Wall clock time and date at job start Mon Mar 30 2020 03:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47539 * 2 1 4 4 C 1.50703 * 109.46547 * 119.99524 * 2 1 3 5 5 H 1.08001 * 120.00023 * 120.00472 * 4 2 1 6 6 C 1.37878 * 120.00091 * 299.99726 * 4 2 1 7 7 N 1.31520 * 119.99829 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99933 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47035 * 90.00116 * 8 6 4 10 10 H 1.48500 * 109.47127 * 209.99797 * 8 6 4 11 11 H 1.48496 * 109.47149 * 330.00008 * 8 6 4 12 12 N 1.46501 * 109.47332 * 239.99175 * 2 1 3 13 13 C 1.34773 * 119.99626 * 85.00354 * 12 2 1 14 14 O 1.21288 * 120.00440 * 0.02562 * 13 12 2 15 15 C 1.50704 * 120.00002 * 180.02562 * 13 12 2 16 16 C 1.52994 * 109.46232 * 85.01914 * 15 13 12 17 17 C 1.53041 * 109.46240 * 205.00096 * 15 13 12 18 18 C 1.53120 * 109.27703 * 60.83455 * 17 15 13 19 19 C 1.53119 * 109.16202 * 57.65829 * 18 17 15 20 20 C 1.53044 * 109.27589 * 302.34077 * 19 18 17 21 21 N 1.46847 * 109.51335 * 59.18419 * 20 19 18 22 22 H 1.08996 * 109.47050 * 300.01000 * 1 2 3 23 23 H 1.09005 * 109.46396 * 60.00669 * 1 2 3 24 24 H 1.08996 * 109.47539 * 179.97438 * 1 2 3 25 25 H 0.96994 * 119.99343 * 180.02562 * 7 6 4 26 26 H 0.97000 * 119.99899 * 265.00362 * 12 2 1 27 27 H 1.09001 * 109.47072 * 179.97438 * 16 15 13 28 28 H 1.08995 * 109.47111 * 299.98196 * 16 15 13 29 29 H 1.08999 * 109.46991 * 59.98114 * 16 15 13 30 30 H 1.08996 * 109.50341 * 300.89439 * 17 15 13 31 31 H 1.08996 * 109.50165 * 180.76969 * 17 15 13 32 32 H 1.08993 * 109.52850 * 297.74913 * 18 17 15 33 33 H 1.09003 * 109.57279 * 177.58700 * 18 17 15 34 34 H 1.09000 * 109.50507 * 182.40742 * 19 18 17 35 35 H 1.08999 * 109.54263 * 62.29675 * 19 18 17 36 36 H 1.09002 * 109.46396 * 179.19729 * 20 19 18 37 37 H 1.08994 * 109.46485 * 299.17654 * 20 19 18 38 38 H 1.00902 * 110.99979 * 62.35429 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 2.1378 -0.8588 3.5567 8 14 0.6247 1.2793 2.6540 9 1 -0.8029 0.8730 2.6996 10 1 0.9758 1.9954 3.9066 11 1 0.8471 2.1766 1.4919 12 7 2.0184 -0.6908 -1.1961 13 6 2.1472 -0.0185 -2.3570 14 8 1.8592 1.1584 -2.4116 15 6 2.6490 -0.7292 -3.5876 16 6 1.4791 -1.4223 -4.2887 17 6 3.2846 0.2867 -4.5396 18 6 4.4673 0.9631 -3.8408 19 6 5.4720 -0.1067 -3.4043 20 6 4.7730 -1.1112 -2.4852 21 7 3.6501 -1.7312 -3.2000 22 1 -0.3633 0.5140 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.9031 -0.5275 4.4376 26 1 2.2491 -1.6319 -1.1524 27 1 1.8419 -1.9360 -5.1790 28 1 1.0264 -2.1458 -3.6108 29 1 0.7356 -0.6788 -4.5759 30 1 2.5457 1.0392 -4.8148 31 1 3.6355 -0.2246 -5.4359 32 1 4.1111 1.5069 -2.9659 33 1 4.9500 1.6568 -4.5292 34 1 6.2958 0.3647 -2.8685 35 1 5.8578 -0.6244 -4.2825 36 1 5.4821 -1.8823 -2.1840 37 1 4.3999 -0.5954 -1.6005 38 1 3.9742 -2.2483 -4.0036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127507852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:04 Heat of formation + Delta-G solvation = -44.997344 kcal Electronic energy + Delta-G solvation = -18597.770302 eV Core-core repulsion = 15860.597812 eV Total energy + Delta-G solvation = -2737.172489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32935 -37.32635 -34.95623 -32.88614 -32.25188 -31.40962 -29.62965 -27.03593 -25.15314 -23.67179 -23.06427 -21.13025 -20.13172 -19.08706 -17.03135 -16.07244 -15.63043 -15.43356 -14.92557 -14.28366 -14.19052 -13.74572 -13.58070 -13.31742 -12.91512 -12.49122 -12.17036 -12.16003 -11.93729 -11.88910 -11.66760 -11.51694 -11.16500 -11.00848 -10.77473 -10.55384 -10.35631 -10.14248 -9.66399 -9.17382 -8.99878 -8.70550 -8.30921 -8.01166 -6.16629 -4.18249 3.25439 3.30033 3.37564 3.42539 4.00391 4.21988 4.35239 4.77781 4.96662 5.03264 5.13632 5.18198 5.35242 5.42674 5.52355 5.69053 5.77263 5.81434 5.92349 6.00332 6.05516 6.15306 6.21716 6.30029 6.36399 6.42457 6.49026 6.61782 6.89454 6.97737 7.27680 7.39006 7.42241 7.59543 8.24718 8.66032 8.82553 9.07286 9.45246 10.95628 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031663 B = 0.007602 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.098836 B = 3682.442432 C = 3896.262167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.234 3.766 3 H 0.045 0.955 4 C -0.530 4.530 5 H 0.081 0.919 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.263 1.263 12 N -0.688 5.688 13 C 0.520 3.480 14 O -0.561 6.561 15 C 0.092 3.908 16 C -0.135 4.135 17 C -0.128 4.128 18 C -0.126 4.126 19 C -0.155 4.155 20 C 0.045 3.955 21 N -0.670 5.670 22 H 0.046 0.954 23 H 0.034 0.966 24 H 0.053 0.947 25 H 0.266 0.734 26 H 0.404 0.596 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 -1.345 -15.352 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.130 3.870 3 H 0.063 0.937 4 C -0.568 4.568 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.336 5.336 13 C 0.304 3.696 14 O -0.440 6.440 15 C -0.002 4.002 16 C -0.193 4.193 17 C -0.168 4.168 18 C -0.163 4.163 19 C -0.194 4.194 20 C -0.085 4.085 21 N -0.301 5.301 22 H 0.064 0.936 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.239 0.761 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.489 -0.709 -14.550 14.779 hybrid contribution 0.013 0.755 -0.453 0.881 sum 2.501 0.046 -15.003 15.210 Atomic orbital electron populations 1.22444 0.99462 1.00799 0.99145 1.19095 0.90079 0.94577 0.83212 0.93705 1.21057 1.33013 1.14300 0.88469 0.90118 1.24834 0.95535 0.96654 0.95576 1.69876 1.45059 1.40139 0.97982 0.86887 0.80581 0.83728 0.77312 1.20383 1.22248 1.18763 1.46203 1.63808 1.14447 1.09152 1.20075 0.78200 0.86822 0.84530 1.90636 1.52367 1.15980 1.85052 1.21201 0.93478 0.91810 0.93731 1.21747 0.96642 1.00706 1.00172 1.21994 0.98426 0.99004 0.97331 1.21620 0.95549 0.97759 1.01398 1.22237 0.98864 0.98324 0.99998 1.22218 0.92077 0.96718 0.97469 1.60633 1.14129 1.25359 1.29984 0.93591 0.94668 0.92821 0.92387 0.76115 0.91942 0.91146 0.91637 0.90521 0.91951 0.90534 0.92270 0.91509 0.92426 0.90290 0.89364 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 8.96 37.16 0.33 -3.35 16 2 C 0.23 5.70 2.15 -69.08 -0.15 5.55 16 3 H 0.05 1.21 6.64 -51.93 -0.34 0.86 16 4 C -0.53 -14.52 9.31 -34.44 -0.32 -14.84 16 5 H 0.08 2.33 7.98 -52.49 -0.42 1.92 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 8 Si 0.88 22.11 24.37 -169.99 -4.14 17.97 16 9 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 12 N -0.69 -14.14 4.09 -54.93 -0.22 -14.37 16 13 C 0.52 9.97 4.69 -10.99 -0.05 9.92 16 14 O -0.56 -12.65 14.71 5.55 0.08 -12.57 16 15 C 0.09 1.31 0.87 -132.76 -0.12 1.20 16 16 C -0.13 -1.64 8.73 37.15 0.32 -1.31 16 17 C -0.13 -1.69 4.52 -26.65 -0.12 -1.81 16 18 C -0.13 -1.74 5.72 -26.61 -0.15 -1.89 16 19 C -0.15 -1.89 6.08 -26.65 -0.16 -2.05 16 20 C 0.04 0.61 6.23 -3.83 -0.02 0.58 16 21 N -0.67 -8.52 5.57 -101.17 -0.56 -9.08 16 22 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.40 7.82 7.90 -40.82 -0.32 7.50 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.10 7.84 -51.93 -0.41 0.69 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.33 6.58 -51.93 -0.34 0.98 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.52 6.39 -51.93 -0.33 1.19 16 38 H 0.34 3.50 8.79 -39.29 -0.35 3.15 16 LS Contribution 291.03 15.07 4.39 4.39 Total: -1.00 -30.50 291.03 -6.32 -36.81 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.09 Total: 8.67 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.53 Total: -5.91 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.01 Total: -49.36 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.50 -6.32 -36.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127507852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.186 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds