Wall clock time and date at job start Mon Mar 30 2020 03:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37875 * 120.00133 * 294.36950 * 4 2 1 7 7 N 1.31516 * 120.00510 * 156.90156 * 6 4 2 8 8 Si 1.86810 * 119.99756 * 337.17312 * 6 4 2 9 9 H 1.48501 * 109.47061 * 179.72434 * 8 6 4 10 10 H 1.48495 * 109.46894 * 299.72787 * 8 6 4 11 11 H 1.48496 * 109.46696 * 59.72479 * 8 6 4 12 12 N 1.46503 * 109.46749 * 240.00646 * 2 1 3 13 13 C 1.46505 * 120.00016 * 299.99254 * 12 2 1 14 14 C 1.34773 * 120.00310 * 119.99959 * 12 2 1 15 15 O 1.21276 * 119.99959 * 359.97438 * 14 12 2 16 16 C 1.50704 * 120.00250 * 179.97438 * 14 12 2 17 17 H 1.08998 * 109.47200 * 300.00174 * 16 14 12 18 18 C 1.52999 * 109.46748 * 60.00427 * 16 14 12 19 19 C 1.52995 * 109.46974 * 179.97438 * 16 14 12 20 20 C 1.53938 * 113.73324 * 158.76813 * 19 16 14 21 21 N 1.48187 * 86.10269 * 221.95932 * 20 19 16 22 22 C 1.47961 * 90.80004 * 24.59995 * 21 20 19 23 23 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 24 24 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 25 25 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 26 26 H 0.96989 * 119.99527 * 355.20009 * 7 6 4 27 27 H 1.09007 * 109.46817 * 90.00493 * 13 12 2 28 28 H 1.08992 * 109.47593 * 210.00355 * 13 12 2 29 29 H 1.08998 * 109.47142 * 330.00868 * 13 12 2 30 30 H 1.09004 * 109.46878 * 299.99581 * 18 16 14 31 31 H 1.08998 * 109.47478 * 59.99917 * 18 16 14 32 32 H 1.09006 * 109.47185 * 180.02562 * 18 16 14 33 33 H 1.09003 * 112.94220 * 290.33563 * 19 16 14 34 34 H 1.09005 * 113.75935 * 336.24091 * 20 19 16 35 35 H 1.09001 * 113.75829 * 107.60171 * 20 19 16 36 36 H 1.00900 * 111.07091 * 137.51923 * 21 20 19 37 37 H 1.09002 * 113.75755 * 221.08450 * 22 21 20 38 38 H 1.09000 * 113.85890 * 89.72989 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7976 -0.1758 2.4793 7 7 1.8082 -0.9532 3.5401 8 14 1.4571 1.6517 2.6640 9 1 1.2325 1.9710 4.0968 10 1 2.6206 2.4252 2.1609 11 1 0.2477 2.0114 1.8811 12 7 2.0182 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0834 15 8 3.0857 1.1257 -1.8917 16 6 3.2957 -0.7460 -3.3138 17 1 3.9014 -1.6022 -3.0169 18 6 2.1059 -1.2271 -4.1467 19 6 4.1451 0.2160 -4.1469 20 6 5.1128 -0.4903 -5.1136 21 7 6.1084 0.5260 -4.6990 22 6 5.3997 0.7268 -3.4157 23 1 -0.3634 0.6142 -0.8239 24 1 -0.3634 -1.0206 -0.1200 25 1 -0.3634 0.4065 0.9439 26 1 1.9116 -1.9121 3.4375 27 1 0.7374 -2.1443 -1.9995 28 1 2.4627 -2.5818 -1.9866 29 1 1.5295 -2.5968 -0.4710 30 1 1.5005 -1.9123 -3.5533 31 1 1.5002 -0.3709 -4.4435 32 1 2.4695 -1.7414 -5.0364 33 1 3.5573 1.0062 -4.6140 34 1 5.3705 -1.5058 -4.8130 35 1 4.8187 -0.4171 -6.1606 36 1 7.0141 0.1069 -4.5501 37 1 5.3346 1.7707 -3.1087 38 1 5.7405 0.0690 -2.6162 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129233900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:10 Heat of formation + Delta-G solvation = -28.390720 kcal Electronic energy + Delta-G solvation = -18237.665496 eV Core-core repulsion = 15501.213124 eV Total energy + Delta-G solvation = -2736.452372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.49100 -39.77818 -37.17264 -35.27673 -34.12556 -31.65025 -28.12559 -27.55141 -26.95654 -26.81259 -24.87984 -22.47291 -20.65709 -19.88427 -19.56410 -18.03190 -17.44509 -16.97616 -16.27673 -16.15092 -15.53686 -14.97437 -14.90727 -14.54378 -14.19797 -13.98152 -13.58973 -13.50843 -13.45144 -13.22111 -13.07771 -12.84235 -12.59552 -12.45054 -11.97674 -11.92815 -11.79105 -11.70725 -11.42834 -11.24266 -10.47851 -10.46310 -9.89862 -9.47438 -8.72553 -6.38554 1.41044 1.47874 1.67499 1.80124 2.30973 2.40929 2.95853 3.11845 3.43234 3.66289 3.84978 4.18339 4.28097 4.31442 4.42624 4.43530 4.51578 4.59293 4.62311 4.70705 4.77280 4.86591 4.87553 4.93695 4.93948 5.02828 5.11424 5.13440 5.25301 5.36922 5.40146 5.72650 5.82977 6.03553 6.31916 6.56012 6.76799 7.27831 7.42988 8.57638 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031831 B = 0.006961 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.443701 B = 4021.600619 C = 4369.682421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.234 3.766 3 H 0.028 0.972 4 C -0.612 4.612 5 H 0.034 0.966 6 C 0.000 4.000 7 N -0.923 5.923 8 Si 1.065 2.935 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.247 1.247 12 N -0.598 5.598 13 C 0.082 3.918 14 C 0.498 3.502 15 O -0.594 6.594 16 C -0.093 4.093 17 H 0.108 0.892 18 C -0.147 4.147 19 C -0.091 4.091 20 C 0.024 3.976 21 N -0.648 5.648 22 C 0.016 3.984 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.259 0.741 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.326 0.674 37 H 0.063 0.937 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.309 -3.813 -17.607 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.130 3.870 3 H 0.045 0.955 4 C -0.650 4.650 5 H 0.052 0.948 6 C -0.202 4.202 7 N -0.558 5.558 8 Si 0.888 3.112 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.172 1.172 12 N -0.328 5.328 13 C -0.061 4.061 14 C 0.287 3.713 15 O -0.476 6.476 16 C -0.114 4.114 17 H 0.126 0.874 18 C -0.205 4.205 19 C -0.110 4.110 20 C -0.105 4.105 21 N -0.274 5.274 22 C -0.115 4.115 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.039 -1.360 -16.853 16.939 hybrid contribution 0.683 -2.062 0.293 2.192 sum 1.721 -3.422 -16.559 16.997 Atomic orbital electron populations 1.22250 0.96645 1.01265 1.00259 1.18870 0.91825 0.93257 0.83015 0.95458 1.22244 1.40179 1.09940 0.92588 0.94751 1.26684 0.93077 1.08467 0.91962 1.70961 1.46273 1.05898 1.32633 0.83771 0.78587 0.72264 0.76620 1.20575 1.21035 1.17172 1.48009 1.49584 1.13148 1.22041 1.21962 1.01460 0.80792 1.01841 1.21429 0.77889 0.86899 0.85092 1.90606 1.59539 1.19362 1.78057 1.21380 0.99415 0.98575 0.92034 0.87435 1.21995 0.95940 1.01935 1.00581 1.22745 0.94615 0.97584 0.96085 1.23859 0.90997 0.95012 1.00673 1.66905 1.05034 1.36396 1.19060 1.23495 0.94546 1.01277 0.92158 0.93618 0.92278 0.93178 0.93201 0.90516 0.89232 0.92766 0.90252 0.93101 0.88615 0.89545 0.89449 0.87796 0.86085 0.91848 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.15 9.01 71.98 0.65 -5.51 16 2 C 0.23 11.28 2.23 44.24 0.10 11.37 16 3 H 0.03 1.48 5.48 -2.39 -0.01 1.46 16 4 C -0.61 -34.05 8.30 25.60 0.21 -33.84 16 5 H 0.03 2.05 7.38 -2.91 -0.02 2.03 16 6 C 0.00 -0.02 5.20 84.65 0.44 0.42 16 7 N -0.92 -56.31 13.70 21.45 0.29 -56.01 16 8 Si 1.06 51.77 26.44 68.60 1.81 53.59 16 9 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 11 H -0.25 -10.82 6.12 99.48 0.61 -10.21 16 12 N -0.60 -23.82 2.75 -826.81 -2.28 -26.09 16 13 C 0.08 2.46 7.66 127.77 0.98 3.44 16 14 C 0.50 19.05 6.89 87.66 0.60 19.65 16 15 O -0.59 -27.89 14.36 -3.02 -0.04 -27.94 16 16 C -0.09 -2.36 1.66 -11.54 -0.02 -2.38 16 17 H 0.11 2.39 7.24 -2.39 -0.02 2.37 16 18 C -0.15 -2.77 8.81 71.98 0.63 -2.14 16 19 C -0.09 -2.32 2.85 -10.15 -0.03 -2.35 16 20 C 0.02 0.44 8.46 86.37 0.73 1.17 16 21 N -0.65 -15.10 8.53 -523.48 -4.47 -19.57 16 22 C 0.02 0.46 7.11 86.41 0.61 1.07 16 23 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.06 2.30 7.46 -2.39 -0.02 2.28 16 25 H 0.05 2.20 5.44 -2.39 -0.01 2.19 16 26 H 0.26 15.78 8.73 -92.72 -0.81 14.97 16 27 H 0.08 1.87 6.95 -2.38 -0.02 1.85 16 28 H 0.09 2.08 6.01 -2.39 -0.01 2.07 16 29 H 0.05 1.92 6.92 -2.39 -0.02 1.90 16 30 H 0.08 1.40 4.53 -2.39 -0.01 1.39 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.09 1.23 7.99 -2.38 -0.02 1.21 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.33 6.31 8.92 -89.69 -0.80 5.51 16 37 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 38 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 Total: -1.00 -70.57 294.22 0.36 -70.21 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.12 Total: 14.89 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 4.92 Total: -9.08 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -6.45 Total: -101.67 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.04 Total: -27.94 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 1.81 Total: 53.59 kcal Total: -70.57 0.36 -70.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129233900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.824 kcal (2) G-P(sol) polarization free energy of solvation -70.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds