Wall clock time and date at job start Mon Mar 30 2020 04:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46995 * 2 1 4 4 C 1.46499 * 120.00136 * 89.54911 * 3 2 1 5 5 C 1.50699 * 109.46815 * 90.67368 * 4 3 2 6 6 H 1.08003 * 120.00573 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00002 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99893 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00427 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47389 * 59.99574 * 9 7 5 11 11 H 1.48496 * 109.47383 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46735 * 299.99951 * 9 7 5 13 13 C 1.34779 * 119.99563 * 269.54953 * 3 2 1 14 14 O 1.21278 * 120.00260 * 4.96871 * 13 3 2 15 15 C 1.50701 * 119.99318 * 184.96711 * 13 3 2 16 16 H 1.08991 * 109.47316 * 331.11108 * 15 13 3 17 17 C 1.53002 * 109.47137 * 91.11680 * 15 13 3 18 18 C 1.53008 * 109.46928 * 211.11058 * 15 13 3 19 19 C 1.53931 * 113.73195 * 156.72731 * 18 15 13 20 20 N 1.47966 * 86.17923 * 221.92063 * 19 18 15 21 21 C 1.47959 * 90.76390 * 24.69284 * 20 19 18 22 22 H 1.08997 * 109.47512 * 55.60978 * 1 2 3 23 23 H 1.08996 * 109.47149 * 175.61663 * 1 2 3 24 24 H 1.09005 * 109.46871 * 295.61379 * 1 2 3 25 25 H 1.08996 * 109.46779 * 240.00302 * 2 1 3 26 26 H 1.08995 * 109.47192 * 120.00015 * 2 1 3 27 27 H 1.08990 * 109.46951 * 210.67548 * 4 3 2 28 28 H 1.08997 * 109.47036 * 330.67861 * 4 3 2 29 29 H 0.96996 * 119.99852 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.47047 * 185.79851 * 17 15 13 31 31 H 1.09002 * 109.46955 * 305.79210 * 17 15 13 32 32 H 1.08992 * 109.47334 * 65.79363 * 17 15 13 33 33 H 1.08998 * 112.93677 * 288.43722 * 18 15 13 34 34 H 1.08994 * 113.76490 * 336.24054 * 19 18 15 35 35 H 1.09003 * 113.75686 * 107.61182 * 19 18 15 36 36 H 1.00900 * 110.99863 * 271.80040 * 20 19 18 37 37 H 1.08992 * 113.75852 * 220.99585 * 21 20 19 38 38 H 1.08997 * 113.75773 * 89.61923 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2531 2.0752 1.2687 5 6 3.6779 1.8532 1.7064 6 1 4.3423 1.2554 1.1001 7 6 4.1334 2.4133 2.8811 8 7 3.3245 3.1418 3.6192 9 14 5.8997 2.1388 3.4234 10 1 6.8234 2.6718 2.3900 11 1 6.1376 2.8421 4.7095 12 1 6.1424 0.6847 3.6016 13 6 2.2516 2.0135 -1.1672 14 8 1.9726 1.4725 -2.2162 15 6 2.8590 3.3926 -1.1687 16 1 2.5810 3.9131 -0.2524 17 6 4.3827 3.2787 -1.2485 18 6 2.3423 4.1762 -2.3771 19 6 2.4146 5.7038 -2.2020 20 7 1.0748 5.7397 -2.8289 21 6 0.8128 4.3495 -2.3952 22 1 -0.3634 0.5804 -0.8480 23 1 -0.3633 -1.0246 -0.0785 24 1 -0.3633 0.4443 0.9267 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.0754 3.1425 1.1372 28 1 1.5749 1.6847 2.0273 29 1 3.6449 3.5355 4.4458 30 1 4.8269 4.2688 -1.1460 31 1 4.7414 2.6347 -0.4455 32 1 4.6653 2.8515 -2.2105 33 1 2.7548 3.8211 -3.3215 34 1 2.4211 6.0267 -1.1610 35 1 3.1923 6.1781 -2.8006 36 1 1.1471 5.7974 -3.8336 37 1 0.3109 3.7419 -3.1480 38 1 0.3510 4.2763 -1.4106 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129142740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:44 Heat of formation + Delta-G solvation = -12.855591 kcal Electronic energy + Delta-G solvation = -18341.573460 eV Core-core repulsion = 15605.794742 eV Total energy + Delta-G solvation = -2735.778718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.01752 -38.39018 -35.15128 -33.17716 -32.49959 -30.14439 -27.03892 -26.40090 -25.72116 -23.82761 -23.03619 -21.60568 -19.86516 -18.03947 -16.63035 -16.40868 -16.13651 -15.59869 -14.57611 -14.25231 -13.94138 -13.67377 -13.23937 -12.93298 -12.58420 -12.32663 -12.22148 -12.00027 -11.82409 -11.65750 -11.53719 -11.46009 -11.00310 -10.90838 -10.70753 -10.52267 -10.37931 -10.15834 -10.05091 -9.73303 -8.86750 -8.53653 -8.30614 -7.69999 -6.19811 -4.26887 3.21811 3.27615 3.29123 3.45823 3.94292 4.23072 4.31124 4.74060 5.02087 5.12794 5.43290 5.55015 5.63557 5.65370 5.74843 5.83858 5.88121 5.90527 5.95875 6.03433 6.13189 6.15594 6.26974 6.35499 6.42475 6.47665 6.57348 6.66149 6.81400 6.88498 7.20544 7.44292 7.56066 7.74971 8.04303 8.37490 8.78047 9.06488 9.40462 10.86713 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019666 B = 0.008934 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.404273 B = 3133.239910 C = 3913.284625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.596 5.596 4 C 0.237 3.763 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.523 3.477 14 O -0.578 6.578 15 C -0.097 4.097 16 H 0.103 0.897 17 C -0.136 4.136 18 C -0.133 4.133 19 C 0.021 3.979 20 N -0.663 5.663 21 C 0.025 3.975 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.266 0.734 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.331 0.669 37 H 0.071 0.929 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 1.099 -7.552 7.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.326 5.326 4 C 0.117 3.883 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.312 3.688 14 O -0.460 6.460 15 C -0.119 4.119 16 H 0.121 0.879 17 C -0.194 4.194 18 C -0.153 4.153 19 C -0.108 4.108 20 N -0.289 5.289 21 C -0.105 4.105 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.349 1.448 -7.407 7.904 hybrid contribution 1.642 -0.810 0.046 1.832 sum -0.707 0.638 -7.361 7.422 Atomic orbital electron populations 1.22100 0.96950 1.01116 1.01897 1.21215 0.93428 0.84015 1.02162 1.48283 1.63020 1.13345 1.07913 1.19445 0.96810 0.92702 0.79320 1.21424 0.96445 1.32740 1.06734 0.92085 1.24927 0.97787 0.94809 0.96184 1.69911 1.35549 1.33050 1.14314 0.86623 0.84726 0.78495 0.78050 1.20011 1.21152 1.20195 1.20444 0.77481 0.87706 0.83211 1.90555 1.54728 1.68760 1.31935 1.21275 0.97401 0.93763 0.99461 0.87895 1.21678 0.92854 1.02550 1.02313 1.24080 0.96636 0.95364 0.99247 1.23743 0.91238 0.94322 1.01544 1.65089 1.23050 1.26798 1.14002 1.23610 0.95676 0.89167 1.02020 0.92786 0.92596 0.92663 0.91405 0.90635 0.94364 0.94714 0.92455 0.92449 0.89907 0.93600 0.89054 0.88224 0.91248 0.85502 0.91062 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 10.24 37.16 0.38 -2.24 16 2 C 0.12 2.14 6.09 -4.04 -0.02 2.12 16 3 N -0.60 -12.43 2.46 -175.07 -0.43 -12.86 16 4 C 0.24 5.50 4.91 -5.19 -0.03 5.47 16 5 C -0.53 -13.37 8.08 -34.44 -0.28 -13.65 16 6 H 0.06 1.55 7.19 -52.48 -0.38 1.17 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -23.98 13.29 55.43 0.74 -23.25 16 9 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 C 0.52 10.73 6.22 -10.98 -0.07 10.67 16 14 O -0.58 -12.79 15.88 5.56 0.09 -12.70 16 15 C -0.10 -1.77 1.98 -91.77 -0.18 -1.95 16 16 H 0.10 2.01 5.57 -51.93 -0.29 1.72 16 17 C -0.14 -2.40 9.18 37.16 0.34 -2.06 16 18 C -0.13 -2.07 2.78 -89.68 -0.25 -2.32 16 19 C 0.02 0.29 8.46 -2.77 -0.02 0.27 16 20 N -0.66 -9.22 8.56 -117.03 -1.00 -10.22 16 21 C 0.02 0.38 7.82 -2.76 -0.02 0.36 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 1.27 7.48 -51.93 -0.39 0.88 16 26 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 27 H 0.04 0.92 5.91 -51.93 -0.31 0.61 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.44 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.66 6.06 -51.93 -0.31 1.35 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.10 1.43 7.96 -51.93 -0.41 1.02 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.33 3.94 8.89 -39.29 -0.35 3.59 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.55 8.10 -51.93 -0.42 1.13 16 LS Contribution 309.00 15.07 4.66 4.66 Total: -1.00 -27.55 309.00 -7.44 -34.99 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.22 Total: 6.05 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -0.25 Total: -1.72 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.69 Total: -46.33 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.55 -7.44 -34.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129142740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.134 kcal (2) G-P(sol) polarization free energy of solvation -27.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds