Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47263 * 2 1 4 4 C 1.50700 * 109.47580 * 239.99628 * 2 1 3 5 5 H 1.07996 * 119.99970 * 240.00312 * 4 2 1 6 6 C 1.37876 * 119.99790 * 59.99541 * 4 2 1 7 7 N 1.31511 * 119.99889 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99869 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47051 * 60.00542 * 8 6 4 10 10 H 1.48498 * 109.46997 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47186 * 300.00502 * 8 6 4 12 12 N 1.46504 * 109.47273 * 119.99499 * 2 1 3 13 13 C 1.46496 * 119.99619 * 55.04688 * 12 2 1 14 14 C 1.34774 * 120.00141 * 235.05225 * 12 2 1 15 15 O 1.21284 * 119.99614 * 183.55881 * 14 12 2 16 16 C 1.50696 * 120.00218 * 3.27716 * 14 12 2 17 17 H 1.09000 * 109.47378 * 307.27846 * 16 14 12 18 18 C 1.53008 * 109.46987 * 67.27518 * 16 14 12 19 19 C 1.53000 * 109.47171 * 187.27230 * 16 14 12 20 20 C 1.53939 * 113.73268 * 158.76657 * 19 16 14 21 21 N 1.48180 * 86.10225 * 221.96049 * 20 19 16 22 22 C 1.47956 * 90.80094 * 24.59848 * 21 20 19 23 23 H 1.08997 * 109.47637 * 300.00424 * 1 2 3 24 24 H 1.09000 * 109.47056 * 60.00228 * 1 2 3 25 25 H 1.08998 * 109.47263 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99916 * 179.97438 * 7 6 4 27 27 H 1.09009 * 109.47324 * 264.75494 * 13 12 2 28 28 H 1.08999 * 109.47572 * 24.75020 * 13 12 2 29 29 H 1.09003 * 109.46987 * 144.75660 * 13 12 2 30 30 H 1.08996 * 109.47109 * 52.61504 * 18 16 14 31 31 H 1.08999 * 109.46799 * 172.61519 * 18 16 14 32 32 H 1.08994 * 109.46651 * 292.61394 * 18 16 14 33 33 H 1.08994 * 112.94144 * 290.33532 * 19 16 14 34 34 H 1.08997 * 113.75924 * 336.24364 * 20 19 16 35 35 H 1.09002 * 113.75726 * 107.60503 * 20 19 16 36 36 H 1.00897 * 111.07650 * 137.52582 * 21 20 19 37 37 H 1.09004 * 113.76484 * 221.08434 * 22 21 20 38 38 H 1.09006 * 113.75569 * 89.72273 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8299 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8270 -0.4202 -5.2203 11 1 3.8065 -1.1211 -4.0079 12 7 2.0183 -0.6905 1.1962 13 6 1.5772 -2.0575 1.4843 14 6 2.8733 -0.0682 2.0318 15 8 3.3279 -0.6617 2.9868 16 6 3.2694 1.3631 1.7758 17 1 3.6334 1.4621 0.7532 18 6 2.0546 2.2718 1.9749 19 6 4.3751 1.7687 2.7524 20 6 5.2060 2.9758 2.2809 21 7 6.3868 2.2252 2.7688 22 6 5.6661 0.9436 2.6039 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7094 1.1615 -3.4845 27 1 0.7294 -2.0291 2.1689 28 1 1.2787 -2.5461 0.5567 29 1 2.3950 -2.6144 1.9416 30 1 1.6115 2.0772 2.9515 31 1 2.3678 3.3144 1.9192 32 1 1.3193 2.0712 1.1957 33 1 4.0240 1.8527 3.7808 34 1 5.1942 3.1222 1.2008 35 1 5.0054 3.8913 2.8375 36 1 7.1549 2.2945 2.1183 37 1 5.8325 0.2382 3.4181 38 1 5.7893 0.4942 1.6185 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129234091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = -26.889663 kcal Electronic energy + Delta-G solvation = -18405.738985 eV Core-core repulsion = 15669.351703 eV Total energy + Delta-G solvation = -2736.387281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44374 -39.70787 -37.29144 -34.55977 -34.29758 -30.98288 -28.28541 -27.83650 -27.20866 -26.79387 -24.28096 -22.93662 -20.74343 -19.70455 -18.54382 -18.05562 -17.34738 -16.68107 -16.49083 -16.04549 -15.80127 -15.00242 -14.90552 -14.21276 -13.99716 -13.78295 -13.47463 -13.38103 -13.19584 -12.99071 -12.87659 -12.80800 -12.73373 -12.43392 -12.17416 -12.05141 -11.87128 -11.73883 -11.45362 -11.18046 -10.56696 -10.41839 -9.89855 -9.34226 -8.14147 -6.28415 1.42334 1.44637 1.50653 1.80963 2.33788 2.49056 3.13407 3.14523 3.48077 3.70749 3.93001 4.30047 4.34338 4.36697 4.45000 4.54405 4.65642 4.68342 4.71783 4.86970 4.91373 4.92287 4.94784 4.96863 5.03102 5.08395 5.10490 5.22561 5.35458 5.47567 5.58819 5.77040 6.02321 6.22811 6.31821 6.67009 6.87321 7.34474 7.47372 8.88043 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023173 B = 0.007911 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.994229 B = 3538.466243 C = 3883.507788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.254 3.746 3 H 0.058 0.942 4 C -0.547 4.547 5 H 0.047 0.953 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.277 1.277 12 N -0.599 5.599 13 C 0.095 3.905 14 C 0.508 3.492 15 O -0.592 6.592 16 C -0.095 4.095 17 H 0.088 0.912 18 C -0.139 4.139 19 C -0.088 4.088 20 C 0.018 3.982 21 N -0.642 5.642 22 C 0.018 3.982 23 H 0.030 0.970 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.267 0.733 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.326 0.674 37 H 0.075 0.925 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 3.730 4.967 6.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.153 3.847 3 H 0.076 0.924 4 C -0.585 4.585 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.543 5.543 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.203 1.203 12 N -0.329 5.329 13 C -0.049 4.049 14 C 0.297 3.703 15 O -0.475 6.475 16 C -0.117 4.117 17 H 0.106 0.894 18 C -0.197 4.197 19 C -0.107 4.107 20 C -0.112 4.112 21 N -0.267 5.267 22 C -0.113 4.113 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.326 3.681 6.136 7.891 hybrid contribution 0.038 -0.995 -2.072 2.298 sum 3.365 2.686 4.064 5.921 Atomic orbital electron populations 1.21960 0.97467 0.99818 1.00619 1.19031 0.91833 0.93356 0.80453 0.92397 1.21559 1.32112 1.13229 0.91619 0.93457 1.25438 0.94952 0.95555 1.01028 1.69919 1.36567 1.23227 1.24585 0.85762 0.78584 0.78856 0.79329 1.20106 1.20608 1.20283 1.48308 1.44664 1.15216 1.24712 1.21413 0.99069 0.83453 1.00922 1.20996 0.78010 0.89577 0.81694 1.90563 1.56526 1.68485 1.31909 1.21287 0.98187 0.91375 1.00815 0.89397 1.21831 0.95954 0.99803 1.02073 1.22732 0.92591 0.96193 0.99206 1.23852 0.89827 0.97525 0.99988 1.66893 1.05986 1.05122 1.48740 1.23518 0.93734 0.93610 1.00401 0.95093 0.90687 0.94930 0.92406 0.92841 0.91019 0.92587 0.92476 0.89347 0.92114 0.88860 0.90550 0.87741 0.86122 0.90683 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.06 8.63 71.98 0.62 -5.44 16 2 C 0.25 11.43 1.77 44.24 0.08 11.51 16 3 H 0.06 2.67 4.19 -2.39 -0.01 2.66 16 4 C -0.55 -27.43 8.06 25.60 0.21 -27.22 16 5 H 0.05 2.45 7.77 -2.91 -0.02 2.42 16 6 C 0.03 1.57 5.30 84.65 0.45 2.02 16 7 N -0.90 -46.28 11.32 21.45 0.24 -46.04 16 8 Si 0.95 40.54 29.54 68.60 2.03 42.57 16 9 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 12 N -0.60 -25.11 2.75 -826.81 -2.28 -27.38 16 13 C 0.09 3.62 9.29 127.77 1.19 4.80 16 14 C 0.51 20.62 6.72 87.66 0.59 21.21 16 15 O -0.59 -26.15 14.95 -3.04 -0.05 -26.20 16 16 C -0.10 -3.21 1.60 -11.54 -0.02 -3.23 16 17 H 0.09 3.18 7.18 -2.39 -0.02 3.16 16 18 C -0.14 -4.17 8.79 71.98 0.63 -3.54 16 19 C -0.09 -2.63 2.78 -10.15 -0.03 -2.66 16 20 C 0.02 0.43 8.40 86.37 0.73 1.16 16 21 N -0.64 -16.78 8.53 -523.56 -4.47 -21.24 16 22 C 0.02 0.55 7.28 86.41 0.63 1.18 16 23 H 0.03 1.19 7.92 -2.39 -0.02 1.17 16 24 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 25 H 0.03 1.36 7.42 -2.39 -0.02 1.35 16 26 H 0.27 13.09 8.31 -92.70 -0.77 12.32 16 27 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.07 2.76 7.29 -2.39 -0.02 2.74 16 29 H 0.06 2.13 7.54 -2.39 -0.02 2.11 16 30 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.09 2.14 8.07 -2.39 -0.02 2.12 16 32 H 0.06 2.06 5.29 -2.39 -0.01 2.04 16 33 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.08 1.74 7.99 -2.39 -0.02 1.72 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.33 7.30 8.92 -89.70 -0.80 6.50 16 37 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 38 H 0.05 1.77 8.10 -2.38 -0.02 1.75 16 Total: -1.00 -55.81 299.80 0.80 -55.01 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.25 Total: 23.49 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.07 Total: -0.21 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -6.50 Total: -94.66 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -55.81 0.80 -55.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129234091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.117 kcal (2) G-P(sol) polarization free energy of solvation -55.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds