665 22 H 0.006 0.994 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.265 0.735 26 H 0.407 0.593 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.028 0.972 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.044 0.956 38 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -8.878 -14.861 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.166 3.834 3 H 0.011 0.989 4 C -0.585 4.585 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.188 1.188 12 N -0.340 5.340 13 C 0.298 3.702 14 O -0.487 6.487 15 C 0.007 3.993 16 C -0.190 4.190 17 C -0.164 4.164 18 C -0.165 4.165 19 C -0.185 4.185 20 C -0.085 4.085 21 N -0.299 5.299 22 H 0.026 0.974 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.242 0.758 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.063 0.937 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.344 -8.030 -14.035 16.339 hybrid contribution -0.220 0.269 0.314 0.469 sum 2.124 -7.760 -13.721 15.906 Atomic orbital electron populations 1.21838 0.98419 0.99151 0.99172 1.18304 0.91015 0.91670 0.82367 0.98926 1.21510 1.32571 1.13477 0.90897 0.91137 1.25819 0.94845 0.95574 1.02341 1.70054 1.37056 1.23972 1.24643 0.85386 0.78678 0.78729 0.77487 1.19544 1.21049 1.18816 1.46272 1.64121 1.14280 1.09328 1.21039 0.76791 0.86655 0.85685 1.90611 1.53398 1.18554 1.86122 1.21105 0.97452 0.89377 0.91362 1.21763 0.90339 1.02486 1.04395 1.22011 0.95992 1.01249 0.97149 1.21611 0.95965 0.97672 1.01293 1.22181 1.01379 0.95289 0.99645 1.22172 0.87294 1.01936 0.97085 1.60534 1.08981 1.10664 1.49702 0.97447 0.94266 0.91595 0.92554 0.75757 0.91887 0.92749 0.87999 0.92554 0.87981 0.90722 0.95300 0.89170 0.91386 0.88084 0.93737 0.81425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.72 9.26 71.98 0.67 -6.05 16 2 C 0.27 14.66 2.56 44.24 0.11 14.77 16 3 H -0.01 -0.46 7.58 -2.39 -0.02 -0.48 16 4 C -0.55 -30.02 8.73 25.60 0.22 -29.80 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 8 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 N -0.69 -30.62 4.10 -446.10 -1.83 -32.45 16 13 C 0.51 21.38 4.68 87.66 0.41 21.79 16 14 O -0.60 -30.84 14.71 -3.03 -0.04 -30.89 16 15 C 0.10 2.90 0.87 2.80 0.00 2.90 16 16 C -0.13 -3.19 8.73 71.98 0.63 -2.56 16 17 C -0.12 -3.21 4.52 30.65 0.14 -3.07 16 18 C -0.13 -3.49 5.72 30.67 0.18 -3.32 16 19 C -0.15 -3.15 6.08 30.65 0.19 -2.96 16 20 C 0.04 1.10 6.23 86.33 0.54 1.64 16 21 N -0.67 -15.30 5.57 -474.00 -2.64 -17.94 16 22 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 23 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 25 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.41 16.23 7.90 -92.71 -0.73 15.50 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.06 1.69 7.84 -2.39 -0.02 1.67 16 31 H 0.10 1.83 8.14 -2.38 -0.02 1.82 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.03 1.06 6.58 -2.39 -0.02 1.04 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.04 1.48 6.40 -2.39 -0.02 1.47 16 38 H 0.36 5.83 8.79 -89.69 -0.79 5.04 16 Total: -1.00 -68.45 297.85 0.82 -67.63 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.47 Total: 27.91 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 3.53 Total: -5.43 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -4.22 Total: -104.16 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.04 Total: -30.89 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -68.45 0.82 -67.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127507419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.134 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds