Wall clock time and date at job start Mon Mar 30 2020 03:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.46474 * 84.97885 * 15 13 12 17 17 C 1.53037 * 109.45801 * 204.95076 * 15 13 12 18 18 C 1.53121 * 109.28318 * 60.83358 * 17 15 13 19 19 C 1.53124 * 109.15733 * 57.65358 * 18 17 15 20 20 C 1.53032 * 109.27706 * 302.34693 * 19 18 17 21 21 N 1.46841 * 109.52701 * 59.18054 * 20 19 18 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 27 27 H 1.09005 * 109.46659 * 59.99730 * 16 15 13 28 28 H 1.08997 * 109.46987 * 180.02562 * 16 15 13 29 29 H 1.09002 * 109.47042 * 300.00054 * 16 15 13 30 30 H 1.09004 * 109.49978 * 180.77991 * 17 15 13 31 31 H 1.09006 * 109.50039 * 300.89042 * 17 15 13 32 32 H 1.09000 * 109.52085 * 297.75123 * 18 17 15 33 33 H 1.08998 * 109.57390 * 177.58742 * 18 17 15 34 34 H 1.08994 * 109.49869 * 182.40272 * 19 18 17 35 35 H 1.09002 * 109.53507 * 62.30742 * 19 18 17 36 36 H 1.09002 * 109.46029 * 299.16100 * 20 19 18 37 37 H 1.09001 * 109.45263 * 179.19221 * 20 19 18 38 38 H 1.00905 * 111.00123 * 174.15881 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 4.1798 -0.7281 3.5868 17 6 2.1406 -0.0062 4.8370 18 6 0.6095 -0.0264 4.8440 19 6 0.1259 -1.4784 4.7946 20 6 0.6936 -2.1578 3.5464 21 7 2.1607 -2.1129 3.5874 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 2.2490 -1.6316 1.1527 27 1 4.5430 0.2996 3.5865 28 1 4.5436 -1.2422 4.4764 29 1 4.5428 -1.2420 2.6967 30 1 2.5153 -0.5112 5.7273 31 1 2.4909 1.0260 4.8289 32 1 0.2342 0.5123 3.9739 33 1 0.2422 0.4492 5.7533 34 1 -0.9632 -1.4980 4.7563 35 1 0.4683 -2.0070 5.6843 36 1 0.3390 -1.6374 2.6567 37 1 0.3627 -3.1960 3.5160 38 1 2.5601 -2.6375 2.8235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127508098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:06 Heat of formation + Delta-G solvation = -72.952493 kcal Electronic energy + Delta-G solvation = -18570.400796 eV Core-core repulsion = 15832.016080 eV Total energy + Delta-G solvation = -2738.384716 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70969 -38.48022 -36.79668 -34.58221 -33.77897 -32.68661 -30.70734 -28.00044 -27.40474 -24.85561 -24.39421 -22.63129 -21.52265 -20.44940 -18.74576 -17.81984 -17.28710 -16.85620 -16.21186 -15.87978 -15.32218 -15.05782 -14.78064 -14.52173 -14.46333 -14.07401 -13.73635 -13.22494 -13.02357 -12.97268 -12.91234 -12.81319 -12.72169 -12.64837 -12.32586 -12.19570 -11.63740 -11.43878 -11.26339 -11.15965 -10.98374 -10.63507 -9.79978 -9.43425 -8.21207 -6.39948 1.42280 1.44456 1.52421 1.77504 2.30152 2.51896 3.08719 3.15781 3.67705 3.83167 3.97021 4.05549 4.25362 4.38547 4.62027 4.66458 4.68432 4.75793 4.83738 4.86111 4.91446 4.99484 5.03240 5.07226 5.15950 5.18200 5.25095 5.36921 5.47578 5.56321 5.59514 5.78896 5.92442 6.04566 6.31287 6.67617 6.90447 7.27812 7.49390 8.84717 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035228 B = 0.006774 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.642722 B = 4132.560541 C = 4248.001413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.273 3.727 3 H -0.007 1.007 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.286 1.286 10 H -0.270 1.270 11 H -0.263 1.263 12 N -0.705 5.705 13 C 0.477 3.523 14 O -0.597 6.597 15 C 0.104 3.896 16 C -0.133 4.133 17 C -0.087 4.087 18 C -0.129 4.129 19 C -0.109 4.109 20 C 0.042 3.958 21 N -0.653 5.653 22 H 0.006 0.994 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.266 0.734 26 H 0.397 0.603 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.012 0.988 37 H 0.100 0.900 38 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -8.624 13.069 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.170 3.830 3 H 0.011 0.989 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.211 1.211 10 H -0.195 1.195 11 H -0.188 1.188 12 N -0.354 5.354 13 C 0.263 3.737 14 O -0.477 6.477 15 C 0.009 3.991 16 C -0.191 4.191 17 C -0.125 4.125 18 C -0.167 4.167 19 C -0.147 4.147 20 C -0.087 4.087 21 N -0.287 5.287 22 H 0.025 0.975 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.232 0.768 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.031 0.969 37 H 0.118 0.882 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.274 -7.737 13.622 15.830 hybrid contribution -0.129 0.175 -2.227 2.238 sum 2.144 -7.562 11.395 13.843 Atomic orbital electron populations 1.21846 0.98436 0.99154 0.99204 1.18280 0.90939 0.91689 0.82112 0.98891 1.21502 1.32781 1.13632 0.90799 0.90888 1.25832 0.94775 0.95544 1.02417 1.70052 1.36883 1.23949 1.24736 0.85374 0.78688 0.78721 0.77432 1.21142 1.19483 1.18751 1.46339 1.65229 1.13848 1.09979 1.22440 0.77268 0.87613 0.86425 1.90602 1.52570 1.18601 1.85942 1.21360 0.97640 0.88765 0.91352 1.21789 0.90162 1.02715 1.04392 1.21409 0.95614 0.99542 0.95914 1.21637 0.96087 0.97587 1.01346 1.21554 1.00041 0.94642 0.98423 1.22156 0.87409 1.01901 0.97266 1.60606 1.07657 1.09674 1.50723 0.97530 0.91545 0.94262 0.92497 0.76775 0.92450 0.87959 0.91912 0.88065 0.92370 0.95408 0.90290 0.91190 0.89263 0.96944 0.88217 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.63 9.26 71.98 0.67 -5.96 16 2 C 0.27 14.44 2.56 44.24 0.11 14.56 16 3 H -0.01 -0.43 7.58 -2.38 -0.02 -0.45 16 4 C -0.55 -29.26 8.73 25.60 0.22 -29.04 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -53.21 11.32 21.45 0.24 -52.97 16 8 Si 0.97 41.98 29.54 68.60 2.03 44.00 16 9 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 12 N -0.70 -29.63 4.10 -446.09 -1.83 -31.46 16 13 C 0.48 19.39 4.69 87.66 0.41 19.80 16 14 O -0.60 -30.02 14.70 -3.04 -0.04 -30.07 16 15 C 0.10 3.00 0.90 2.81 0.00 3.00 16 16 C -0.13 -3.22 8.69 71.98 0.63 -2.60 16 17 C -0.09 -2.36 4.53 30.65 0.14 -2.22 16 18 C -0.13 -3.63 5.72 30.68 0.18 -3.45 16 19 C -0.11 -2.54 6.09 30.65 0.19 -2.35 16 20 C 0.04 1.06 6.22 86.33 0.54 1.60 16 21 N -0.65 -15.67 6.12 -474.01 -2.90 -18.58 16 22 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 23 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.40 14.21 7.07 -92.71 -0.66 13.55 16 27 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 1.76 7.84 -2.38 -0.02 1.74 16 32 H 0.03 1.02 6.58 -2.39 -0.02 1.00 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.01 0.40 6.40 -2.39 -0.02 0.39 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.35 7.67 7.47 -89.69 -0.67 7.00 16 Total: -1.00 -66.81 296.27 0.75 -66.06 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.27 Total: 28.44 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 3.53 Total: -5.43 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -4.49 Total: -103.01 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.04 Total: -30.07 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -66.81 0.75 -66.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127508098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.892 kcal (2) G-P(sol) polarization free energy of solvation -66.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds