Wall clock time and date at job start Mon Mar 30 2020 03:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37875 * 120.00133 * 294.36950 * 4 2 1 7 7 N 1.31516 * 120.00510 * 156.90156 * 6 4 2 8 8 Si 1.86810 * 119.99756 * 337.17312 * 6 4 2 9 9 H 1.48501 * 109.47061 * 179.72434 * 8 6 4 10 10 H 1.48495 * 109.46894 * 299.72787 * 8 6 4 11 11 H 1.48496 * 109.46696 * 59.72479 * 8 6 4 12 12 N 1.46503 * 109.46749 * 240.00646 * 2 1 3 13 13 C 1.46505 * 120.00016 * 299.99254 * 12 2 1 14 14 C 1.34773 * 120.00310 * 119.99959 * 12 2 1 15 15 O 1.21276 * 119.99959 * 359.97438 * 14 12 2 16 16 C 1.50704 * 120.00250 * 179.97438 * 14 12 2 17 17 H 1.08998 * 109.47200 * 300.00174 * 16 14 12 18 18 C 1.52999 * 109.46748 * 60.00427 * 16 14 12 19 19 C 1.52995 * 109.46974 * 179.97438 * 16 14 12 20 20 C 1.53938 * 113.73324 * 158.76813 * 19 16 14 21 21 N 1.48187 * 86.10269 * 221.95932 * 20 19 16 22 22 C 1.47961 * 90.80004 * 24.59995 * 21 20 19 23 23 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 24 24 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 25 25 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 26 26 H 0.96989 * 119.99527 * 355.20009 * 7 6 4 27 27 H 1.09007 * 109.46817 * 90.00493 * 13 12 2 28 28 H 1.08992 * 109.47593 * 210.00355 * 13 12 2 29 29 H 1.08998 * 109.47142 * 330.00868 * 13 12 2 30 30 H 1.09004 * 109.46878 * 299.99581 * 18 16 14 31 31 H 1.08998 * 109.47478 * 59.99917 * 18 16 14 32 32 H 1.09006 * 109.47185 * 180.02562 * 18 16 14 33 33 H 1.09003 * 112.94220 * 290.33563 * 19 16 14 34 34 H 1.09005 * 113.75935 * 336.24091 * 20 19 16 35 35 H 1.09001 * 113.75829 * 107.60171 * 20 19 16 36 36 H 1.00900 * 111.07091 * 137.51923 * 21 20 19 37 37 H 1.09002 * 113.75755 * 221.08450 * 22 21 20 38 38 H 1.09000 * 113.85890 * 89.72989 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7976 -0.1758 2.4793 7 7 1.8082 -0.9532 3.5401 8 14 1.4571 1.6517 2.6640 9 1 1.2325 1.9710 4.0968 10 1 2.6206 2.4252 2.1609 11 1 0.2477 2.0114 1.8811 12 7 2.0182 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0834 15 8 3.0857 1.1257 -1.8917 16 6 3.2957 -0.7460 -3.3138 17 1 3.9014 -1.6022 -3.0169 18 6 2.1059 -1.2271 -4.1467 19 6 4.1451 0.2160 -4.1469 20 6 5.1128 -0.4903 -5.1136 21 7 6.1084 0.5260 -4.6990 22 6 5.3997 0.7268 -3.4157 23 1 -0.3634 0.6142 -0.8239 24 1 -0.3634 -1.0206 -0.1200 25 1 -0.3634 0.4065 0.9439 26 1 1.9116 -1.9121 3.4375 27 1 0.7374 -2.1443 -1.9995 28 1 2.4627 -2.5818 -1.9866 29 1 1.5295 -2.5968 -0.4710 30 1 1.5005 -1.9123 -3.5533 31 1 1.5002 -0.3709 -4.4435 32 1 2.4695 -1.7414 -5.0364 33 1 3.5573 1.0062 -4.6140 34 1 5.3705 -1.5058 -4.8130 35 1 4.8187 -0.4171 -6.1606 36 1 7.0141 0.1069 -4.5501 37 1 5.3346 1.7707 -3.1087 38 1 5.7405 0.0690 -2.6162 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129233900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:11 Heat of formation + Delta-G solvation = -4.323723 kcal Electronic energy + Delta-G solvation = -18236.621872 eV Core-core repulsion = 15501.213124 eV Total energy + Delta-G solvation = -2735.408749 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.19619 -38.47999 -35.45201 -33.74259 -32.39263 -29.91917 -26.99445 -26.25995 -25.93224 -24.82380 -23.55650 -20.88741 -19.47967 -18.33323 -17.52538 -16.64971 -16.17456 -15.62127 -14.86884 -14.72478 -13.91891 -13.49525 -13.43597 -13.09001 -12.73361 -12.50450 -12.44752 -12.12723 -11.83097 -11.74340 -11.67626 -11.39779 -11.23844 -10.86062 -10.71655 -10.49687 -10.37660 -10.07987 -9.78601 -9.16261 -9.01238 -8.83868 -8.31235 -7.76010 -6.52092 -4.14565 3.29035 3.39856 3.48818 3.62386 3.79315 4.11672 4.46817 4.57664 4.71099 5.00425 5.14852 5.27010 5.29730 5.33333 5.44750 5.51239 5.70548 5.76190 5.77893 5.83951 5.96830 6.04643 6.05530 6.20551 6.28990 6.36384 6.41371 6.43566 6.60926 6.95054 7.16930 7.22235 7.46130 7.85951 8.28708 8.35793 8.76300 8.96715 9.50614 10.82766 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031831 B = 0.006961 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.443701 B = 4021.600619 C = 4369.682421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.235 3.765 3 H 0.054 0.946 4 C -0.617 4.617 5 H 0.061 0.939 6 C 0.043 3.957 7 N -0.894 5.894 8 Si 1.031 2.969 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.276 1.276 12 N -0.587 5.587 13 C 0.084 3.916 14 C 0.509 3.491 15 O -0.550 6.550 16 C -0.105 4.105 17 H 0.089 0.911 18 C -0.153 4.153 19 C -0.088 4.088 20 C 0.007 3.993 21 N -0.641 5.641 22 C 0.022 3.978 23 H 0.025 0.975 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.269 0.731 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.314 0.686 37 H 0.094 0.906 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -2.871 -14.990 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.133 3.867 3 H 0.072 0.928 4 C -0.655 4.655 5 H 0.079 0.921 6 C -0.164 4.164 7 N -0.527 5.527 8 Si 0.859 3.141 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.202 1.202 12 N -0.318 5.318 13 C -0.060 4.060 14 C 0.295 3.705 15 O -0.428 6.428 16 C -0.127 4.127 17 H 0.107 0.893 18 C -0.210 4.210 19 C -0.107 4.107 20 C -0.123 4.123 21 N -0.266 5.266 22 C -0.108 4.108 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.519 -0.378 -14.201 14.287 hybrid contribution 0.454 -2.315 -0.481 2.408 sum 1.973 -2.694 -14.682 15.057 Atomic orbital electron populations 1.22418 0.98776 1.00046 1.00059 1.19145 0.90291 0.94708 0.82522 0.92829 1.22093 1.41322 1.11075 0.90996 0.92103 1.25625 0.93202 1.05702 0.91851 1.70871 1.43637 1.06326 1.31818 0.84218 0.77690 0.76080 0.76128 1.20936 1.20511 1.20193 1.47938 1.49268 1.11550 1.23013 1.21739 0.98743 0.83256 1.02251 1.20371 0.79021 0.87117 0.83955 1.90627 1.58223 1.17119 1.76873 1.21370 0.98148 0.98751 0.94424 0.89261 1.21986 0.97264 1.01970 0.99778 1.22742 0.94957 0.97447 0.95556 1.23825 0.93414 0.94655 1.00435 1.66955 1.04015 1.34930 1.20684 1.23619 0.92702 1.03182 0.91253 0.95622 0.93588 0.92040 0.92120 0.93514 0.92511 0.90247 0.90858 0.92243 0.92011 0.88181 0.91790 0.89669 0.87398 0.88751 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.01 37.16 0.33 -3.04 16 2 C 0.24 5.69 2.23 -69.09 -0.15 5.54 16 3 H 0.05 1.43 5.48 -51.93 -0.28 1.14 16 4 C -0.62 -16.89 8.30 -34.45 -0.29 -17.18 16 5 H 0.06 1.77 7.38 -52.48 -0.39 1.38 16 6 C 0.04 1.22 5.20 -17.82 -0.09 1.13 16 7 N -0.89 -26.68 13.70 55.43 0.76 -25.92 16 8 Si 1.03 25.42 26.44 -169.99 -4.49 20.93 16 9 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.32 6.12 56.52 0.35 -5.97 16 12 N -0.59 -12.01 2.75 -175.26 -0.48 -12.49 16 13 C 0.08 1.36 7.66 59.85 0.46 1.82 16 14 C 0.51 9.96 6.89 -10.99 -0.08 9.88 16 15 O -0.55 -12.71 14.36 5.56 0.08 -12.63 16 16 C -0.11 -1.48 1.66 -91.77 -0.15 -1.64 16 17 H 0.09 1.17 7.24 -51.93 -0.38 0.79 16 18 C -0.15 -1.76 8.81 37.16 0.33 -1.43 16 19 C -0.09 -1.20 2.85 -89.68 -0.26 -1.46 16 20 C 0.01 0.08 8.46 -2.63 -0.02 0.06 16 21 N -0.64 -8.09 8.53 -116.81 -1.00 -9.09 16 22 C 0.02 0.33 7.11 -2.76 -0.02 0.31 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.93 7.46 -51.93 -0.39 0.55 16 25 H 0.06 1.40 5.44 -51.93 -0.28 1.12 16 26 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16 27 H 0.05 0.66 6.95 -51.92 -0.36 0.29 16 28 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 29 H 0.08 1.44 6.92 -51.93 -0.36 1.08 16 30 H 0.07 0.82 4.53 -51.93 -0.24 0.59 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 0.61 7.99 -51.93 -0.41 0.20 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.31 3.38 8.92 -39.29 -0.35 3.03 16 37 H 0.09 1.57 8.08 -51.93 -0.42 1.15 16 38 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 294.22 15.07 4.43 4.43 Total: -1.00 -31.36 294.22 -6.55 -37.90 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.91 Total: 2.87 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 0.06 Total: -6.01 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.72 Total: -47.50 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.49 Total: 20.93 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.36 -6.55 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129233900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.580 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds