Wall clock time and date at job start Mon Mar 30 2020 04:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46995 * 2 1 4 4 C 1.46499 * 120.00136 * 89.54911 * 3 2 1 5 5 C 1.50699 * 109.46815 * 90.67368 * 4 3 2 6 6 H 1.08003 * 120.00573 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00002 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99893 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00427 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47389 * 59.99574 * 9 7 5 11 11 H 1.48496 * 109.47383 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46735 * 299.99951 * 9 7 5 13 13 C 1.34779 * 119.99563 * 269.54953 * 3 2 1 14 14 O 1.21278 * 120.00260 * 4.96871 * 13 3 2 15 15 C 1.50701 * 119.99318 * 184.96711 * 13 3 2 16 16 H 1.08991 * 109.47316 * 331.11108 * 15 13 3 17 17 C 1.53002 * 109.47137 * 91.11680 * 15 13 3 18 18 C 1.53008 * 109.46928 * 211.11058 * 15 13 3 19 19 C 1.53931 * 113.73195 * 156.72731 * 18 15 13 20 20 N 1.47966 * 86.17923 * 221.92063 * 19 18 15 21 21 C 1.47959 * 90.76390 * 24.69284 * 20 19 18 22 22 H 1.08997 * 109.47512 * 55.60978 * 1 2 3 23 23 H 1.08996 * 109.47149 * 175.61663 * 1 2 3 24 24 H 1.09005 * 109.46871 * 295.61379 * 1 2 3 25 25 H 1.08996 * 109.46779 * 240.00302 * 2 1 3 26 26 H 1.08995 * 109.47192 * 120.00015 * 2 1 3 27 27 H 1.08990 * 109.46951 * 210.67548 * 4 3 2 28 28 H 1.08997 * 109.47036 * 330.67861 * 4 3 2 29 29 H 0.96996 * 119.99852 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.47047 * 185.79851 * 17 15 13 31 31 H 1.09002 * 109.46955 * 305.79210 * 17 15 13 32 32 H 1.08992 * 109.47334 * 65.79363 * 17 15 13 33 33 H 1.08998 * 112.93677 * 288.43722 * 18 15 13 34 34 H 1.08994 * 113.76490 * 336.24054 * 19 18 15 35 35 H 1.09003 * 113.75686 * 107.61182 * 19 18 15 36 36 H 1.00900 * 110.99863 * 271.80040 * 20 19 18 37 37 H 1.08992 * 113.75852 * 220.99585 * 21 20 19 38 38 H 1.08997 * 113.75773 * 89.61923 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2531 2.0752 1.2687 5 6 3.6779 1.8532 1.7064 6 1 4.3423 1.2554 1.1001 7 6 4.1334 2.4133 2.8811 8 7 3.3245 3.1418 3.6192 9 14 5.8997 2.1388 3.4234 10 1 6.8234 2.6718 2.3900 11 1 6.1376 2.8421 4.7095 12 1 6.1424 0.6847 3.6016 13 6 2.2516 2.0135 -1.1672 14 8 1.9726 1.4725 -2.2162 15 6 2.8590 3.3926 -1.1687 16 1 2.5810 3.9131 -0.2524 17 6 4.3827 3.2787 -1.2485 18 6 2.3423 4.1762 -2.3771 19 6 2.4146 5.7038 -2.2020 20 7 1.0748 5.7397 -2.8289 21 6 0.8128 4.3495 -2.3952 22 1 -0.3634 0.5804 -0.8480 23 1 -0.3633 -1.0246 -0.0785 24 1 -0.3633 0.4443 0.9267 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.0754 3.1425 1.1372 28 1 1.5749 1.6847 2.0273 29 1 3.6449 3.5355 4.4458 30 1 4.8269 4.2688 -1.1460 31 1 4.7414 2.6347 -0.4455 32 1 4.6653 2.8515 -2.2105 33 1 2.7548 3.8211 -3.3215 34 1 2.4211 6.0267 -1.1610 35 1 3.1923 6.1781 -2.8006 36 1 1.1471 5.7974 -3.8336 37 1 0.3109 3.7419 -3.1480 38 1 0.3510 4.2763 -1.4106 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129142740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:44 Heat of formation + Delta-G solvation = -30.801157 kcal Electronic energy + Delta-G solvation = -18342.351639 eV Core-core repulsion = 15605.794742 eV Total energy + Delta-G solvation = -2736.556897 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.44961 -39.81016 -36.87039 -34.84660 -34.19224 -31.68616 -28.91153 -27.68514 -26.89006 -25.27828 -24.94024 -23.02375 -21.14332 -19.67750 -18.47119 -18.03891 -17.41271 -17.19984 -16.39159 -15.85825 -15.31492 -15.11542 -14.61797 -14.41692 -14.20094 -13.80862 -13.61110 -13.45068 -13.27010 -13.20882 -13.06140 -13.03190 -12.69249 -12.62972 -12.19383 -12.02237 -11.82358 -11.72566 -11.59363 -11.50134 -10.63603 -10.37181 -9.49635 -9.41123 -8.17110 -6.30453 1.43932 1.45146 1.52125 1.81420 2.32432 2.47222 3.09079 3.13294 3.42964 3.74865 3.95629 4.20381 4.28343 4.36372 4.40672 4.43823 4.53810 4.61095 4.71663 4.77070 4.82241 4.85578 4.95517 4.99123 5.00916 5.01974 5.11483 5.21027 5.28633 5.35563 5.40941 5.70120 5.88804 6.08531 6.42427 6.60947 6.84932 7.34477 7.45631 8.88346 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019666 B = 0.008934 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.404273 B = 3133.239910 C = 3913.284625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.253 3.747 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.024 3.976 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.275 1.275 13 C 0.519 3.481 14 O -0.594 6.594 15 C -0.094 4.094 16 H 0.086 0.914 17 C -0.131 4.131 18 C -0.130 4.130 19 C 0.030 3.970 20 N -0.663 5.663 21 C 0.024 3.976 22 H 0.043 0.957 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.018 0.982 29 H 0.267 0.733 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.346 0.654 37 H 0.071 0.929 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 1.377 -8.371 8.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.331 5.331 4 C 0.133 3.867 5 C -0.574 4.574 6 H 0.073 0.927 7 C -0.176 4.176 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.309 3.691 14 O -0.477 6.477 15 C -0.116 4.116 16 H 0.104 0.896 17 C -0.188 4.188 18 C -0.150 4.150 19 C -0.099 4.099 20 N -0.291 5.291 21 C -0.106 4.106 22 H 0.062 0.938 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.046 0.954 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.161 0.839 37 H 0.090 0.910 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.641 1.718 -8.243 8.579 hybrid contribution 1.384 -0.930 0.272 1.690 sum -0.256 0.788 -7.971 8.014 Atomic orbital electron populations 1.21999 0.94929 1.02838 1.01187 1.21385 0.95132 0.82862 1.02051 1.48325 1.63280 1.14184 1.07318 1.19086 0.95672 0.92168 0.79819 1.21560 0.97014 1.32238 1.06625 0.92675 1.25592 1.01178 0.94604 0.96273 1.70007 1.37161 1.34015 1.14726 0.85721 0.80659 0.78318 0.77707 1.19252 1.20974 1.20012 1.20865 0.77049 0.88474 0.82718 1.90536 1.55485 1.69436 1.32220 1.21268 0.97779 0.92437 1.00083 0.89582 1.21622 0.92298 1.03242 1.01677 1.24107 0.96516 0.96324 0.98048 1.23718 0.91847 0.92709 1.01674 1.65037 1.23290 1.25506 1.15229 1.23508 0.95549 0.90241 1.01278 0.93831 0.89587 0.92997 0.91522 0.90641 0.95412 0.96422 0.92421 0.90342 0.92646 0.92653 0.88596 0.89102 0.88512 0.83893 0.91038 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 10.24 71.98 0.74 -4.03 16 2 C 0.11 4.01 6.09 86.38 0.53 4.54 16 3 N -0.60 -25.30 2.46 -826.17 -2.03 -27.33 16 4 C 0.25 11.96 4.91 85.63 0.42 12.38 16 5 C -0.54 -26.93 8.08 25.60 0.21 -26.72 16 6 H 0.06 2.80 7.19 -2.91 -0.02 2.78 16 7 C 0.02 1.22 5.46 84.65 0.46 1.69 16 8 N -0.92 -49.80 13.29 21.45 0.28 -49.51 16 9 Si 0.95 40.76 29.54 68.60 2.03 42.79 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 C 0.52 21.30 6.22 87.66 0.54 21.85 16 14 O -0.59 -26.00 15.88 -3.02 -0.05 -26.05 16 15 C -0.09 -3.37 1.98 -11.54 -0.02 -3.39 16 16 H 0.09 3.40 5.57 -2.39 -0.01 3.38 16 17 C -0.13 -4.46 9.18 71.98 0.66 -3.80 16 18 C -0.13 -3.85 2.78 -10.14 -0.03 -3.88 16 19 C 0.03 0.76 8.46 86.40 0.73 1.49 16 20 N -0.66 -17.20 8.56 -524.16 -4.48 -21.68 16 21 C 0.02 0.73 7.82 86.41 0.68 1.40 16 22 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.07 2.47 7.48 -2.39 -0.02 2.45 16 26 H 0.08 2.75 8.08 -2.39 -0.02 2.74 16 27 H 0.03 1.38 5.91 -2.39 -0.01 1.37 16 28 H 0.02 0.89 8.07 -2.39 -0.02 0.87 16 29 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.05 2.20 6.06 -2.39 -0.01 2.18 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.09 2.48 7.96 -2.39 -0.02 2.46 16 35 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.35 7.36 8.89 -89.69 -0.80 6.56 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 Total: -1.00 -57.46 309.00 0.90 -56.56 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.24 Total: 23.70 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 4.91 Total: 1.52 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -6.23 Total: -98.53 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -57.46 0.90 -56.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129142740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.761 kcal (2) G-P(sol) polarization free energy of solvation -57.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds