Wall clock time and date at job start Mon Mar 30 2020 03:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.46474 * 84.97885 * 15 13 12 17 17 C 1.53037 * 109.45801 * 204.95076 * 15 13 12 18 18 C 1.53121 * 109.28318 * 60.83358 * 17 15 13 19 19 C 1.53124 * 109.15733 * 57.65358 * 18 17 15 20 20 C 1.53032 * 109.27706 * 302.34693 * 19 18 17 21 21 N 1.46841 * 109.52701 * 59.18054 * 20 19 18 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 27 27 H 1.09005 * 109.46659 * 59.99730 * 16 15 13 28 28 H 1.08997 * 109.46987 * 180.02562 * 16 15 13 29 29 H 1.09002 * 109.47042 * 300.00054 * 16 15 13 30 30 H 1.09004 * 109.49978 * 180.77991 * 17 15 13 31 31 H 1.09006 * 109.50039 * 300.89042 * 17 15 13 32 32 H 1.09000 * 109.52085 * 297.75123 * 18 17 15 33 33 H 1.08998 * 109.57390 * 177.58742 * 18 17 15 34 34 H 1.08994 * 109.49869 * 182.40272 * 19 18 17 35 35 H 1.09002 * 109.53507 * 62.30742 * 19 18 17 36 36 H 1.09002 * 109.46029 * 299.16100 * 20 19 18 37 37 H 1.09001 * 109.45263 * 179.19221 * 20 19 18 38 38 H 1.00905 * 111.00123 * 174.15881 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 4.1798 -0.7281 3.5868 17 6 2.1406 -0.0062 4.8370 18 6 0.6095 -0.0264 4.8440 19 6 0.1259 -1.4784 4.7946 20 6 0.6936 -2.1578 3.5464 21 7 2.1607 -2.1129 3.5874 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 2.2490 -1.6316 1.1527 27 1 4.5430 0.2996 3.5865 28 1 4.5436 -1.2422 4.4764 29 1 4.5428 -1.2420 2.6967 30 1 2.5153 -0.5112 5.7273 31 1 2.4909 1.0260 4.8289 32 1 0.2342 0.5123 3.9739 33 1 0.2422 0.4492 5.7533 34 1 -0.9632 -1.4980 4.7563 35 1 0.4683 -2.0070 5.6843 36 1 0.3390 -1.6374 2.6567 37 1 0.3627 -3.1960 3.5160 38 1 2.5601 -2.6375 2.8235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127508098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:06 Heat of formation + Delta-G solvation = -51.782323 kcal Electronic energy + Delta-G solvation = -18569.482789 eV Core-core repulsion = 15832.016080 eV Total energy + Delta-G solvation = -2737.466708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.27422 -37.00336 -34.89885 -33.01564 -32.28445 -31.43247 -28.77486 -26.93116 -25.30144 -23.49774 -23.04452 -21.14572 -19.92230 -18.84057 -17.26587 -16.10564 -15.68952 -15.23454 -14.68060 -14.31176 -13.98645 -13.55101 -13.40174 -13.25538 -12.96480 -12.45622 -11.98662 -11.87829 -11.81641 -11.65141 -11.42250 -11.12966 -10.98461 -10.76254 -10.51567 -10.35847 -10.30287 -10.27066 -10.13659 -9.48748 -9.09131 -8.58680 -8.12317 -7.91171 -6.15102 -4.24993 3.23001 3.28417 3.29257 3.36497 3.93650 4.27790 4.41981 4.86267 5.00510 5.12687 5.16976 5.26867 5.47612 5.48298 5.73355 5.77350 5.86723 5.90884 6.01807 6.07851 6.14006 6.23381 6.26615 6.35610 6.60781 6.77464 6.91741 7.01955 7.11504 7.38444 7.42741 7.52831 7.65911 7.87883 8.11760 8.62222 8.74907 9.08772 9.42770 10.90653 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035228 B = 0.006774 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.642722 B = 4132.560541 C = 4248.001413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.710 5.710 13 C 0.481 3.519 14 O -0.551 6.551 15 C 0.094 3.906 16 C -0.135 4.135 17 C -0.087 4.087 18 C -0.127 4.127 19 C -0.114 4.114 20 C 0.045 3.955 21 N -0.672 5.672 22 H 0.013 0.987 23 H 0.090 0.910 24 H 0.025 0.975 25 H 0.265 0.735 26 H 0.383 0.617 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -5.965 12.037 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.359 5.359 13 C 0.264 3.736 14 O -0.428 6.428 15 C 0.000 4.000 16 C -0.193 4.193 17 C -0.125 4.125 18 C -0.165 4.165 19 C -0.152 4.152 20 C -0.084 4.084 21 N -0.305 5.305 22 H 0.032 0.968 23 H 0.108 0.892 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.215 0.785 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.298 -5.033 12.565 13.598 hybrid contribution 0.199 -0.703 -1.950 2.082 sum 1.497 -5.736 10.615 12.158 Atomic orbital electron populations 1.22060 0.98526 0.98929 1.00808 1.18709 0.90935 0.93919 0.80054 0.93517 1.21173 1.32571 1.13238 0.90392 0.92238 1.24891 0.94769 0.94937 0.99058 1.69894 1.35735 1.22410 1.24012 0.86505 0.79186 0.79586 0.81812 1.21082 1.20156 1.20159 1.46608 1.65139 1.13290 1.10818 1.21351 0.78690 0.88040 0.85486 1.90626 1.50825 1.16201 1.85192 1.21322 0.96334 0.88393 0.93955 1.21762 0.92071 1.02749 1.02748 1.21363 0.95739 1.00104 0.95329 1.21642 0.95852 0.96510 1.02493 1.21557 0.99506 0.96041 0.98065 1.22074 0.87377 1.00768 0.98208 1.60538 1.07812 1.11361 1.50775 0.96830 0.89156 0.95626 0.92492 0.78498 0.91498 0.91055 0.92131 0.91162 0.90787 0.90997 0.92103 0.91944 0.91545 0.93501 0.90724 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.26 37.16 0.34 -3.27 16 2 C 0.27 6.78 2.56 -69.09 -0.18 6.60 16 3 H 0.05 1.39 7.58 -51.92 -0.39 1.00 16 4 C -0.54 -14.19 8.73 -34.44 -0.30 -14.49 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.95 11.32 55.43 0.63 -24.33 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.71 -14.73 4.10 -54.93 -0.23 -14.96 16 13 C 0.48 9.60 4.69 -10.98 -0.05 9.55 16 14 O -0.55 -13.18 14.70 5.56 0.08 -13.10 16 15 C 0.09 1.44 0.90 -132.76 -0.12 1.32 16 16 C -0.14 -1.80 8.69 37.16 0.32 -1.47 16 17 C -0.09 -1.26 4.53 -26.65 -0.12 -1.38 16 18 C -0.13 -1.85 5.72 -26.60 -0.15 -2.00 16 19 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 20 C 0.04 0.62 6.22 -3.84 -0.02 0.59 16 21 N -0.67 -8.98 6.12 -101.18 -0.62 -9.60 16 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 23 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.38 6.99 7.07 -40.82 -0.29 6.70 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.13 7.84 -51.93 -0.41 0.73 16 32 H 0.07 1.29 6.58 -51.93 -0.34 0.95 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.34 4.26 7.47 -39.29 -0.29 3.97 16 LS Contribution 296.27 15.07 4.46 4.46 Total: -1.00 -29.72 296.27 -7.37 -37.08 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.14 Total: 9.30 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.53 Total: -4.48 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.22 Total: -48.89 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.72 -7.37 -37.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127508098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.700 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds