Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47263 * 2 1 4 4 C 1.50700 * 109.47580 * 239.99628 * 2 1 3 5 5 H 1.07996 * 119.99970 * 240.00312 * 4 2 1 6 6 C 1.37876 * 119.99790 * 59.99541 * 4 2 1 7 7 N 1.31511 * 119.99889 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99869 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47051 * 60.00542 * 8 6 4 10 10 H 1.48498 * 109.46997 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47186 * 300.00502 * 8 6 4 12 12 N 1.46504 * 109.47273 * 119.99499 * 2 1 3 13 13 C 1.46496 * 119.99619 * 55.04688 * 12 2 1 14 14 C 1.34774 * 120.00141 * 235.05225 * 12 2 1 15 15 O 1.21284 * 119.99614 * 183.55881 * 14 12 2 16 16 C 1.50696 * 120.00218 * 3.27716 * 14 12 2 17 17 H 1.09000 * 109.47378 * 307.27846 * 16 14 12 18 18 C 1.53008 * 109.46987 * 67.27518 * 16 14 12 19 19 C 1.53000 * 109.47171 * 187.27230 * 16 14 12 20 20 C 1.53939 * 113.73268 * 158.76657 * 19 16 14 21 21 N 1.48180 * 86.10225 * 221.96049 * 20 19 16 22 22 C 1.47956 * 90.80094 * 24.59848 * 21 20 19 23 23 H 1.08997 * 109.47637 * 300.00424 * 1 2 3 24 24 H 1.09000 * 109.47056 * 60.00228 * 1 2 3 25 25 H 1.08998 * 109.47263 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99916 * 179.97438 * 7 6 4 27 27 H 1.09009 * 109.47324 * 264.75494 * 13 12 2 28 28 H 1.08999 * 109.47572 * 24.75020 * 13 12 2 29 29 H 1.09003 * 109.46987 * 144.75660 * 13 12 2 30 30 H 1.08996 * 109.47109 * 52.61504 * 18 16 14 31 31 H 1.08999 * 109.46799 * 172.61519 * 18 16 14 32 32 H 1.08994 * 109.46651 * 292.61394 * 18 16 14 33 33 H 1.08994 * 112.94144 * 290.33532 * 19 16 14 34 34 H 1.08997 * 113.75924 * 336.24364 * 20 19 16 35 35 H 1.09002 * 113.75726 * 107.60503 * 20 19 16 36 36 H 1.00897 * 111.07650 * 137.52582 * 21 20 19 37 37 H 1.09004 * 113.76484 * 221.08434 * 22 21 20 38 38 H 1.09006 * 113.75569 * 89.72273 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8299 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8270 -0.4202 -5.2203 11 1 3.8065 -1.1211 -4.0079 12 7 2.0183 -0.6905 1.1962 13 6 1.5772 -2.0575 1.4843 14 6 2.8733 -0.0682 2.0318 15 8 3.3279 -0.6617 2.9868 16 6 3.2694 1.3631 1.7758 17 1 3.6334 1.4621 0.7532 18 6 2.0546 2.2718 1.9749 19 6 4.3751 1.7687 2.7524 20 6 5.2060 2.9758 2.2809 21 7 6.3868 2.2252 2.7688 22 6 5.6661 0.9436 2.6039 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7094 1.1615 -3.4845 27 1 0.7294 -2.0291 2.1689 28 1 1.2787 -2.5461 0.5567 29 1 2.3950 -2.6144 1.9416 30 1 1.6115 2.0772 2.9515 31 1 2.3678 3.3144 1.9192 32 1 1.3193 2.0712 1.1957 33 1 4.0240 1.8527 3.7808 34 1 5.1942 3.1222 1.2008 35 1 5.0054 3.8913 2.8375 36 1 7.1549 2.2945 2.1183 37 1 5.8325 0.2382 3.4181 38 1 5.7893 0.4942 1.6185 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129234091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = -9.061828 kcal Electronic energy + Delta-G solvation = -18404.965912 eV Core-core repulsion = 15669.351703 eV Total energy + Delta-G solvation = -2735.614208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.00732 -38.31015 -35.54433 -32.95927 -32.66214 -29.18960 -26.87991 -26.45856 -25.63961 -25.28548 -22.83207 -21.23037 -19.46857 -18.15153 -16.74976 -16.50396 -15.86609 -15.27832 -14.80726 -14.45708 -14.28746 -13.55776 -13.27286 -12.85492 -12.50509 -12.26611 -12.19395 -11.76998 -11.63682 -11.50486 -11.31942 -11.08590 -10.95824 -10.72940 -10.59750 -10.53338 -10.31843 -10.19061 -10.18379 -9.35386 -8.91864 -8.73223 -8.55558 -7.62371 -6.21746 -4.30300 3.19738 3.25182 3.27326 3.43431 3.95757 4.28483 4.29766 4.79783 4.97037 5.08800 5.33369 5.53713 5.59968 5.63676 5.71376 5.83617 5.96064 6.10144 6.16579 6.19758 6.21609 6.27076 6.32363 6.44790 6.51178 6.56439 6.68229 6.71314 6.88665 7.20444 7.37375 7.39506 7.64220 7.84555 8.09360 8.44579 8.73413 9.04163 9.38243 10.82433 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023173 B = 0.007911 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.994229 B = 3538.466243 C = 3883.507788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.248 3.752 3 H 0.062 0.938 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.592 5.592 13 C 0.095 3.905 14 C 0.515 3.485 15 O -0.573 6.573 16 C -0.102 4.102 17 H 0.099 0.901 18 C -0.146 4.146 19 C -0.087 4.087 20 C 0.006 3.994 21 N -0.642 5.642 22 C 0.020 3.980 23 H 0.013 0.987 24 H 0.094 0.906 25 H 0.032 0.968 26 H 0.265 0.735 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.313 0.687 37 H 0.090 0.910 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 2.868 4.973 6.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.148 3.852 3 H 0.080 0.920 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.322 5.322 13 C -0.048 4.048 14 C 0.303 3.697 15 O -0.454 6.454 16 C -0.123 4.123 17 H 0.117 0.883 18 C -0.203 4.203 19 C -0.106 4.106 20 C -0.124 4.124 21 N -0.266 5.266 22 C -0.110 4.110 23 H 0.032 0.968 24 H 0.112 0.888 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.039 2.819 6.140 7.409 hybrid contribution 0.118 -0.700 -2.104 2.220 sum 3.157 2.118 4.037 5.545 Atomic orbital electron populations 1.22124 0.98005 0.99989 1.00826 1.19205 0.91562 0.93737 0.80738 0.92028 1.21366 1.32022 1.13367 0.90272 0.92185 1.24875 0.94752 0.94959 0.98956 1.69838 1.36119 1.22564 1.24096 0.86567 0.79254 0.79809 0.81898 1.20157 1.21106 1.20215 1.48244 1.44369 1.14630 1.24963 1.21365 0.98591 0.84103 1.00784 1.20417 0.78668 0.88410 0.82231 1.90578 1.55991 1.67704 1.31130 1.21308 0.96953 0.93075 1.00999 0.88330 1.21885 0.97184 0.98621 1.02659 1.22732 0.93236 0.94758 0.99858 1.23839 0.91402 0.97909 0.99243 1.66929 1.05377 1.06253 1.48083 1.23622 0.92881 0.93074 1.01453 0.96756 0.88755 0.94841 0.92489 0.94355 0.90672 0.92472 0.92864 0.92080 0.90264 0.88408 0.91378 0.89716 0.87476 0.89184 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.63 37.15 0.32 -2.99 16 2 C 0.25 5.62 1.77 -69.08 -0.12 5.49 16 3 H 0.06 1.43 4.19 -51.93 -0.22 1.21 16 4 C -0.53 -13.38 8.06 -34.44 -0.28 -13.65 16 5 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -22.94 11.32 55.43 0.63 -22.31 16 8 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.59 -12.51 2.75 -175.27 -0.48 -12.99 16 13 C 0.10 1.84 9.29 59.84 0.56 2.39 16 14 C 0.51 10.56 6.72 -10.99 -0.07 10.48 16 15 O -0.57 -12.71 14.95 5.55 0.08 -12.63 16 16 C -0.10 -1.77 1.60 -91.77 -0.15 -1.92 16 17 H 0.10 1.82 7.18 -51.93 -0.37 1.44 16 18 C -0.15 -2.31 8.79 37.16 0.33 -1.99 16 19 C -0.09 -1.36 2.78 -89.69 -0.25 -1.61 16 20 C 0.01 0.08 8.40 -2.64 -0.02 0.06 16 21 N -0.64 -9.00 8.53 -116.84 -1.00 -10.00 16 22 C 0.02 0.31 7.28 -2.76 -0.02 0.29 16 23 H 0.01 0.27 7.92 -51.93 -0.41 -0.14 16 24 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 25 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 26 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 27 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.07 1.45 7.29 -51.93 -0.38 1.07 16 29 H 0.06 1.09 7.54 -51.93 -0.39 0.70 16 30 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.08 1.39 5.29 -51.93 -0.27 1.12 16 33 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.31 3.83 8.92 -39.29 -0.35 3.48 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -27.10 299.80 -7.08 -34.18 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.01 Total: 6.08 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 0.20 Total: -1.82 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.85 Total: -45.31 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.10 -7.08 -34.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129234091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.120 kcal (2) G-P(sol) polarization free energy of solvation -27.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds